EDIT

/**

* Copyright (C) 2015 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.app.caryophyllales;

import java.io.IOException;

import java.net.URI;

import java.util.UUID;

import org.apache.log4j.Logger;

import eu.etaxonomy.cdm.app.common.CdmDestinations;

import eu.etaxonomy.cdm.database.DbSchemaValidation;

import eu.etaxonomy.cdm.database.ICdmDataSource;

import eu.etaxonomy.cdm.io.common.CdmDefaultImport;

import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;

import eu.etaxonomy.cdm.io.common.ImportResult;

import eu.etaxonomy.cdm.io.tropicos.in.TropicosNameImportConfigurator;

import eu.etaxonomy.cdm.model.name.NomenclaturalCode;

import eu.etaxonomy.cdm.model.reference.Reference;

import eu.etaxonomy.cdm.model.reference.ReferenceFactory;

/**

 * @author a.mueller

 * @date 18.10.2017

 *

 */

public class PlumbaginaceaeTropicosActivator {

    @SuppressWarnings("unused")

    private static final Logger logger = Logger.getLogger(PlumbaginaceaeTropicosActivator.class);

    //database validation status (create, update, validate ...)

    static DbSchemaValidation dbSchemaValidation = DbSchemaValidation.VALIDATE;

//    static final ICdmDataSource cdmDestination = CdmDestinations.localH2();

//    static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_test1();

//    static final ICdmDataSource cdmDestination = CdmDestinations.cdm_production_caryophyllales_spp();

  static final ICdmDataSource cdmDestination = CdmDestinations.cdm_local_caryo_spp();

    static final boolean createTaxa = true;

    static int transactionLineCount = 100;

    static final String classificationName = "Tropicos Plumbaginaceae";

    static final UUID parentNodeUuid = UUID.fromString("46755269-5b06-4308-9871-c55850610769");

    //check - import

    static CHECK check = CHECK.IMPORT_WITHOUT_CHECK;

    private void doImport(ICdmDataSource cdmDestination){

        URI source = getPlumbaginaceaeTropicosUri();

        TropicosNameImportConfigurator config;

        try {

            config = TropicosNameImportConfigurator.NewInstance(source, cdmDestination);

            config.setDbSchemaValidation(dbSchemaValidation);

            config.setCheck(check);

            config.setNomenclaturalCode(NomenclaturalCode.ICNAFP);

            config.setCreateTaxa(createTaxa);

            config.setClassificationName(classificationName);

            config.setSourceReference(getSourceReference());

            config.setParentNodeUuid(parentNodeUuid);

            config.setTransactionLineCount(transactionLineCount);

            CdmDefaultImport<TropicosNameImportConfigurator> myImport = new CdmDefaultImport<>();

            ImportResult result = myImport.invoke(config);

            System.out.println(result.createReport());

        } catch (IOException e) {

            System.out.println("URI not 'found': " + source);

        }

    }

    private URI getPlumbaginaceaeTropicosUri(){

//        String fileName = "TropicosNameImportTest-input.txt";

        String fileName = "TropicosOutput2CDM_Plumbaginaceae.txt";

        URI uri = URI.create("file:////BGBM-PESIHPC/Caryophyllales/" +  fileName);

        return uri;

    }

    private Reference getSourceReference(){

        Reference result = ReferenceFactory.newDatabase();

        result.setTitle("Tropicos Plumbaginaceae import");

        result.setUuid(UUID.fromString("937f3a38-dbb4-4888-9ea3-2f52d47f7953"));

        return result;

    }

    /**

     * @param args

     */

    public static void main(String[] args) {

        PlumbaginaceaeTropicosActivator me = new PlumbaginaceaeTropicosActivator();

        me.doImport(cdmDestination);

        System.exit(0);

    }

}

    public static ICdmDataSource cdm_local_caryo_spp(){

        DatabaseTypeEnum dbType = DatabaseTypeEnum.MySQL;

        String cdmServer = "127.0.0.1";

        String cdmDB = "cdm_caryo_spp";

        String cdmUserName = "edit";

        return makeDestination(dbType, cdmServer, cdmDB, -1, cdmUserName, null);

    }

        super.refreshTransactionStatus(state);