EDIT

/**

* Copyright (C) 2009 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.io.pesi.out;

import org.apache.log4j.Logger;

import org.springframework.stereotype.Component;

import eu.etaxonomy.cdm.model.common.CdmBase;

import eu.etaxonomy.cdm.model.taxon.TaxonBase;

/**

 * The export class for {@link eu.etaxonomy.cdm.model.name.TaxonNameBase TaxonNames}.<p>

 * Inserts into DataWarehouse database table <code>Taxon</code>.

 * It is divided into four phases:<p><ul>

 * <li>Phase 1:	Export of all {@link eu.etaxonomy.cdm.model.name.TaxonNameBase TaxonNames} except some data exported in the following phases.

 * <li>Phase 2:	Export of additional data: ParenTaxonFk and TreeIndex.

 * <li>Phase 3:	Export of additional data: Rank data, KingdomFk, TypeNameFk, expertFk and speciesExpertFk.

 * <li>Phase 4:	Export of Inferred Synonyms.</ul>

 * @author e.-m.lee

 * @since 23.02.2010

 *

 */

@Component

public class PesiFinalUpdateExport extends PesiExportBase {

    private static final long serialVersionUID = 6190569804410237104L;

    private static final Logger logger = Logger.getLogger(PesiFinalUpdateExport.class);

    private static final Class<? extends CdmBase> standardMethodParameter = TaxonBase.class;

	private static final String pluralString = "taxa";

	public PesiFinalUpdateExport() {

		super();

	}

	@Override

	public Class<? extends CdmBase> getStandardMethodParameter() {

		return standardMethodParameter;

	}

	@Override

	protected boolean doCheck(PesiExportState state) {

		boolean result = true;

		return result;

	}

	@Override

	protected void doInvoke(PesiExportState state) {

		try {

			logger.info("*** Started Making " + pluralString + " ...");

			// Stores whether this invoke was successful or not.

			boolean success = true;

			//updates to TaxonStatus and others

			success &= doPhaseUpdates(state);

			logger.info("*** Finished Making " + pluralString + " ..." + getSuccessString(success));

			if (!success){

				state.getResult().addError("An unknown error occurred in PesiFinalUpdateExport.invoke");

			}

			return;

		} catch (Exception e) {

			e.printStackTrace();

			logger.error(e.getMessage());

			state.getResult().addException(e, e.getMessage());

			return;

		}

	}

	private boolean doPhaseUpdates(PesiExportState state) {

		String oldStatusFilter = " 7 ";  //"= '" + PesiTransformer.T_STATUS_STR_UNACCEPTED + "' ";

		String emStr = PesiTransformer.SOURCE_STR_EM;

		String feStr = PesiTransformer.SOURCE_STR_FE;

		String ifStr = PesiTransformer.SOURCE_STR_IF;

		//NOT ACCEPTED names

		String updateNotAccepted = " UPDATE Taxon SET TaxonStatusFk = %d, TaxonStatusCache = '%s' " +

				" WHERE OriginalDB = '%s' AND taxonstatusfk = 1 AND ParentTaxonFk = %s AND RankFk > 180 ";

		updateNotAccepted = String.format(updateNotAccepted, 8, "NOT ACCEPTED: TAXONOMICALLY VALUELESS LOCAL OR SINGULAR BIOTYPE", emStr, oldStatusFilter);

		int updated = state.getConfig().getDestination().update(updateNotAccepted);

		//alternative names

		String updateAlternativeName = "UPDATE Taxon SET TaxonStatusFk = 1, TaxonStatusCache = 'accepted' " +

				" FROM RelTaxon RIGHT OUTER JOIN Taxon ON RelTaxon.TaxonFk1 = Taxon.TaxonId " +

				" WHERE (RelTaxon.RelTaxonQualifierFk = 17) AND (Taxon.TaxonStatusFk = %s) ";

		updateAlternativeName = String.format(updateAlternativeName, oldStatusFilter);

		System.out.println(updateAlternativeName);

		updated = state.getConfig().getDestination().update(updateAlternativeName);

		String updateSynonyms = " UPDATE Taxon SET TaxonStatusFk = 2, TaxonStatusCache = 'synonym' " +

					" FROM RelTaxon RIGHT OUTER JOIN Taxon ON RelTaxon.TaxonFk1 = Taxon.TaxonId " +

					" WHERE (RelTaxon.RelTaxonQualifierFk in (1, 3)) AND (Taxon.TaxonStatusFk = %s)";

		updateSynonyms = String.format(updateSynonyms, oldStatusFilter);

		System.out.println(updateSynonyms);

		updated = state.getConfig().getDestination().update(updateSynonyms);

		// cache citation  - check if this can't be done in getCacheCitation

		// cache citation - FE

//		String updateCacheCitationFE = " UPDATE Taxon " +

//				" SET CacheCitation = IsNull(SpeciesExpertName + '. ', '') + WebShowName + '. Accessed through: Fauna Europaea at http://www.faunaeur.org/full_results.php?id=' + cast(TempFE_Id as varchar) " +

//				" WHERE OriginalDb = '%s'";

//		updateCacheCitationFE = String.format(updateCacheCitationFE, feStr);

//		updated = state.getConfig().getDestination().update(updateCacheCitationFE);

		// cache citation - EM

		String updateCacheCitationEM = " UPDATE Taxon " +

				" SET CacheCitation = SpeciesExpertName + ' ' + WebShowName + '. Accessed through: Euro+Med PlantBase at http://ww2.bgbm.org/euroPlusMed/PTaxonDetail.asp?UUID=' + GUID " +

				" WHERE OriginalDb = '%s'";

		updateCacheCitationEM = String.format(updateCacheCitationEM, emStr);

		updated = state.getConfig().getDestination().update(updateCacheCitationEM);

		// cache citation - IF

//		String updateCacheCitationIF = " UPDATE Taxon " +

//				" SET CacheCitation = IsNull(SpeciesExpertName + ' ', '') + WebShowName + '. Accessed through: Index Fungorum at http://www.indexfungorum.org/names/NamesRecord.asp?RecordID=' + cast(TempIF_Id as varchar) " +

//				" WHERE OriginalDb = '%s'";

//		updateCacheCitationIF = String.format(updateCacheCitationIF, ifStr);

//		updated = state.getConfig().getDestination().update(updateCacheCitationIF);

		return true;

	}

	@Override

	protected boolean isIgnore(PesiExportState state) {

		return ! state.getConfig().isDoTaxa();

	}

}