Revision 5060cf7d
Added by Andreas Müller almost 9 years ago
app-import/src/main/java/eu/etaxonomy/cdm/app/redlist/BfnXmlTestActivator.java | ||
---|---|---|
1 |
/** |
|
2 |
* Copyright (C) 2007 EDIT |
|
3 |
* European Distributed Institute of Taxonomy |
|
4 |
* http://www.e-taxonomy.eu |
|
5 |
* |
|
6 |
* The contents of this file are subject to the Mozilla Public License Version 1.1 |
|
7 |
* See LICENSE.TXT at the top of this package for the full license terms. |
|
8 |
*/ |
|
9 |
|
|
10 |
package eu.etaxonomy.cdm.app.redlist; |
|
11 |
|
|
12 |
import java.net.URI; |
|
13 |
import java.net.URISyntaxException; |
|
14 |
import java.util.Arrays; |
|
15 |
import java.util.List; |
|
16 |
import java.util.Scanner; |
|
17 |
|
|
18 |
import org.apache.log4j.Logger; |
|
19 |
|
|
20 |
import eu.etaxonomy.cdm.app.common.CdmDestinations; |
|
21 |
import eu.etaxonomy.cdm.database.DbSchemaValidation; |
|
22 |
import eu.etaxonomy.cdm.database.ICdmDataSource; |
|
23 |
import eu.etaxonomy.cdm.io.common.CdmDefaultImport; |
|
24 |
import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK; |
|
25 |
import eu.etaxonomy.cdm.io.redlist.bfnXml.BfnXmlImportConfigurator; |
|
26 |
|
|
27 |
/** |
|
28 |
* @author a.oppermann |
|
29 |
* @created 16.07.2013 |
|
30 |
* @version 1.0 |
|
31 |
*/ |
|
32 |
public class BfnXmlTestActivator { |
|
33 |
|
|
34 |
private static final Logger logger = Logger.getLogger(BfnXmlTestActivator.class); |
|
35 |
|
|
36 |
//database validation status (create, update, validate ...) |
|
37 |
static DbSchemaValidation schemaValidation = DbSchemaValidation.CREATE; |
|
38 |
// static final ICdmDataSource cdmDestination = CdmDestinations.cdm_redlist_plant_localhost(); |
|
39 |
static final ICdmDataSource cdmDestination = CdmDestinations.localH2(); |
|
40 |
|
|
41 |
private final String filename; |
|
42 |
|
|
43 |
private static final String strSource = "/eu/etaxonomy/cdm/io/bfnXml/"; |
|
44 |
|
|
45 |
//check - import |
|
46 |
static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK; |
|
47 |
//authors |
|
48 |
static final boolean doMetaData = true; |
|
49 |
//names |
|
50 |
static final boolean doTaxonNames = true; |
|
51 |
//feature |
|
52 |
static final boolean doFeature = true; |
|
53 |
//feature |
|
54 |
static final boolean doAdditionalTerms = true; |
|
55 |
|
|
56 |
|
|
57 |
public BfnXmlTestActivator(String fileName){ |
|
58 |
filename = fileName; |
|
59 |
} |
|
60 |
|
|
61 |
private void doImport(){ |
|
62 |
System.out.println("Start import from BfnXML to "+ cdmDestination.getDatabase() + " ..."); |
|
63 |
|
|
64 |
//make Source |
|
65 |
URI source; |
|
66 |
try { |
|
67 |
source = this.getClass().getResource(strSource+filename).toURI(); |
|
68 |
ICdmDataSource destination = cdmDestination; |
|
69 |
|
|
70 |
