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Revision 6243a668

Added by Andreas Müller over 11 years ago

adding collections to AlgaTerra import

View differences:

app-import/src/main/java/eu/etaxonomy/cdm/io/algaterra/AlgaTerraSpecimenImport.java
50 50 
import eu.etaxonomy.cdm.model.description.TextData;
51 51 
import eu.etaxonomy.cdm.model.name.BotanicalName;
52 52 
import eu.etaxonomy.cdm.model.name.Rank;
53 
import eu.etaxonomy.cdm.model.occurrence.Collection;
53 54 
import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
54 55 
import eu.etaxonomy.cdm.model.occurrence.FieldObservation;
55 56 
import eu.etaxonomy.cdm.model.reference.Reference;
......
157 158 
					DerivedUnitFacade facade = getDerivedUnit(state, ecoFactId, ecoFactMap, type);
158 159
159 160 
					//field observation
160 
					handleSingleSpecimen(rs, facade, state);
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					handleSingleSpecimen(rs, facade, state, partitioner);
161 162
162 163 
					handleEcoFactSpecificSpecimen(rs,facade, state);
163 164
......
465 466 
			Set<String> taxonIdSet = new HashSet<String>();
466 467 
			Set<String> fieldObservationIdSet = new HashSet<String>();
467 468 
			Set<String> termsIdSet = new HashSet<String>();
469 
			Set<String> collectionIdSet = new HashSet<String>();
468 470
469 471 
			while (rs.next()){
470 472 
				handleForeignKey(rs, taxonIdSet, "taxonId");
......
472 474 
				handleForeignKey(rs, termsIdSet, "ClimateFk");
473 475 
				handleForeignKey(rs, termsIdSet, "HabitatFk");
474 476 
				handleForeignKey(rs, termsIdSet, "LifeFormFk");
477 
				handleForeignKey(rs, collectionIdSet, "CollectionFk");
475 478 
			}
476 479
477 480 
			//taxon map
......
488 491 
			Map<String, FieldObservation> fieldObservationMap = (Map<String, FieldObservation>)getCommonService().getSourcedObjectsByIdInSource(cdmClass, idSet, nameSpace);
489 492 
			result.put(nameSpace, fieldObservationMap);
490 493 

  		




  
  494
  
    
			//collections


  		




  
  495
  
    
			nameSpace = AlgaTerraCollectionImport.NAMESPACE_COLLECTION;


  		




  
  496
  
    
			cdmClass = Collection.class;


  		




  
  497
  
    
			idSet = collectionIdSet;


  		




  
  498
  
    
			Map<String, Collection> collectionMap = (Map<String, Collection>)getCommonService().getSourcedObjectsByIdInSource(cdmClass, idSet, nameSpace);


  		




  
  499
  
    
			result.put(nameSpace, collectionMap);


  		




  
  500
  
    

  		




  
  501
  
    
			//sub-collections


  		




  
  502
  
    
			nameSpace = AlgaTerraCollectionImport.NAMESPACE_SUBCOLLECTION;


  		




  
  503
  
    
			cdmClass = Collection.class;


  		




  
  504
  
    
			idSet = collectionIdSet;


  		




  
  505
  
    
			Map<String, Collection> subCollectionMap = (Map<String, Collection>)getCommonService().getSourcedObjectsByIdInSource(cdmClass, idSet, nameSpace);


  		




  
  506
  
    
			result.put(nameSpace, subCollectionMap);


  		




  
  507
  
    

  		




  491
  508
  
    
			//terms


  		




  492
  509
  
    
			nameSpace = AlgaTerraSpecimenImport.TERMS_NAMESPACE;


  		




  493
  510
  
    
			cdmClass = FieldObservation.class;


  		












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