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Revision 51688d00

Added by Andreas Müller almost 7 years ago

ref #6368 , ref #6671, ref #6630 adapt pesi to no taxon name model

View differences:

cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/faunaEuropaea/FaunaEuropaeaHeterotypicSynonymImport.java
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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
......
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import eu.etaxonomy.cdm.io.common.ICdmImport;
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import eu.etaxonomy.cdm.model.name.HomotypicalGroup;
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import eu.etaxonomy.cdm.model.name.NameRelationship;
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import eu.etaxonomy.cdm.model.name.TaxonNameBase;
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import eu.etaxonomy.cdm.model.name.TaxonName;
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import eu.etaxonomy.cdm.model.taxon.Synonym;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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import eu.etaxonomy.cdm.model.taxon.TaxonBase;
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/**


  		




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 * This class creates heterotypic synonymy relationships to the accepted taxon for 


  		




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 * basionym synonyms. 


  		




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 * 


  		




  
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 * This class creates heterotypic synonymy relationships to the accepted taxon for


  		




  
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 * basionym synonyms.


  		




  
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 *


  		




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 * @author a.babadshanjan


  		




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 * @created 22.09.2009


  		




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 * @version 1.0


  		




  ......




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	 */


  		




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	@Override


  		




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	protected void doInvoke(FaunaEuropaeaImportState state) {


  		




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		TransactionStatus txStatus = null;


  		




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		List<Synonym> synonymList = null;


  		




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		Set<Taxon> taxonSet = null;


  		




  ......




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					taxonSet = new HashSet<Taxon>(limit);


  		




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				}


  		




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				if (((i % limit) == 0 && i != 1 ) || i == nbrOfSynonyms) { 


  		




  
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				if (((i % limit) == 0 && i != 1 ) || i == nbrOfSynonyms) {


  		




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					HomotypicalGroup homotypicalGroup = null;


  		




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					Set<TaxonNameBase> basionyms = null;


  		




  
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					Set<TaxonName> basionyms = null;


  		




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					Set<NameRelationship> nameRelations = null;


  		




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					TaxonNameBase basionym = null;


  		




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					Set<TaxonBase> taxonBases = null;


  		




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					TaxonBase taxonBase = null;


  		




  
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					TaxonName basionym = null;


  		




  
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					Set<Taxon> taxonBases = null;


  		




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					Taxon acceptedTaxon = null;


  		




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					TaxonNameBase synonymName = null;


  		




  
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					TaxonName synonymName = null;


  		




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					NameRelationship nameRelation = null;


  		




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					TaxonNameBase acceptedName = null;


  		




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					TaxonName acceptedName = null;


  		




  
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					for (TaxonBase synonym : synonymList) {


  		




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						synonymName = synonym.getName();


  		




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						if (synonymName.isGroupsBasionym()) {


  		




  ......




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								}


  		




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								taxonBases = acceptedName.getTaxa();


  		




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								if (taxonBases != null && taxonBases.iterator().hasNext()) {


  		




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									taxonBase = taxonBases.iterator().next();


  		




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									acceptedTaxon = taxonBase.deproxy(taxonBase, Taxon.class);


  		




  
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								    acceptedTaxon = taxonBases.iterator().next();


  		




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									Set <Synonym> synonyms = acceptedTaxon.getSynonyms();


  		




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									if (!synonyms.contains(synonym)){


  		




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									//TODO: Achtung!!!!! dies wird auch bei homotypischen Synonymen aufgerufen! Dadurch wird ein weiteres Synonym erzeugt


  		




  ......




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							}


  		




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						}


  		




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					}


  		




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					getTaxonService().save((Collection)taxonSet);


  		




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					taxonSet = null;


  		




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					synonymList = null;


  		




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					commitTransaction(txStatus);


  		




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					if(logger.isInfoEnabled()) { 


  		




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						logger.info("i = " + i + " - Transaction committed"); 


  		




  
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					if(logger.isInfoEnabled()) {


  		




  
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						logger.info("i = " + i + " - Transaction committed");


  		




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					}


  		




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				}


  		




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