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/**
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* Copyright (C) 2017 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.plantglossary;
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import java.net.URI;
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import java.net.URISyntaxException;
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import java.util.ArrayList;
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import java.util.HashSet;
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import java.util.List;
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import java.util.Set;
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import eu.etaxonomy.cdm.api.service.ITermService;
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import eu.etaxonomy.cdm.api.service.IVocabularyService;
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import eu.etaxonomy.cdm.io.csv.in.CsvImportState;
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import eu.etaxonomy.cdm.model.agent.Institution;
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import eu.etaxonomy.cdm.model.agent.Person;
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import eu.etaxonomy.cdm.model.agent.Team;
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import eu.etaxonomy.cdm.model.common.IdentifiableSource;
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import eu.etaxonomy.cdm.model.common.OriginalSourceType;
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import eu.etaxonomy.cdm.model.common.TermType;
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import eu.etaxonomy.cdm.model.common.TermVocabulary;
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import eu.etaxonomy.cdm.model.common.VerbatimTimePeriod;
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import eu.etaxonomy.cdm.model.description.State;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
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/**
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*
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* @author pplitzner
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* @since Dec 7, 2018
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*
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*/
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public class PlantGlossaryCsvImportState extends CsvImportState<PlantGlossaryCsvImportConfigurator> {
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private TermVocabulary modifierVoc;
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private List<TermVocabulary> existingVocabularies = new ArrayList<>();
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private List<State> existingTerms = new ArrayList<>();
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private Set<TermVocabulary> vocabularies = new HashSet<>();
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private final Reference citation;
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protected PlantGlossaryCsvImportState(PlantGlossaryCsvImportConfigurator config) {
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super(config);
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citation = ReferenceFactory.newGeneric();
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citation.setTitle("FloraTerms");
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Team team = Team.NewInstance();
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team.addTeamMember(Person.NewInstance(null, "Cui", null, "Hong"));
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team.addTeamMember(Person.NewInstance(null, "Cole", null, "Heather"));
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team.addTeamMember(Person.NewInstance(null, "Endara", null, "Lorena"));
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team.addTeamMember(Person.NewInstance(null, "Macklin", null, "James"));
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team.addTeamMember(Person.NewInstance(null, "Sachs", null, "Joel"));
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citation.setAuthorship(team);
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VerbatimTimePeriod datePublished = VerbatimTimePeriod.NewVerbatimInstance();
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datePublished.setStartYear(2014);
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datePublished.setStartMonth(6);
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datePublished.setStartDay(13);
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citation.setDatePublished(datePublished);
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Institution institution = Institution.NewNamedInstance("OTO System");
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institution.addUrl(URI.create("http://biosemantics.arizona.edu/OTO/"));
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citation.setInstitution(institution);
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URI uri;
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try {
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uri = new URI("https://terms.tdwg.org/wiki/FloraTerms");
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citation.setUri(uri);
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} catch (URISyntaxException e) {
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}
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modifierVoc = TermVocabulary.NewInstance(TermType.Modifier);
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modifierVoc.setLabel("Plant Glossary Modifiers");
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modifierVoc.addSource(IdentifiableSource.NewInstance(OriginalSourceType.Import, citation.getTitle(), null, citation, null));
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}
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@Override
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public void resetSession(){
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super.resetSession();
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}
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public TermVocabulary getModifierVoc() {
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return modifierVoc;
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}
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void addVocabulary(TermVocabulary vocabulary) {
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vocabularies.add(vocabulary);
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}
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TermVocabulary checkVocabularies(String vocName, IVocabularyService vocabularyService){
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if(existingVocabularies.isEmpty()){
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existingVocabularies = vocabularyService.list(TermVocabulary.class, null, null, null, null);
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}
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for (TermVocabulary termVocabulary : vocabularies) {
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if(termVocabulary.getLabel().equals(vocName)){
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return termVocabulary;
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}
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}
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return null;
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}
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public boolean isTermPresent(String termName, ITermService termService) {
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if(existingTerms.isEmpty()){
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existingTerms = termService.list(State.class, null, null, null, null);
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}
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return existingTerms.stream().map(term->term.getLabel()).anyMatch(label->label.equals(termName));
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}
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Reference getCitation() {
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return citation;
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}
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}
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