EDIT

/**

* Copyright (C) 2016 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.app.uzbekistan;

import java.io.File;

import java.net.URI;

import java.util.UUID;

import org.apache.log4j.Logger;

import eu.etaxonomy.cdm.app.common.CdmDestinations;

import eu.etaxonomy.cdm.database.DbSchemaValidation;

import eu.etaxonomy.cdm.database.ICdmDataSource;

import eu.etaxonomy.cdm.io.common.CdmDefaultImport;

import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;

import eu.etaxonomy.cdm.io.common.ImportResult;

import eu.etaxonomy.cdm.io.uzbekistan.UzbekistanTaxonImportConfigurator;

import eu.etaxonomy.cdm.model.agent.Person;

import eu.etaxonomy.cdm.model.agent.Team;

import eu.etaxonomy.cdm.model.reference.Reference;

import eu.etaxonomy.cdm.model.reference.ReferenceFactory;

import eu.etaxonomy.cdm.strategy.parser.TimePeriodParser;

/**

 *

 * Import for Flora of Uzbekistan taxa.

 *

 * https://dev.e-taxonomy.eu/redmine/issues/8996

 *

 * @author a.mueller

 * @since 05.05.2020

 */

public class UzbekistanTaxonActivator {

    @SuppressWarnings("unused")

    private static final Logger logger = Logger.getLogger(UzbekistanTaxonActivator.class);

    //database validation status (create, update, validate ...)

    static final ICdmDataSource cdmDestination = CdmDestinations.localH2();

//    static final ICdmDataSource cdmDestination = CdmDestinations.cdm_local_cdmtest_mysql();

//    static final ICdmDataSource cdmDestination = CdmDestinations.cdm_local_uzbekistan();

//    static final ICdmDataSource cdmDestination = CdmDestinations.cdm_production_uzbekistan();

    static DbSchemaValidation hbm2dll = cdmDestination == CdmDestinations.localH2() ? DbSchemaValidation.CREATE : DbSchemaValidation.VALIDATE;

    //classification

    static final UUID classificationUuid = UUID.fromString("230ca922-bf63-4297-b631-aed87f553107");

    private static final String classificationName = "Flora of Uzbekistan";

    static final UUID secRefUuid = UUID.fromString("09b9b07a-a501-49d0-877c-14dd738537bb");

    static final UUID sourceRefUuid = UUID.fromString("295e0b9c-c637-45db-8e71-ca664f128221");

    static final String fileName = "FoU_taxonomy_2020_05_12.xlsx";

    //check - import

    static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;

    private void doImport(ICdmDataSource cdmDestination){

        //make Source

        URI source = uzbekistanChecklist();

//        URI source = uzbekistanChecklist_local();

        UzbekistanTaxonImportConfigurator config = UzbekistanTaxonImportConfigurator.NewInstance(source, cdmDestination);

        config.setClassificationUuid(classificationUuid);

        config.setClassificationName(classificationName);

        config.setCheck(check);

        config.setDbSchemaValidation(hbm2dll);

//        config.setUuidFeatureTree(featureTreeUuid);

//        config.setFeatureTreeTitle(featureTreeTitle);

        config.setSecReference(getSecReference());

        config.setSourceReference(getSourceReference());

        CdmDefaultImport<UzbekistanTaxonImportConfigurator> myImport = new CdmDefaultImport<>();

        ImportResult result = myImport.invoke(config);

        System.out.println(result.createReport());

    }

    private URI uzbekistanChecklist(){

        return URI.create("file:////BGBM-PESIHPC/Uzbekistan/" + fileName);

    }

    @SuppressWarnings("unused")

    private URI uzbekistanChecklist_local(){

        File file = new File("C:\\Users\\a.mueller\\BGBM\\Data\\Uzbekistan\\" + fileName);

    	return file.toURI();

    }

    private Reference secRef;

    private Reference getSecReference(){

        if (secRef != null){

            return secRef;

        }

        Reference result = ReferenceFactory.newArticle();

        result.setTitle("Corrections and amendments to the 2016 classification of lichenized fungi in the Ascomycota and Basidiomycota");

        result.setDatePublished(TimePeriodParser.parseStringVerbatim("2016"));

        Team team = Team.NewInstance();

        Person person = Person.NewInstance();

        person.setInitials("R.");

        person.setFamilyName("Lücking");

        team.addTeamMember(person);

        result.setAuthorship(team);

//        result.setPublisher("Berlin: Botanic Garden and Botanical Museum Berlin-Dahlem; Athens: Hellenic Botanical Society.");

        result.setVolume("120(1)");

        Reference journal = ReferenceFactory.newJournal();

        journal.setTitle("The Bryologist");

        result.setInReference(journal);

        secRef = result;

        secRef.setUuid(secRefUuid);

        return result;

    }

    private Reference getSourceReference(){

        Reference result = ReferenceFactory.newGeneric();

        result.setTitle("Excelfile (FoU_taxonomy_template.xlsx) derived from ");

//        result.setInReference(getSecReference());

        result.setUuid(sourceRefUuid);

        return result;

    }

    public static void main(String[] args) {

        UzbekistanTaxonActivator me = new UzbekistanTaxonActivator();

        me.doImport(cdmDestination);

        System.exit(0);

    }

}