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/**
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* Copyright (C) 2017 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.greece;
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import java.util.List;
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import org.apache.log4j.Logger;
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import org.springframework.stereotype.Component;
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import eu.etaxonomy.cdm.io.common.utils.ImportDeduplicationHelper;
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import eu.etaxonomy.cdm.io.mexico.SimpleExcelTaxonImport;
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import eu.etaxonomy.cdm.io.mexico.SimpleExcelTaxonImportState;
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import eu.etaxonomy.cdm.model.name.TaxonName;
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import eu.etaxonomy.cdm.persistence.query.MatchMode;
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import eu.etaxonomy.cdm.strategy.exceptions.StringNotParsableException;
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import eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl;
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/**
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* @author a.mueller
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* @since 08.12.2017
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*
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*/
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@Component
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public class GreeceGenusAuthorImport
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extends SimpleExcelTaxonImport<GreeceGenusAuthorImportConfigurator>{
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private static final Logger logger = Logger.getLogger(GreeceGenusAuthorImport.class);
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private static final long serialVersionUID = 1173327042682886814L;
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private ImportDeduplicationHelper<SimpleExcelTaxonImportState> dedupHelper;
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private NonViralNameParserImpl parser = NonViralNameParserImpl.NewInstance();
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/**
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* {@inheritDoc}
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*/
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@Override
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protected void firstPass(SimpleExcelTaxonImportState<GreeceGenusAuthorImportConfigurator> state) {
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String genus = state.getOriginalRecord().get("Genus");
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String author = state.getOriginalRecord().get("Author");
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List<TaxonName> existingNames = getNameService().findNamesByNameCache(genus, MatchMode.EXACT, null);
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if (existingNames.size() != 1){
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logger.warn("Name '"+genus+"' has not exactly one record, but " + existingNames.size());
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}else{
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TaxonName name = existingNames.iterator().next();
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// TaxonName name = TaxonNameFactory.NewBotanicalInstance(Rank.GENUS()) ;
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// name.setGenusOrUninomial("Genus");
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try {
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parser.parseAuthors(name, author);
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getDedupHelper(state).replaceAuthorNamesAndNomRef(state, name);
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name.addImportSource(null, null, state.getConfig().getSourceReference(), String.valueOf(state.getCurrentLine()));
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} catch (StringNotParsableException e) {
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// TODO Auto-generated catch block
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e.printStackTrace();
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// throw new RuntimeException(e);
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}
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}
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}
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/**
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* @param state
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* @return
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*/
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private ImportDeduplicationHelper<SimpleExcelTaxonImportState> getDedupHelper(SimpleExcelTaxonImportState<GreeceGenusAuthorImportConfigurator> state) {
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if (this.dedupHelper == null){
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dedupHelper = ImportDeduplicationHelper.NewInstance(this, state);
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}
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return this.dedupHelper;
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}
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}
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