Revision 6457f4a5
Added by Patrick Plitzner about 8 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/gefaesspflanzen/RedListGefaesspflanzenImportTaxa.java | ||
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import eu.etaxonomy.cdm.io.common.ResultSetPartitioner; |
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import eu.etaxonomy.cdm.model.common.CdmBase; |
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import eu.etaxonomy.cdm.model.name.BotanicalName; |
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import eu.etaxonomy.cdm.model.name.Rank; |
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import eu.etaxonomy.cdm.model.taxon.Synonym; |
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import eu.etaxonomy.cdm.model.taxon.Taxon; |
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import eu.etaxonomy.cdm.model.taxon.TaxonBase; |
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|
| ... | ... | |
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super.doInvoke(state); |
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} |
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@Override |
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public boolean doPartition(ResultSetPartitioner partitioner, RedListGefaesspflanzenImportState state) {
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ResultSet rs = partitioner.getResultSet(); |
| ... | ... | |
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long id = rs.getLong("NAMNR");
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String gueltString = rs.getString("GUELT");
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BotanicalName name = state.getRelatedObject(Namespace.NAME_NAMESPACE,String.valueOf(id), BotanicalName.class); |
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TaxonBase taxon = Taxon.NewInstance(name, null); |
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// BotanicalName name = state.getRelatedObject(Namespace.NAME_NAMESPACE,String.valueOf(id), BotanicalName.class); |
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BotanicalName name = BotanicalName.NewInstance(Rank.GENUS()); |
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name.setGenusOrUninomial(String.valueOf(id)); |
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TaxonBase taxonBase = null; |
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if(gueltString.equals("1")){
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taxonBase = Taxon.NewInstance(name, null); |
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} |
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else if(gueltString.equals("x")){
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taxonBase = Synonym.NewInstance(name, null); |
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} |
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else if(gueltString.equals("b")){
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taxonBase = Synonym.NewInstance(name, null); |
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} |
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if(taxonBase==null){
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logger.error("NAMNR: "+id+" Taxon for name "+name+" could not be created.");
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return; |
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} |
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taxaToSave.add(taxon); |
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taxaToSave.add(taxonBase);
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//id |
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ImportHelper.setOriginalSource(taxon, state.getTransactionalSourceReference(), id, Namespace.TAXON_NAMESPACE); |
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ImportHelper.setOriginalSource(taxonBase, state.getTransactionalSourceReference(), id, Namespace.TAXON_NAMESPACE); |
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state.getTaxonMap().put(id, taxonBase.getUuid()); |
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} |
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@Override |
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public Map<Object, Map<String, ? extends CdmBase>> getRelatedObjectsForPartition(ResultSet rs, |
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RedListGefaesspflanzenImportState state) {
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Map<Object, Map<String, ? extends CdmBase>> result = new HashMap<>(); |
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Map<String, BotanicalName> nameMap = new HashMap<String, BotanicalName>(); |
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try {
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while (rs.next()){
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long id = rs.getLong("NAMNR");
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nameMap.put(String.valueOf(id), (BotanicalName) getNameService().load(state.getNameMap().get(id))); |
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} |
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} catch (SQLException e) {
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e.printStackTrace(); |
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} |
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result.put(Namespace.NAME_NAMESPACE, nameMap); |
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// Map<String, BotanicalName> nameMap = new HashMap<String, BotanicalName>();
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// try {
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// while (rs.next()){
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// long id = rs.getLong("NAMNR");
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// nameMap.put(String.valueOf(id), (BotanicalName) getNameService().load(state.getNameMap().get(id)));
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// }
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// } catch (SQLException e) {
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// e.printStackTrace();
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// }
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// result.put(Namespace.NAME_NAMESPACE, nameMap);
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return result; |
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} |
Also available in: Unified diff
Import taxon hierarchy