BfnXmlImportConfigurator bfnImportConfigurator = BfnXmlImportConfigurator.NewInstance(source, destination); |
|
71 |
|
|
72 |
//if xmllist has two lists |
|
73 |
bfnImportConfigurator.setHasSecondList(false); |
|
74 |
bfnImportConfigurator.setNomenclaturalSig("Botanical");// "Zoological";//"Botanical"ICNAFP |
|
75 |
bfnImportConfigurator.setDoMetaData(doMetaData); |
|
76 |
bfnImportConfigurator.setDoTaxonNames(doTaxonNames); |
|
77 |
|
|
78 |
bfnImportConfigurator.setCheck(check); |
|
79 |
bfnImportConfigurator.setDbSchemaValidation(schemaValidation); |
|
80 |
|
|
81 |
// invoke import |
|
82 |
CdmDefaultImport<BfnXmlImportConfigurator> bfnImport = new CdmDefaultImport<BfnXmlImportConfigurator>(); |
|
83 |
bfnImport.invoke(bfnImportConfigurator); |
|
84 |
|
|
85 |
logger.warn("End"); |
|
86 |
System.out.println("End import from BfnXML ("+ source.toString() + ")..."); |
|
87 |
} catch (URISyntaxException e) { |
|
88 |
e.printStackTrace(); |
|
89 |
} |
|
90 |
|
|
91 |
} |
|
92 |
|
|
93 |
|
|
94 |
/** |
|
95 |
* @param args |
|
96 |
*/ |
|
97 |
public static void main(String[] args) { |
|
98 |
|
|
99 |
List<String> fileNames = Arrays.asList( |
|
100 |
// Plants |
|
101 |
"rldb_print_v4_0_1_0_Flechten_korr_verantw_syn.xml" |
|
102 |
// "rldb_print_v4_0_1_0_Lichenicole_verantw_syn.xml", |
|
103 |
// "rldb_print_v4_0_1_0_Makroalgen_150121_syn.xml", |
|
104 |
// "rldb_print_v4_0_1_0_Myxo_110708_korr_syn_neu.xml", |
|
105 |
// "rldb_print_v4_0_1_0_Saprophyten_verantw.xml" |
|
106 |
// |
|
107 |
// Animals |
|
108 |
// "rldb_print_v4_0_1_0_Ameisen_110609_rev120113_syn.xml" |
|
109 |
|
|
110 |
// "rldb_print_v4_0_1_0_artenarmeWeichtiergruppen_121127_verantw_syn.xml", |
|
111 |
// "rldb_print_v4_0_1_0_Asilidae_GMH_Wolff_110314_HGxls_120413_DF_korrV_Verantw_syn.xml", |
|
112 |
// "rldb_print_v4_0_1_0_Asseln_121128_verantw_syn.xml", |
|
113 |
// "rldb_print_v4_0_1_0_Asselspinnen_120907_verantw_syn.xml", |
|
114 |
// "rldb_print_v4_0_1_0_Bienen_PWKorr_HG_120413_DF_120612_syn.xml", |
|
115 |
// "rldb_print_v4_0_1_0_Binnenmollusken_0alle_120413_DF_syn.xml", |
|
116 |
// "rldb_print_v4_0_1_0_Blattoptera_140413_DF_syn.xml", |
|
117 |
// "rldb_print_v4_0_1_0_Empidoidea_120413_DF.xml", |
|
118 |
// "rldb_print_v4_0_1_0_Eulen_Korruebern_23-05-2012_KorrV_syn.xml", |
|
119 |
// |
|
120 |
//// "rldb_print_v4_0_1_0_Eulenspinner_Spanner_13-06-2012_KorrV_syn.xml", |
|
121 |
// |
|
122 |
// "rldb_print_v4_0_1_0_Flohkrebse_121128_verantw_syn.xml", |
|
123 |
// "rldb_print_v4_0_1_0_Heuschrecken_syn.xml", |
|
124 |
// "rldb_print_v4_0_1_0_Igelwuermer_120907_verantw.xml", |
|
125 |
// "rldb_print_v4_0_1_0_Kumazeen_120709_verantw_syn.xml", |
|
126 |
// "rldb_print_v4_0_1_0_Meeresfische_syn.xml", |
|
127 |
// "rldb_print_v4_0_1_0_Moostierchen_121128_verantw_syn.xml", |
|
128 |
