Revision 4f913449
Added by Andreas Müller about 6 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/io/cuba/CubaExcelImport.java | ||
|---|---|---|
| 64 | 64 |
import eu.etaxonomy.cdm.model.taxon.SynonymType; |
| 65 | 65 |
import eu.etaxonomy.cdm.model.taxon.Taxon; |
| 66 | 66 |
import eu.etaxonomy.cdm.model.taxon.TaxonNode; |
| 67 |
import eu.etaxonomy.cdm.model.taxon.TaxonRelationship; |
|
| 67 | 68 |
import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType; |
| 68 | 69 |
import eu.etaxonomy.cdm.strategy.homotypicgroup.BasionymRelationCreator; |
| 69 | 70 |
import eu.etaxonomy.cdm.strategy.parser.INonViralNameParser; |
| ... | ... | |
| 405 | 406 |
Taxon misappliedNameTaxon = Taxon.NewInstance(name, null); |
| 406 | 407 |
misappliedNameTaxon.addSource(makeOriginalSource(state)); |
| 407 | 408 |
misappliedNameTaxon.setDoubtful(doubtful); |
| 409 |
boolean isProParteMisapplied = false; |
|
| 408 | 410 |
if (secondPart.startsWith("sensu")){
|
| 409 | 411 |
secondPart = secondPart.substring(5).trim(); |
| 412 |
if (secondPart.endsWith(" p.p.")){
|
|
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secondPart = secondPart.replaceAll(" p.p.$", "");
|
|
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isProParteMisapplied = true; |
|
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} |
|
| 410 | 416 |
Reference sensu; |
| 411 | 417 |
if (isConcreteReference(secondPart)) {
|
| 412 | 418 |
List<Reference> sensuRefs = getConcreteReferences(secondPart, state); |
| ... | ... | |
| 431 | 437 |
} |
| 432 | 438 |
//TODO |
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Reference relRef = null; |
| 434 |
state.getCurrentTaxon().addMisappliedName(misappliedNameTaxon, relRef, null); |
|
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TaxonRelationship rel = state.getCurrentTaxon().addMisappliedName(misappliedNameTaxon, relRef, null); |
|
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if (isProParteMisapplied){
|
|
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rel.setType(TaxonRelationshipType.PRO_PARTE_MISAPPLIED_NAME_FOR()); |
|
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} |
|
| 435 | 444 |
}else if (nomInvalMatcher.matches()){
|
| 436 | 445 |
String firstPart = nomInvalMatcher.group(1); |
| 437 | 446 |
String afterInval = nomInvalMatcher.group(2); |
| ... | ... | |
| 500 | 509 |
boolean result = false; |
| 501 | 510 |
String[] splits = secondPart.split(",");
|
| 502 | 511 |
for (String split : splits){
|
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split = split.trim(); |
|
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split = split.trim().replaceAll(" p.p.$", "");
|
|
| 504 | 513 |
result = split.equals("Griseb. 2") || split.equals("Sauv. 3")
|
| 505 | 514 |
|| split.equals("Grisebach 5") || split.equals("Griseb. 78") ;
|
| 506 | 515 |
if (result == false){
|
| ... | ... | |
| 514 | 523 |
List<Reference> result = new ArrayList<>(); |
| 515 | 524 |
String[] splits = secondPart.split(",");
|
| 516 | 525 |
for (String split : splits){
|
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split = split.trim(); |
|
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split = split.trim().replaceAll(" p.p.$", "");
|
|
| 518 | 527 |
if (split.equals("Griseb. 2")){
|
| 519 | 528 |
result.add(getSourceByNumber("2", state));
|
| 520 | 529 |
}else if (split.equals("Sauv. 3")){
|
Also available in: Unified diff
ref #7216 implement pro parte misapplied names for Cuba import