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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.app.dwca;
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import java.io.File;
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import java.net.URI;
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import java.util.Arrays;
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import java.util.List;
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import java.util.UUID;
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import org.apache.log4j.Logger;
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import org.joda.time.DateTime;
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import eu.etaxonomy.cdm.app.common.CdmDestinations;
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import eu.etaxonomy.cdm.common.monitor.DefaultProgressMonitor;
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import eu.etaxonomy.cdm.common.monitor.IProgressMonitor;
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import eu.etaxonomy.cdm.database.ICdmDataSource;
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import eu.etaxonomy.cdm.io.common.CdmDefaultExport;
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import eu.etaxonomy.cdm.io.common.ExportResult;
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import eu.etaxonomy.cdm.io.common.IExportConfigurator.CHECK;
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import eu.etaxonomy.cdm.io.dwca.out.DwcaEmlRecord;
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import eu.etaxonomy.cdm.io.dwca.out.DwcaTaxExportConfigurator;
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import eu.etaxonomy.cdm.model.agent.Institution;
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import eu.etaxonomy.cdm.model.agent.InstitutionalMembership;
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import eu.etaxonomy.cdm.model.agent.Person;
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/**
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*
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* @author a.mueller
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*
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*/
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public class DwcaExportActivator {
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@SuppressWarnings("unused")
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private static final Logger logger = Logger.getLogger(DwcaExportActivator.class);
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//database validation status (create, update, validate ...)
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private static final String fileDestination = "C:\\tmp\\dwcaTmp\\cyprus\\";
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// private static final ICdmDataSource cdmSource = CdmDestinations.cdm_local_cichorieae();
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// private static final ICdmDataSource cdmSource = CdmDestinations.cdm_test_local_mysql();
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// private static final ICdmDataSource cdmSource = CdmDestinations.cdm_production_cichorieae();
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// private static final ICdmDataSource cdmSource = CdmDestinations.cdm_flora_central_africa_production();
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private static final ICdmDataSource cdmSource = CdmDestinations.cdm_production_cyprus();
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private IProgressMonitor monitor = DefaultProgressMonitor.NewInstance();
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private static DateTime dateTime = new DateTime();
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private static String date = dateTime.getYear() + "-" + dateTime.getMonthOfYear() + "-" + dateTime.getDayOfMonth();
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private static final String defaultBibliographicCitation = "ICN (Hand, R., Kilian, N. & Raab-Straube, E. von; general editors) 2009+ (continuously updated): International Cichorieae Network: Cichorieae Portal. Published on the Internet at http://wp6-cichorieae.e-taxonomy.eu/portal/; " +
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"accessed ["+date+"].";
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private static final String taxonSourceDefault = "http://wp6-cichorieae.e-taxonomy.eu/portal/?q=cdm_dataportal/taxon/{id}";
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//check - import
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private static final CHECK check = CHECK.EXPORT_WITHOUT_CHECK;
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private static List<UUID> featureExclusions = Arrays.asList(new UUID[]{
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UUID.fromString("5deff505-1a32-4817-9a74-50e6936fd630"), //occurrences
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UUID.fromString("8075074c-ace8-496b-ac82-47c14553f7fd"), //Editor_Parenthesis
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UUID.fromString("c0cc5ebe-1f0c-4c31-af53-d486858ea415"), //Image Sources
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UUID.fromString("9f6c551d-0f19-45ea-a855-4946f6fc1093"), //Credits
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UUID.fromString("cbf12c6c-94e6-4724-9c48-0f6f10d83e1c"), //Editor Brackets
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UUID.fromString("0508114d-4158-48b5-9100-369fa75120d3") //inedited
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});
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// ****************** ALL *****************************************
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// private boolean doTaxa = true;
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// private boolean doResourceRelation = true;
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// private boolean doTypesAndSpecimen = true;
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// private boolean doVernacularNames = true;
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// private boolean doReferences = true;
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// private boolean doDescription = true;
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// private boolean doDistributions = true;
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// private boolean doImages = false;
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// private boolean doMetaData = true;
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// private boolean doEml = true;
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// ************************ NONE **************************************** //
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private boolean doTaxa = true;
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private boolean doResourceRelation = false;
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private boolean doTypesAndSpecimen = false;
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private boolean doVernacularNames = false;
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private boolean doReferences = false;
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private boolean doDescription = false;
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private boolean doDistributions = false;
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private boolean doImages = false;
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private boolean doMetaData = true;
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private boolean doEml = false;
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public ExportResult doExport(ICdmDataSource source){
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System.out.println("Start export to DWC-A ("+ fileDestination + ") ...");
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// CdmUpdater su = CdmUpdater.NewInstance();
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// IProgressMonitor monitor = DefaultProgressMonitor.NewInstance();
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//
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// try {
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// su.updateToCurrentVersion(source, monitor);
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// } catch (Exception e) {
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// e.printStackTrace();
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// }
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// if (true){
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// return true;
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// }
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//make file destination
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String destination = fileDestination;
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DwcaEmlRecord emlRecord = getEmlRecord();
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DwcaTaxExportConfigurator config = DwcaTaxExportConfigurator.NewInstance(source, new File(destination), emlRecord);
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config.setDoTaxa(doTaxa);
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config.setDoResourceRelations(doResourceRelation);
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config.setDoTypesAndSpecimen(doTypesAndSpecimen);
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config.setDoVernacularNames(doVernacularNames);
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config.setDoReferences(doReferences);
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config.setDoDescriptions(doDescription);
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config.setDoDistributions(doDistributions);
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config.setDoImages(doImages);
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config.setDoMetaData(doMetaData);
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config.setDoEml(doEml);
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config.setCheck(check);
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config.setProgressMonitor(monitor);
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config.setDefaultBibliographicCitation(defaultBibliographicCitation);
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config.setDefaultTaxonSource(taxonSourceDefault);
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monitor.beginTask("DwcA-Export", 10);
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config.setFeatureExclusions(featureExclusions);
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// invoke import
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CdmDefaultExport<DwcaTaxExportConfigurator> bmExport = new CdmDefaultExport<>();
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ExportResult result = bmExport.invoke(config);
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System.out.println("End export to DWC-A ("+ fileDestination + ")..." + "("+result.getState().toString()+")");
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return result;
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}
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private DwcaEmlRecord getEmlRecord() {
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DwcaEmlRecord emlRecord = new DwcaEmlRecord();
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emlRecord.setIdentifier("My Identifier");
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emlRecord.setTitle("Flora of cyprus");
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emlRecord.setPublicationDate(new DateTime());
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emlRecord.setExpectedCitation("Expected Citation");
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emlRecord.setAbstractInfo("The abstract");
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emlRecord.setAdditionalInformation("Add info");
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emlRecord.setResourceLanguage(null);
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emlRecord.setResourceUrl(URI.create("http://www.flora-of-cyprus.eu//portal/"));
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emlRecord.setMetaDataLanguage(null);
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emlRecord.setResourceLogoUri(null);
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emlRecord.setCreativeCommonsLicensing(null);
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emlRecord.setProjectTitle("Projekt tit");
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emlRecord.setProjectLead("Proj Lead");
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emlRecord.setProjectDescription("Proj Desc");
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Person person = Person.NewInstance();
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Institution institution = Institution.NewInstance();
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InstitutionalMembership m = person.addInstitutionalMembership(institution, null, null, null);
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emlRecord.setResourceCreator(m);
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return emlRecord;
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}
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/**
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* @param args
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*/
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public static void main(String[] args) {
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DwcaExportActivator ex = new DwcaExportActivator();
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ICdmDataSource source = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmSource;
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ex.doExport(source);
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}
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}
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