// "rldb_print_v4_0_1_0_Muscheln_121128_verantw_syn.xml", |
|
129 |
// "rldb_print_v4_0_1_0_Nesseltiere_130104_verantw_syn.xml", |
|
130 |
// "rldb_print_v4_0_1_0_Ohrwuermer_DF_syn.xml", |
|
131 |
// "rldb_print_v4_0_1_0_Pflanzenwespen_280711_Autor_110815_HG2_120413_DF_syn.xml", |
|
132 |
// "rldb_print_v4_0_1_0_Pyraloidea_Februar_ 2012_Korruebern_MB_24-04-2012_syn.xml", |
|
133 |
// "rldb_print_v4_0_1_0_Schaedellose_120907_verantw_syn.xml", |
|
134 |
// "rldb_print_v4_0_1_0_Schnecken_130206_verantw_syn.xml", |
|
135 |
// "rldb_print_v4_0_1_0_Schwaemme_121127_verantw_syn.xml", |
|
136 |
// "rldb_print_v4_0_1_0_Schwebfliegen_111103_KorrAS_120413_DF_syn.xml", |
|
137 |
// "rldb_print_v4_0_1_0_Seepocken_121128_verantw_syn.xml", |
|
138 |
// "rldb_print_v4_0_1_0_Seescheiden_121128_verantw_syn.xml", |
|
139 |
// "rldb_print_v4_0_1_0_Spinner_Oktober2011_eingearbKorr_120124_Korruebern_MB_02-05-2012_KorrV_syn.xml", |
|
140 |
// "rldb_print_v4_0_1_0_Stachelhaeuter_121128_verantw_syn.xml", |
|
141 |
// "rldb_print_v4_0_1_0_Tagfalter_06-06-2012_KorrV_syn.xml", |
|
142 |
// "rldb_print_v4_0_1_0_Thysanoptera_120413_DF_korrV_Verantw.xml", |
|
143 |
// "rldb_print_v4_0_1_0_Vielborster_130206_verantw_syn.xml", |
|
144 |
// "rldb_print_v4_0_1_0_Wenigborster_121128_verantw_syn.xml", |
|
145 |
// "rldb_print_v4_0_1_0_Zehnfusskrebse_130104_verantw_syn.xml" |
|
146 |
// |
|
147 |
|
|
148 |
//old list |
|
149 |
// "rldb_print_v4_0_1_0_Amphibien.xml", |
|
150 |
// "rldb_print_v4_0_1_0_Brutvoegel.xml", |
|
151 |
// "rldb_print_v4_0_1_0_Fische.xml", |
|
152 |
// "rldb_print_v4_0_1_0_Reptilien_1.xml" |
|
153 |
|
|
154 |
//two lists in one |
|
155 |
// "RoteListe_v4_0_6_0_BFN_Saeuger_korr.xml" |
|
156 |
); |
|
157 |
for(String fileName:fileNames){ |
|
158 |
BfnXmlTestActivator bfnXmlTestActivator = new BfnXmlTestActivator(fileName); |
|
159 |
bfnXmlTestActivator.doImport(); |
|
160 |
// pauseProg(); |
|
161 |
} |
|
162 |
|
|
163 |
//first run |
|
164 |
//create DB,Metadata |
|
165 |
// String fileName = "rldb_print_v4_0_1_0_Ameisen_110609_rev120113_syn.xml"; |
|
166 |
// BfnXmlTestActivator bfnXmlTestActivator = new BfnXmlTestActivator(fileName); |
|
167 |
// bfnXmlTestActivator.doImport(); |
|
168 |
} |
|
169 |
|
|
170 |
public static void pauseProg(){ |
|
171 |
System.out.println("Press enter to continue..."); |
|
172 |
Scanner keyboard = new Scanner(System.in); |
|
173 |
keyboard.nextLine(); |
|
174 |
} |
|
175 |
} |
|
176 |
|
|
1 |
/** |
|
2 |
* Copyright (C) 2007 EDIT |
|
3 |
* European Distributed Institute of Taxonomy |
|
4 |
* http://www.e-taxonomy.eu |
|
5 |
* |
|
6 |
* The contents of this file are subject to the Mozilla Public License Version 1.1 |
|
7 |
* See LICENSE.TXT at the top of this package for the full license terms. |
|
8 |
*/ |
|
9 |
|
