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// $Id$
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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.berlinModel.in.validation;
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import java.sql.ResultSet;
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import java.sql.SQLException;
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import org.apache.commons.lang.StringUtils;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator;
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import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportState;
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import eu.etaxonomy.cdm.io.common.IOValidator;
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import eu.etaxonomy.cdm.io.common.Source;
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/**
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* @author a.mueller
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* @created 17.02.2010
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*/
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public class BerlinModelFactsImportValidator implements IOValidator<BerlinModelImportState> {
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private static final Logger logger = Logger.getLogger(BerlinModelFactsImportValidator.class);
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@Override
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public boolean validate(BerlinModelImportState state) {
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boolean result = true;
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result &= checkDesignationRefsExist(state);
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result &= checkFactsForSynonyms(state);
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return result;
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}
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private boolean checkDesignationRefsExist(BerlinModelImportState state){
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try {
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boolean result = true;
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BerlinModelImportConfigurator config = state.getConfig();
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Source source = state.getConfig().getSource();
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String strQuery = "SELECT Count(*) as n " +
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" FROM Fact " +
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" WHERE (NOT (PTDesignationRefFk IS NULL) ) OR " +
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" (NOT (PTDesignationRefDetailFk IS NULL) )";
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if (StringUtils.isNotBlank(config.getFactFilter())){
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strQuery += String.format(" AND (%s) ", config.getFactFilter()) ;
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}
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ResultSet rs = source.getResultSet(strQuery);
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rs.next();
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int count = rs.getInt("n");
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if (count > 0){
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System.out.println("========================================================");
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logger.warn("There are "+count+" Facts with not empty designation references. Designation references are not imported.");
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System.out.println("========================================================");
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}
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return result;
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} catch (SQLException e) {
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e.printStackTrace();
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return false;
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}
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}
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private boolean checkFactsForSynonyms(BerlinModelImportState state){
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try {
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boolean result = true;
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BerlinModelImportConfigurator config = state.getConfig();
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Source source = config.getSource();
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String strQuery = "SELECT f.factId, f.fact, fc.factCategoryId, fc.FactCategory, pt.StatusFk, n.FullNameCache, s.Status, pt.PTRefFk, r.RefCache " +
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" FROM Fact f " +
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" INNER JOIN FactCategory fc ON fc.FactCategoryId = f.factCategoryFk " +
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" INNER JOIN PTaxon pt ON f.PTNameFk = pt.PTNameFk AND f.PTRefFk = pt.PTRefFk" +
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" INNER JOIN Name n ON pt.PTNameFk = n.NameId " +
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" INNER JOIN Status s ON pt.StatusFk = s.StatusId " +
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" LEFT OUTER JOIN Reference r ON pt.PTRefFk = r.RefId " +
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" WHERE (pt.StatusFk NOT IN ( 1, 5)) ";
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if (StringUtils.isNotBlank(config.getFactFilter())){
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strQuery += String.format(" AND (%s) ", config.getFactFilter()) ;
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}
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ResultSet resulSet = source.getResultSet(strQuery);
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boolean firstRow = true;
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while (resulSet.next()){
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if (firstRow){
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System.out.println("========================================================");
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System.out.println("There are facts for a taxon that is not accepted!");
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System.out.println("========================================================");
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}
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int factId = resulSet.getInt("FactId");
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String fact = resulSet.getString("Fact");
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String factCategory = resulSet.getString("FactCategory");
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int factCategoryId = resulSet.getInt("FactCategoryId");
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String status = resulSet.getString("Status");
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String fullNameCache = resulSet.getString("FullNameCache");
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String ptRefFk = resulSet.getString("PTRefFk");
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String ptRef = resulSet.getString("RefCache");
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System.out.println("FactId: " + factId + "\n Fact: " + fact +
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"\n FactCategory: " + factCategory + "\n FactCategoryId: " + factCategoryId +
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"\n Status: " + status +
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"\n FullNameCache: " + fullNameCache + "\n ptRefFk: " + ptRefFk +
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"\n sec: " + ptRef );
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result = firstRow = false;
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}
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return result;
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} catch (SQLException e) {
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e.printStackTrace();
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return false;
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}
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}
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}
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