EDIT

package eu.etaxonomy.cdm.io.plantglossary;

import java.io.IOException;

import java.net.URI;

import org.apache.log4j.Logger;

import eu.etaxonomy.cdm.app.common.CdmDestinations;

import eu.etaxonomy.cdm.database.DbSchemaValidation;

import eu.etaxonomy.cdm.database.ICdmDataSource;

import eu.etaxonomy.cdm.io.common.CdmDefaultImport;

import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;

public class PlantGlossaryActivator {

	@SuppressWarnings("unused")

	private static final Logger logger = Logger.getLogger(PlantGlossaryActivator.class);

	private void doImport(ICdmDataSource cdmDestination) throws IOException{

	    /*

	     * Source file:

	     * extracted data from https://terms.tdwg.org

	     *

	     * Cleaning data with OpenRefine:

	     *  - generated URI column

	     *  - parsed term description by crawling term html pages (description are not retrieved via web interface)

	     */

	    URI uri = URI.create("file:/home/pplitzner/projects/Additivity/plant_glossary_states.csv");

		PlantGlossaryCsvImportConfigurator config = PlantGlossaryCsvImportConfigurator.NewInstance(uri, cdmDestination);

		config.setCheck(CHECK.IMPORT_WITHOUT_CHECK);

		config.setDbSchemaValidation(DbSchemaValidation.VALIDATE);

		CdmDefaultImport<PlantGlossaryCsvImportConfigurator> myImport = new CdmDefaultImport<>();

		System.out.println("Start import from ("+ cdmDestination.toString() + ") ...");

		myImport.invoke(config);

		System.out.println("End import from ("+ cdmDestination.toString() + ")...");

	}

	public static void main(String[] args) {

		PlantGlossaryActivator activator = new PlantGlossaryActivator();

		try {

//	        ICdmDataSource dataSource = CdmDestinations.makeDestination(DatabaseTypeEnum.MySQL, "127.0.0.1", "empty", 3306, "root", null);

		    ICdmDataSource dataSource = CdmDestinations.cdm_additivity_ontology();

            activator.doImport(dataSource);

        } catch (IOException e) {

            e.printStackTrace();

        }

	}

}