|
10 |
package eu.etaxonomy.cdm.app.redlist; |
|
11 |
|
|
12 |
import java.net.URI; |
|
13 |
import java.util.Arrays; |
|
14 |
import java.util.List; |
|
15 |
import java.util.Scanner; |
|
16 |
|
|
17 |
import org.apache.log4j.Logger; |
|
18 |
|
|
19 |
import eu.etaxonomy.cdm.app.common.CdmDestinations; |
|
20 |
import eu.etaxonomy.cdm.database.DbSchemaValidation; |
|
21 |
import eu.etaxonomy.cdm.database.ICdmDataSource; |
|
22 |
import eu.etaxonomy.cdm.io.common.CdmDefaultImport; |
|
23 |
import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK; |
|
24 |
import eu.etaxonomy.cdm.io.redlist.bfnXml.BfnXmlImportConfigurator; |
|
25 |
import eu.etaxonomy.cdm.model.name.NomenclaturalCode; |
|
26 |
|
|
27 |
/** |
|
28 |
* @author a.oppermann |
|
29 |
* @created 16.07.2013 |
|
30 |
*/ |
|
31 |
public class BfnXmlTestActivator { |
|
32 |
|
|
33 |
private static final Logger logger = Logger.getLogger(BfnXmlTestActivator.class); |
|
34 |
|
|
35 |
//database validation status (create, update, validate ...) |
|
36 |
static DbSchemaValidation schemaValidation = DbSchemaValidation.VALIDATE; |
|
37 |
// static final ICdmDataSource cdmDestination = CdmDestinations.cdm_redlist_plant_localhost(); |
|
38 |
// static final ICdmDataSource cdmDestination = CdmDestinations.localH2(); |
|
39 |
static final ICdmDataSource cdmDestination = CdmDestinations.cdm_redlist_animalia_localhost(); |
|
40 |
// static final ICdmDataSource cdmDestination = CdmDestinations.cdm_redlist_animalia_production(); |
|
41 |
|
|
42 |
|
|
43 |
// private static final String strSource = "/eu/etaxonomy/cdm/io/bfnXml/"; |
|
44 |
private static final String sourceUriBase = "file:////BGBM-PESIHPC/RoteListen/"; |
|
45 |
|
|
46 |
//nom Code |
|
47 |
private static final NomenclaturalCode nomenclaturalCode = NomenclaturalCode.ICZN; |
|
48 |
|
|
49 |
//check - import |
|
50 |
static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK; |
|
51 |
|
|
52 |
|
|
53 |
//authors |
|
54 |
static final boolean doMetaData = true; |
|
55 |
//names |
|
56 |
static final boolean doTaxonNames = true; |
|
57 |
//feature |
|
58 |
static final boolean doFeature = true; |
|
59 |
//feature |
|
60 |
static final boolean doAdditionalTerms = true; |
|
61 |
|
|
62 |
private final String filename; |
|
63 |
|
|
64 |
public BfnXmlTestActivator(String fileName){ |
|
65 |
filename = fileName; |
|
66 |
} |
|
67 |
|
|
68 |
private void doImport(){ |
|
69 |
System.out.println("Start import from " + filename + " to "+ cdmDestination.getDatabase() + " ..."); |
|
70 |
|
|
71 |
//make Source |
|
72 |
URI source; |
|
73 |
try { |
|
74 |
source = URI.create(sourceUriBase + filename); |
|
75 |
// source = this.getClass().getResource(strSource + filename).toURI(); |
|
76 |
ICdmDataSource destination = cdmDestination; |
|
