Revision 548a9ae0
Added by Andreas Müller almost 7 years ago
| cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/faunaEuropaea/FaunaEuropaeaAdditionalTaxonDataImport.java | ||
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import eu.etaxonomy.cdm.database.ICdmDataSource; |
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import eu.etaxonomy.cdm.model.common.CdmBase; |
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import eu.etaxonomy.cdm.model.name.INonViralName; |
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import eu.etaxonomy.cdm.model.name.ITaxonNameBase; |
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import eu.etaxonomy.cdm.model.name.NonViralName; |
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import eu.etaxonomy.cdm.model.name.TaxonNameBase; |
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import eu.etaxonomy.cdm.model.taxon.Taxon; |
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/** |
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* @author a.babadshanjan |
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* @created 21.08.2010 |
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* @version 1.0 |
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*/ |
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@Component |
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public class FaunaEuropaeaAdditionalTaxonDataImport extends FaunaEuropaeaImportBase {
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private static final long serialVersionUID = -6734273038256432559L; |
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private static final Logger logger = Logger.getLogger(FaunaEuropaeaAdditionalTaxonDataImport.class);
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private static final Logger logger = Logger.getLogger(FaunaEuropaeaAdditionalTaxonDataImport.class);
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// private static final String parentPluralString = "Synonyms"; |
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private static final String pluralString = "InfraGenericEpithets"; |
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//private static final String acceptedTaxonUUID = "A9C24E42-69F5-4681-9399-041E652CF338"; // any accepted taxon uuid, taken from original fauna europaea database |
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/* (non-Javadoc) |
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* @see eu.etaxonomy.cdm.io.common.CdmIoBase#doCheck(eu.etaxonomy.cdm.io.common.IImportConfigurator) |
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*/ |
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@Override |
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protected boolean doCheck(FaunaEuropaeaImportState state) {
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boolean result = true; |
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FaunaEuropaeaImportConfigurator fauEuConfig = state.getConfig(); |
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logger.warn("Checking for Taxa not yet fully implemented");
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// result &= checkTaxonStatus(fauEuConfig); |
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return result; |
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} |
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* @return |
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*/ |
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private void processAdditionalInfraGenericEpithets(FaunaEuropaeaImportState state) {
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int count = 0; |
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int pageSize = 1000; |
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Set<UUID> uuidSet = new HashSet<UUID>(); |
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FaunaEuropaeaImportConfigurator fauEuConfig = state.getConfig(); |
| ... | ... | |
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if (!uuidSet.isEmpty()){
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taxonNames = getNameService().find(uuidSet); |
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for (TaxonNameBase taxonName : taxonNames) {
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for (TaxonNameBase<?,?> taxonName : taxonNames) {
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// Check whether its taxonName has an infraGenericEpithet |
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if (taxonName != null && (taxonName.isInstanceOf(NonViralName.class))) {
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NonViralName targetNonViralName = CdmBase.deproxy(taxonName, NonViralName.class); |
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INonViralName targetNonViralName = CdmBase.deproxy(taxonName, NonViralName.class);
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String infraGenericEpithet = targetNonViralName.getInfraGenericEpithet(); |
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if (infraGenericEpithet == null) {
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String genusOrUninomial = targetNonViralName.getGenusOrUninomial(); |
| ... | ... | |
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"*", "*", null, pageSize, 1); |
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if (foundTaxa.size() == 1) {
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// one matching Taxon found |
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TaxonBase taxon = foundTaxa.iterator().next(); |
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TaxonBase<?> taxon = foundTaxa.iterator().next();
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if (taxon != null) {
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TaxonNameBase name = taxon.getName(); |
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ITaxonNameBase name = taxon.getName();
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if (name != null && name.isInstanceOf(NonViralName.class)) {
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NonViralName nonViralName = CdmBase.deproxy(name, NonViralName.class); |
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INonViralName nonViralName = CdmBase.deproxy(name, NonViralName.class);
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infraGenericEpithet = nonViralName.getInfraGenericEpithet(); |
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// set infraGenericEpithet |
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// targetNonViralName.setInfraGenericEpithet(infraGenericEpithet); |
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logger.debug("Added an InfraGenericEpithet to this TaxonName: " + taxonName.getUuid() + " (" + taxonName.getTitleCache() + ")");
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count++; |
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} |
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} |
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} else if (foundTaxa.size() > 1) {
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logger.warn("Multiple taxa match search criteria: " + taxonName.getUuid() + " (" + taxonName.getTitleCache() + ")");
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for (TaxonBase foundTaxon : foundTaxa) {
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for (TaxonBase<?> foundTaxon : foundTaxa) {
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logger.warn(foundTaxon.getUuid() + ", " + foundTaxon.getTitleCache()); |
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} |
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} else if (foundTaxa.size() == 0) {
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return; |
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} |
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/* (non-Javadoc) |
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* @see eu.etaxonomy.cdm.io.common.CdmIoBase#isIgnore(eu.etaxonomy.cdm.io.common.IoStateBase) |
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*/ |
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@Override |
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protected boolean isIgnore(FaunaEuropaeaImportState state) {
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return ! state.getConfig().isDoTaxa(); |
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} |
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} |
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