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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.berlinModel.in;
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import java.sql.ResultSet;
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import java.sql.SQLException;
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import java.util.Collection;
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import java.util.HashMap;
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import java.util.Map;
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import org.apache.commons.lang.StringUtils;
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import org.apache.log4j.Logger;
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import org.springframework.stereotype.Component;
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import eu.etaxonomy.cdm.common.CdmUtils;
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import eu.etaxonomy.cdm.io.berlinModel.in.validation.BerlinModelAuthorImportValidator;
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import eu.etaxonomy.cdm.io.common.IOValidator;
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import eu.etaxonomy.cdm.io.common.ImportHelper;
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import eu.etaxonomy.cdm.io.common.ResultSetPartitioner;
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import eu.etaxonomy.cdm.model.agent.Person;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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import eu.etaxonomy.cdm.model.common.Extension;
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import eu.etaxonomy.cdm.model.common.ExtensionType;
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import eu.etaxonomy.cdm.model.common.TimePeriod;
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import eu.etaxonomy.cdm.strategy.parser.TimePeriodParser;
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/**
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* Supported attributes:
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* - AuthorId, Abbrev, FirstName, LastName, Dates, AreaOfInterest, NomStandard, createUpdateNotes
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*
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* @author a.mueller
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* @created 20.03.2008
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* @version 1.0
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*/
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@Component
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public class BerlinModelAuthorImport extends BerlinModelImportBase {
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private static final boolean BLANK_TO_NULL = true;
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private static final Logger logger = Logger.getLogger(BerlinModelAuthorImport.class);
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public static final String NAMESPACE = "Author";
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private static int recordsPerLog = 5000;
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private static final String dbTableName = "Author";
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private static final String pluralString = "Authors";
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public BerlinModelAuthorImport(){
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super(dbTableName, pluralString);
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportBase#getIdQuery()
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*/
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@Override
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protected String getIdQuery(BerlinModelImportState state) {
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String result = " SELECT authorId FROM " + getTableName();
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if (StringUtils.isNotBlank(state.getConfig().getAuthorFilter())){
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result += " WHERE " + state.getConfig().getAuthorFilter();
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}
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return result;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportBase#getRecordQuery(eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator)
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*/
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@Override
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protected String getRecordQuery(BerlinModelImportConfigurator config) {
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String strRecordQuery =
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" SELECT * " +
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" FROM " + dbTableName + " " +
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" WHERE authorId IN ( " + ID_LIST_TOKEN + " )";
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return strRecordQuery;
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}
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/**
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* @param partitioner
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* @throws SQLException
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*/
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//TODO public ??
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public boolean doPartition(ResultSetPartitioner partitioner, BerlinModelImportState state) {
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String dbAttrName;
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String cdmAttrName;
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Map<Integer, Person> personMap = new HashMap<Integer, Person>();
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boolean success = true;
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ResultSet rs = partitioner.getResultSet();
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try{
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//for each author
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while (rs.next()){
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// partitioner.doLogPerLoop(recordsPerLog, pluralString);
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//create Agent element
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int authorId = rs.getInt("AuthorId");
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Person author = Person.NewInstance();
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dbAttrName = "Abbrev";
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cdmAttrName = "nomenclaturalTitle";
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success &= ImportHelper.addStringValue(rs, author, dbAttrName, cdmAttrName, BLANK_TO_NULL);
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dbAttrName = "FirstName";
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cdmAttrName = "firstname";
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success &= ImportHelper.addStringValue(rs, author, dbAttrName, cdmAttrName, BLANK_TO_NULL);
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dbAttrName = "LastName";
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cdmAttrName = "lastname";
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success &= ImportHelper.addStringValue(rs, author, dbAttrName, cdmAttrName, BLANK_TO_NULL);
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String dates = rs.getString("dates");
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if (dates != null){
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dates.trim();
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TimePeriod lifespan = TimePeriodParser.parseString(dates);
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author.setLifespan(lifespan);
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}
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// //AreaOfInterest
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String areaOfInterest = rs.getString("AreaOfInterest");
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if (CdmUtils.isNotEmpty(areaOfInterest)){
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Extension datesExtension = Extension.NewInstance(author, areaOfInterest, ExtensionType.AREA_OF_INTREREST());
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}
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//nomStandard
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String nomStandard = rs.getString("NomStandard");
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if (CdmUtils.isNotEmpty(nomStandard)){
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Extension nomStandardExtension = Extension.NewInstance(author, nomStandard, ExtensionType.NOMENCLATURAL_STANDARD());
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}
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//initials
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String initials = null;
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for (int j = 1; j <= rs.getMetaData().getColumnCount(); j++){
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String label = rs.getMetaData().getColumnLabel(j);
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if (label.equalsIgnoreCase("Initials") || label.equalsIgnoreCase("Kürzel")){
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initials = rs.getString(j);
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break;
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}
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}
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if (StringUtils.isNotBlank(initials)){
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Extension initialsExtension = Extension.NewInstance(author, initials, ExtensionType.ABBREVIATION());
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}
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//created, notes
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doIdCreatedUpdatedNotes(state, author, rs, authorId, NAMESPACE);
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personMap.put(authorId, author);
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} //while rs.hasNext()
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//logger.info("save " + i + " "+pluralString + " ...");
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getAgentService().save((Collection)personMap.values());
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}catch(Exception ex){
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logger.error(ex.getMessage());
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ex.printStackTrace();
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success = false;
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}
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return success;
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}
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@Override
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public Map<Object, Map<String, ? extends CdmBase>> getRelatedObjectsForPartition(ResultSet rs, BerlinModelImportState state) {
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Map<Object, Map<String, ? extends CdmBase>> result = new HashMap<Object, Map<String, ? extends CdmBase>>();
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// no related objects exist
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return result;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.CdmIoBase#doCheck(eu.etaxonomy.cdm.io.common.IImportConfigurator)
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*/
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@Override
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protected boolean doCheck(BerlinModelImportState state){
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IOValidator<BerlinModelImportState> validator = new BerlinModelAuthorImportValidator();
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return validator.validate(state);
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.CdmIoBase#isIgnore(eu.etaxonomy.cdm.io.common.IImportConfigurator)
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*/
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protected boolean isIgnore(BerlinModelImportState state){
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return ! state.getConfig().isDoAuthors();
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}
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}
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