77 |
|
|
78 |
BfnXmlImportConfigurator bfnImportConfigurator = BfnXmlImportConfigurator.NewInstance(source, destination); |
|
79 |
|
|
80 |
//if xmllist has two lists |
|
81 |
bfnImportConfigurator.setHasSecondList(false); |
|
82 |
bfnImportConfigurator.setNomenclaturalCode(nomenclaturalCode); |
|
83 |
bfnImportConfigurator.setDoMetaData(doMetaData); |
|
84 |
bfnImportConfigurator.setDoTaxonNames(doTaxonNames); |
|
85 |
|
|
86 |
bfnImportConfigurator.setCheck(check); |
|
87 |
bfnImportConfigurator.setDbSchemaValidation(schemaValidation); |
|
88 |
|
|
89 |
//TODO only quickfix see also MetaData import |
|
90 |
String classificationName = filename.replace("rldb_print_v4_0_1_0_", "").split("_")[0]; |
|
91 |
bfnImportConfigurator.setClassificationName(classificationName); |
|
92 |
|
|
93 |
// invoke import |
|
94 |
CdmDefaultImport<BfnXmlImportConfigurator> bfnImport = new CdmDefaultImport<BfnXmlImportConfigurator>(); |
|
95 |
bfnImport.invoke(bfnImportConfigurator); |
|
96 |
|
|
97 |
logger.warn("End"); |
|
98 |
System.out.println("End import from BfnXML ("+ source.toString() + ")..."); |
|
99 |
} catch (Exception e) { |
|
100 |
e.printStackTrace(); |
|
101 |
} |
|
102 |
|
|
103 |
} |
|
104 |
|
|
105 |
/** |
|
106 |
* @param args |
|
107 |
*/ |
|
108 |
public static void main(String[] args) { |
|
109 |
|
|
110 |
List<String> fileNames = Arrays.asList( |
|
111 |
// Plants |
|
112 |
// "rldb_print_v4_0_1_0_Flechten_korr_verantw_syn.xml" |
|
113 |
// "rldb_print_v4_0_1_0_Lichenicole_verantw_syn.xml", |
|
114 |
// "rldb_print_v4_0_1_0_Makroalgen_150121_syn.xml", |
|
115 |
// "rldb_print_v4_0_1_0_Myxo_110708_korr_syn_neu.xml", |
|
116 |
// "rldb_print_v4_0_1_0_Saprophyten_verantw.xml" |
|
117 |
// |
|
118 |
// Animals |
|
119 |
// "rldb_print_v4_0_1_0_Ameisen_110609_rev120113_syn.xml" |
|
120 |
// |
|
121 |
// "rldb_print_v4_0_1_0_artenarmeWeichtiergruppen_121127_verantw_syn.xml", |
|
122 |
// "rldb_print_v4_0_1_0_Asilidae_GMH_Wolff_110314_HGxls_120413_DF_korrV_Verantw_syn.xml", |
|
123 |
// "rldb_print_v4_0_1_0_Asseln_121128_verantw_syn.xml", |
|
124 |
// "rldb_print_v4_0_1_0_Asselspinnen_120907_verantw_syn.xml", |
|
125 |
// "rldb_print_v4_0_1_0_Bienen_PWKorr_HG_120413_DF_120612_syn.xml", |
|
126 |
// "rldb_print_v4_0_1_0_Binnenmollusken_0alle_120413_DF_syn.xml", |
|
127 |
//// "rldb_print_v4_0_1_0_Blattoptera_140413_DF_syn.xml", |
|
128 |
// "rldb_print_v4_0_1_0_Empidoidea_120413_DF.xml", |
|
129 |
// "rldb_print_v4_0_1_0_Eulen_Korruebern_23-05-2012_KorrV_syn.xml", |
|
130 |
// |
|
131 |
//// , "rldb_print_v4_0_1_0_Eulenspinner_Spanner_13-06-2012_KorrV_syn.xml", |
|
132 |
// |
|
133 |
// "rldb_print_v4_0_1_0_Flohkrebse_121128_verantw_syn.xml", |
|
134 |
// "rldb_print_v4_0_1_0_Heuschrecken_syn.xml", |
|
135 |
