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Revision 51688d00

Added by Andreas Müller almost 7 years ago

ref #6368 , ref #6671, ref #6630 adapt pesi to no taxon name model

View differences:

cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/indexFungorum/IndexFungorumSubSpeciesImport.java
13 13 
import eu.etaxonomy.cdm.api.service.config.MatchingTaxonConfigurator;
14 14 
import eu.etaxonomy.cdm.hibernate.HibernateProxyHelper;
15 15 
import eu.etaxonomy.cdm.model.common.CdmBase;
16 
import eu.etaxonomy.cdm.model.name.NonViralName;
17 
import eu.etaxonomy.cdm.model.name.TaxonNameBase;
16 
import eu.etaxonomy.cdm.model.name.TaxonName;
18 17 
import eu.etaxonomy.cdm.model.taxon.Classification;
19 18 
import eu.etaxonomy.cdm.model.taxon.Taxon;
20 19 
import eu.etaxonomy.cdm.model.taxon.TaxonBase;
......
28 27 
	private static final Logger logger = Logger.getLogger(IndexFungorumSpeciesImport.class);
29 28 

  		




  30
  29
  
    
	private static final String pluralString = "subSpecies";


  		




  31
  
  
    
	


  		




  32
  
  
    
	


  		




  
  30
  
    

  		




  
  31
  
    

  		




  33
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	public IndexFungorumSubSpeciesImport(){


  		




  34
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		super(pluralString, null, null);


  		




  35
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  36
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	}


  		




  37
  
  
    
	


  		




  
  36
  
    

  		




  38
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	public IndexFungorumSubSpeciesImport(String pluralString,


  		




  39
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			String dbTableName, Class cdmTargetClass) {


  		




  40
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		super(pluralString, dbTableName, cdmTargetClass);


  		




  41
  
  
    
		


  		




  
  40
  
    

  		




  42
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	}


  		




  43
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  44
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	@Override


  		




  ......




  65
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		// TODO Auto-generated method stub


  		




  66
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		return false;


  		




  67
  66
  
    
	}


  		




  68
  
  
    
	


  		




  
  67
  
    

  		




  69
  68
  
    
	@Override


  		




  70
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    protected void doInvoke(IndexFungorumImportState state){


  		




  71
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		System.out.println("create infraspecific - specific relationship: " + state.getInfraspecificTaxaUUIDs().size() + " taxa");


  		




  72
  
  
    
		


  		




  
  71
  
    

  		




  73
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		 List<String> propertyPaths = new ArrayList<String>();


  		




  74
  73
  
    
         propertyPaths.add("taxonNodes.*");


  		




  75
  74
  
    
         propertyPaths.add("taxonNodes.classification");


  		




  ......




  82
  81
  
    
        	TransactionStatus txStatus = startTransaction();


  		




  83
  82
  
    
        	Taxon infraspecificTaxon = (Taxon)getTaxonService().load(infraspecificTaxonUUID, propertyPaths);


  		




  84
  83
  
    
            //HibernateProxyHelper.deproxy(infraspecificTaxon);


  		




  85
  
  
    
            TaxonNameBase name = infraspecificTaxon.getName();


  		




  
  84
  
    
            TaxonName name = infraspecificTaxon.getName();


  		




  86
  85
  
    

  		




  87
  86
  
    
            UUID uuid = getNameService().saveOrUpdate(name);


  		




  88
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            String parentNameString = getParentNameInfraSpecific(name);


  		




  89
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            System.out.println("Parent name string: " + parentNameString);


  		




  90
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            MatchingTaxonConfigurator matchingConfig = new MatchingTaxonConfigurator();


  		




  91
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            matchingConfig.setTaxonNameTitle(parentNameString);


  		




  92
  
  
    
           


  		




  
  91
  
    

  		




  93
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            matchingConfig.setPropertyPath(propertyPaths);


  		




  94
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            List<TaxonBase> potentialParents = getTaxonService().findTaxaByName(matchingConfig);


  		




  95
  94
  
    
                    //Taxon.class, parentNameString + "sec. ", MatchMode.BEGINNING, , pageSize, pageNumber, orderHints, propertyPaths)


  		




  ......




  97
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            if (potentialParents.size()>1){


  		




  98
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                for (TaxonBase potentialParent:potentialParents){


  		




  99
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                    if (potentialParent.getTitleCache().equals(parentNameString + " sec*")){


  		




  100
  
  
    
                        classification.addParentChild((Taxon)potentialParent, (Taxon)infraspecificTaxon, null, null);


  		




  
  99
  
    
                        classification.addParentChild((Taxon)potentialParent, infraspecificTaxon, null, null);


  		




  101
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                    }


  		




  102
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                }


  		




  103
  102
  
    
            }else if (!potentialParents.isEmpty()){


  		




  ......




  115
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     * @param taxon


  		




  116
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     * @return


  		




  117
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     */


  		




  118
  
  
    
    private String getParentNameInfraSpecific(TaxonNameBase taxonName){


  		




  119
  
  
    
       NonViralName<NonViralName> name =  HibernateProxyHelper.deproxy(taxonName, NonViralName.class);


  		




  
  117
  
    
    private String getParentNameInfraSpecific(TaxonName taxonName){


  		




  
  118
  
    
        TaxonName name =  HibernateProxyHelper.deproxy(taxonName);


  		




  120
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       String parentName = name.getGenusOrUninomial() + " " + name.getSpecificEpithet();


  		




  121
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  122
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       return parentName;


  		












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