EDIT

/**

* Copyright (C) 2007 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.app.iapt;

import java.io.File;

import java.net.URI;

import java.net.URISyntaxException;

import java.util.UUID;

import eu.etaxonomy.cdm.common.monitor.DefaultProgressMonitor;

import eu.etaxonomy.cdm.database.DatabaseTypeEnum;

import eu.etaxonomy.cdm.model.common.TimePeriod;

import org.apache.log4j.Logger;

import eu.etaxonomy.cdm.app.common.CdmDestinations;

import eu.etaxonomy.cdm.database.DbSchemaValidation;

import eu.etaxonomy.cdm.database.ICdmDataSource;

import eu.etaxonomy.cdm.io.common.CdmDefaultImport;

import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;

import eu.etaxonomy.cdm.io.iapt.IAPTImportConfigurator;

import eu.etaxonomy.cdm.model.reference.Reference;

import eu.etaxonomy.cdm.model.reference.ReferenceFactory;

/**

 * @author a.kohlbecker

 * @since Jul 26, 2016

 *

 */

public class IAPTActivator {

    private static final Logger logger = Logger.getLogger(IAPTActivator.class);

    public static final String DATA_FILE_FULL = "Registration_DB_from_BGBM17.xls";

    public static final String DATA_FILE_0_100 = "iapt-100.xls";

    public static final String DATA_ENCODING_PROBLEMS = "encoding-problems.xls";

    public static final String DATA_IAPT_TYPES_100 = "iapt-types-100.xls";

    public static final String DATA_TYPE_LEG_100 = "iapt-type-leg-100.xls";

    public static final String DATA_NAME_TYPES = "iapt-name-types.xls";

    public static final String DATA_SINGLE = "single.xls";

    public static final String DATA_FILE = DATA_FILE_FULL;

    public static final Boolean algaeOnly = false;

    // ====================================================================================

    //database validation status (create, update, validate ...)

    static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;

    static ICdmDataSource cdmDestination = null;

    static {

        DatabaseTypeEnum dbType = DatabaseTypeEnum.MySQL;

        String cdmServer = "127.0.0.1";

        String cdmDB = "cdm_algea_registry";

        String cdmUserName = "edit";

        cdmDestination =  CdmDestinations.makeDestination(dbType, cdmServer, cdmDB, -1, cdmUserName, null);

        // cdmDestination = CdmDestinations.localH2();

    }

    static boolean invers = true;

    static boolean include = !invers;

    //classification

    static final UUID classificationUuid = UUID.fromString("8c51efb4-3d67-4bea-8f87-4bc1cba1310d");

    private static final String classificationName = "IAPT";

    static final String sourceReferenceTitle = "IAPT Import";

    //check - import

    static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;

    private void doImport(ICdmDataSource cdmDestination){

        URI source = fileURI();

        Reference secRef = ReferenceFactory.newDatabase();

        secRef.setTitle("IAPT");

        Reference sourceRef = ReferenceFactory.newDatabase();

        sourceRef.setTitle("IAPT Registration of Plant Names Database");

        sourceRef.setDatePublished(TimePeriod.NewInstance(1998, 2016));

        sourceRef.setOrganization("International Association for Plant Taxonomy");

        try {

            sourceRef.setUri(new URI("http://archive.bgbm.org/scripts/ASP/registration/regSearch.asp"));

        } catch (URISyntaxException e) {

            e.printStackTrace();

        }

        //make Source

        IAPTImportConfigurator config= IAPTImportConfigurator.NewInstance(source, cdmDestination);

        config.setClassificationUuid(classificationUuid);

        config.setClassificationName(classificationName);

        config.setCheck(check);

        config.setDbSchemaValidation(hbm2dll);

        config.setSourceReference(sourceRef);

        config.setSecReference(secRef);

        config.setProgressMonitor(DefaultProgressMonitor.NewInstance());

        config.setDoAlgeaeOnly(algaeOnly);

        // config.setBatchSize(100); // causes Error during managed flush [Don't change the reference to a collection with delete-orphan enabled : eu.etaxonomy.cdm.model.taxon.TaxonNode.annotations]

        CdmDefaultImport<IAPTImportConfigurator> myImport = new CdmDefaultImport<>();

        doSingleSource(fileURI(), config, myImport);

        System.exit(0);

    }

    /**

     * @param source

     * @param config

     * @param myImport

     */

    private void doSingleSource(URI source, IAPTImportConfigurator config, CdmDefaultImport<IAPTImportConfigurator> myImport) {

        config.setSource(source);

        String fileName = source.toString();

        fileName = fileName.substring(fileName.lastIndexOf("/") + 1 );

        String message = "Start import from ("+ fileName + ") ...";

        System.out.println(message);

        logger.warn(message);

        config.setSourceReference(getSourceReference(fileName));

        myImport.invoke(config);

        System.out.println("End import from ("+ source.toString() + ")...");

    }

    private final Reference inRef = ReferenceFactory.newGeneric();

    private Reference getSourceReference(String string) {

        Reference result = ReferenceFactory.newGeneric();

        result.setTitleCache(string, true);

        result.setInReference(inRef);

        inRef.setTitleCache(sourceReferenceTitle, true);

        return result;

    }

    public static URI fileURI() {

        File f = new File(System.getProperty("user.home") + "/data/Projekte/Algea Name Registry/registry/sources/IAPT/" + DATA_FILE);

        return f.toURI();

    }

    /**

     * @param args

     */

    public static void main(String[] args) {

        IAPTActivator me = new IAPTActivator();

        me.doImport(cdmDestination);

    }

}