// "rldb_print_v4_0_1_0_Igelwuermer_120907_verantw.xml", |
|
136 |
// "rldb_print_v4_0_1_0_Kumazeen_120709_verantw_syn.xml", |
|
137 |
// "rldb_print_v4_0_1_0_Meeresfische_syn.xml", |
|
138 |
// "rldb_print_v4_0_1_0_Moostierchen_121128_verantw_syn.xml", |
|
139 |
// "rldb_print_v4_0_1_0_Muscheln_121128_verantw_syn.xml", |
|
140 |
// "rldb_print_v4_0_1_0_Nesseltiere_130104_verantw_syn.xml", |
|
141 |
// "rldb_print_v4_0_1_0_Ohrwuermer_DF_syn.xml", |
|
142 |
// "rldb_print_v4_0_1_0_Pflanzenwespen_280711_Autor_110815_HG2_120413_DF_syn.xml", |
|
143 |
// "rldb_print_v4_0_1_0_Pyraloidea_Februar_2012_Korruebern_MB_24-04-2012_syn.xml", |
|
144 |
// "rldb_print_v4_0_1_0_Schaedellose_120907_verantw_syn.xml", |
|
145 |
// "rldb_print_v4_0_1_0_Schnecken_130206_verantw_syn.xml", |
|
146 |
// "rldb_print_v4_0_1_0_Schwaemme_121127_verantw_syn.xml", |
|
147 |
// "rldb_print_v4_0_1_0_Schwebfliegen_111103_KorrAS_120413_DF_syn.xml", |
|
148 |
// "rldb_print_v4_0_1_0_Seepocken_121128_verantw_syn.xml", |
|
149 |
// "rldb_print_v4_0_1_0_Seescheiden_121128_verantw_syn.xml", |
|
150 |
// "rldb_print_v4_0_1_0_Spinner_Oktober2011_eingearbKorr_120124_Korruebern_MB_02-05-2012_KorrV_syn.xml", |
|
151 |
// "rldb_print_v4_0_1_0_Stachelhaeuter_121128_verantw_syn.xml", |
|
152 |
// "rldb_print_v4_0_1_0_Tagfalter_06-06-2012_KorrV_syn.xml", |
|
153 |
// "rldb_print_v4_0_1_0_Thysanoptera_120413_DF_korrV_Verantw.xml", |
|
154 |
// "rldb_print_v4_0_1_0_Vielborster_130206_verantw_syn.xml", |
|
155 |
// "rldb_print_v4_0_1_0_Wenigborster_121128_verantw_syn.xml", |
|
156 |
// "rldb_print_v4_0_1_0_Zehnfusskrebse_130104_verantw_syn.xml" |
|
157 |
// |
|
158 |
|
|
159 |
//old list |
|
160 |
// "rldb_print_v4_0_1_0_Amphibien.xml", |
|
161 |
// "rldb_print_v4_0_1_0_Brutvoegel.xml", |
|
162 |
// "rldb_print_v4_0_1_0_Fische.xml", |
|
163 |
// "rldb_print_v4_0_1_0_Reptilien_1.xml" |
|
164 |
|
|
165 |
//two lists in one |
|
166 |
"RoteListe_v4_0_6_0_BFN_Saeuger_korr.xml" |
|
167 |
); |
|
168 |
for(String fileName : fileNames){ |
|
169 |
BfnXmlTestActivator bfnXmlTestActivator = new BfnXmlTestActivator(fileName); |
|
170 |
bfnXmlTestActivator.doImport(); |
|
171 |
// pauseProg(); |
|
172 |
} |
|
173 |
|
|
174 |
//first run |
|
175 |
//create DB,Metadata |
|
176 |
// String fileName = "rldb_print_v4_0_1_0_Ameisen_110609_rev120113_syn.xml"; |
|
177 |
// BfnXmlTestActivator bfnXmlTestActivator = new BfnXmlTestActivator(fileName); |
|
178 |
// bfnXmlTestActivator.doImport(); |
|
179 |
} |
|
180 |
|
|
181 |
@SuppressWarnings("resource") |
|
182 |
public static void pauseProg(){ |
|
183 |
System.out.println("Press enter to continue..."); |
|
184 |
Scanner keyboard = new Scanner(System.in); |
|
185 |
keyboard.nextLine(); |
|
186 |
} |
|
187 |
} |
|
188 |
|
Also available in: Unified diff
Improve BfnXmlImportActivator