Revision 50818ab7
Added by Katja Luther over 8 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/app/wp6/diptera/DipteraActivator.java | ||
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/** |
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* Copyright (C) 2007 EDIT |
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* European Distributed Institute of Taxonomy
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* European Distributed Institute of Taxonomy |
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* http://www.e-taxonomy.eu |
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*
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* |
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* The contents of this file are subject to the Mozilla Public License Version 1.1 |
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* See LICENSE.TXT at the top of this package for the full license terms. |
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*/ |
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import eu.etaxonomy.cdm.api.application.ICdmApplicationConfiguration; |
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import eu.etaxonomy.cdm.app.berlinModelImport.BerlinModelSources; |
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import eu.etaxonomy.cdm.app.common.CdmDestinations; |
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import eu.etaxonomy.cdm.app.berlinModelImport.TreeCreator; |
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import eu.etaxonomy.cdm.app.common.CdmDestinations; |
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import eu.etaxonomy.cdm.common.CdmUtils; |
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import eu.etaxonomy.cdm.database.DbSchemaValidation; |
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import eu.etaxonomy.cdm.database.ICdmDataSource; |
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import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK; |
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import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES; |
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import eu.etaxonomy.cdm.io.common.IImportConfigurator.EDITOR; |
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import eu.etaxonomy.cdm.io.common.ImportResult; |
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import eu.etaxonomy.cdm.io.common.Source; |
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import eu.etaxonomy.cdm.model.description.Feature; |
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import eu.etaxonomy.cdm.model.description.FeatureNode; |
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/** |
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* TODO add the following to a wiki page: |
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* HINT: If you are about to import into a mysql data base running under windows and if you wish to dump and restore the resulting data bas under another operation systen
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* HINT: If you are about to import into a mysql data base running under windows and if you wish to dump and restore the resulting data bas under another operation systen |
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* you must set the mysql system variable lower_case_table_names = 0 in order to create data base with table compatible names. |
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*
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*
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* |
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* |
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* @author a.mueller |
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* |
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*/ |
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static final int sourceSecId = 1000000; |
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static final UUID featureTreeUuid = UUID.fromString("ae9615b8-bc60-4ed0-ad96-897f9226d568");
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static final Object[] featureKeyList = new Integer[]{1, 4, 5, 10, 11, 12, 99};
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static boolean useClassification = true; |
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//editor - import |
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static final EDITOR editor = EDITOR.EDITOR_AS_EDITOR; |
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static final boolean ignoreNull = true; |
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//update citations ? |
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static final boolean updateCitations = true; |
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//include collections and add to specimen |
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static final boolean updateCollections = true; |
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//authors |
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static final boolean doAuthors = true; |
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//references |
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static final boolean doRelNames = true; |
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static final boolean doNameStatus = true; |
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static final boolean doTypes = true; |
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static final boolean doNameFacts = true;
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static final boolean doNameFacts = true; |
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//taxa |
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static final boolean doTaxa = true; |
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static final boolean doRelTaxa = true; |
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static final boolean doFacts = true; |
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static final boolean doOccurences = false; //There are no occurrence data in diptera |
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static final boolean doCommonNames = false; //no common names in diptera |
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//etc. |
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static final boolean doMarker = true; |
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static final boolean doUser = true; |
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// **************** SELECTED ********************* |
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// //authors |
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// static final boolean doAuthors = false; |
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// //references |
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// static final boolean doNameStatus = false; |
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// static final boolean doTypes = true; |
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// static final boolean doNameFacts = false; |
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//
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// |
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// //taxa |
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// static final boolean doTaxa = false; |
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// static final boolean doRelTaxa = false; |
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// static final boolean doFacts = false; |
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// static final boolean doOccurences = false; |
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//
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// |
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// //etc. |
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// static final boolean doMarker = false; |
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// static final boolean doUser = true; |
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// static final boolean doUser = true; |
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/** |
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* @param destination
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* @param destination |
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* @param args |
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*/ |
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public boolean doImport(ICdmDataSource destination) {
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boolean success = true;
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public ImportResult doImport(ICdmDataSource destination) {
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ImportResult success;
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System.out.println("Start import from BerlinModel("+ berlinModelSource.getDatabase() + ") ...");
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//make BerlinModel Source |
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Source source = berlinModelSource; |
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BerlinModelImportConfigurator bmImportConfigurator = BerlinModelImportConfigurator.NewInstance(source, destination); |
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bmImportConfigurator.setClassificationUuid(treeUuid); |
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bmImportConfigurator.setSourceSecId(sourceSecId); |
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bmImportConfigurator.setNomenclaturalCode(nomenclaturalCode); |
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bmImportConfigurator.setDoTypes(doTypes); |
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bmImportConfigurator.setDoNameFacts(doNameFacts); |
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bmImportConfigurator.setUseClassification(useClassification); |
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bmImportConfigurator.setDoTaxa(doTaxa); |
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bmImportConfigurator.setDoRelTaxa(doRelTaxa); |
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bmImportConfigurator.setDoFacts(doFacts); |
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bmImportConfigurator.setDoOccurrence(doOccurences); |
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bmImportConfigurator.setDoCommonNames(doCommonNames); |
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bmImportConfigurator.setDoMarker(doMarker); |
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bmImportConfigurator.setDoUser(doUser); |
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bmImportConfigurator.setEditor(editor); |
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bmImportConfigurator.setNameTypeDesignationStatusMethod(nameTypeDesignationStatusMethod); |
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} catch (Exception e) {
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e.printStackTrace(); |
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return false; |
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success = new ImportResult(); |
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success.setSuccess(false); |
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return success; |
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} |
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bmImportConfigurator.setDbSchemaValidation(hbm2dll); |
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bmImportConfigurator.setCheck(check); |
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// invoke import |
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CdmDefaultImport<BerlinModelImportConfigurator> bmImport = new CdmDefaultImport<BerlinModelImportConfigurator>(); |
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success &= bmImport.invoke(bmImportConfigurator);
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success = bmImport.invoke(bmImportConfigurator); |
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if (bmImportConfigurator.getCheck().equals(CHECK.CHECK_AND_IMPORT) || bmImportConfigurator.getCheck().equals(CHECK.IMPORT_WITHOUT_CHECK) ){
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ICdmApplicationConfiguration app = bmImport.getCdmAppController(); |
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//parse distributions |
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if (doDistributionParser){
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DipteraDistributionParser dipDist = new DipteraDistributionParser(); |
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System.out.println("End import from BerlinModel ("+ source.getDatabase() + ")...");
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return success; |
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} |
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public static void main(String[] args) {
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boolean success = true;
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ImportResult success;
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logger.debug("start");
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ICdmDataSource destination = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination;
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ICdmDataSource destination = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination; |
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DipteraActivator me = new DipteraActivator(); |
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success &= me.doImport(destination);
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success = me.doImport(destination); |
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DipteraPostImportUpdater updater = new DipteraPostImportUpdater(); |
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if (updateCitations){
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success &= updater.updateCitations(destination);
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success = updater.updateCitations(destination); |
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} |
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if (updateCollections){
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success &= updater.updateCollections(destination);
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success = updater.updateCollections(destination); |
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} |
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} |
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private static NameTypeDesignationStatus nameTypeDesignationStatueMethod(String note){
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if (CdmUtils.isEmpty(note)){
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logger.warn("NameTypeDesignationStatus could not be defined for: " + note);
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return null; |
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} |
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} |
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} |
Also available in: Unified diff
adapt the import classes to the new return type ImportResult