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Revision 4a31998d

Added by Patrick Plitzner almost 8 years ago

Export taxNr

View differences:

app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/bfnXml/BfnXmlConstants.java
170 170 
    //redList feature vocabulary
171 171 
    public static final UUID vocRLFeatures =  UUID.fromString("74091f30-faa0-487b-bd7e-c82eed05d3c9");
172 172
173 
    public static final UUID TAX_NR_IDENTIFIER =  UUID.fromString("7d12de50-0db7-47b3-bb8e-703ad1d54fbc");
173 
    public static final UUID UUID_TAX_NR_IDENTIFIER_TYPE =  UUID.fromString("7d12de50-0db7-47b3-bb8e-703ad1d54fbc");
174 174 

  		




  175
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    //redList state Vocabularies


  		




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    public static final UUID vocStateRLKat =  UUID.fromString("66bbb391-af8a-423b-9506-a235b61af922");


  		












  

    
      app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/bfnXml/in/BfnXmlImportTaxonName.java
    
  





  420
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					String microRefStr = microRef == null ? null : microRef.getTitle();


  		




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					taxon.addImportSource(uniqueID, namespace, state.getCompleteSourceRef(), microRefStr);


  		




  422
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  423
  
  
    
					taxon.addIdentifier(taxonId, getIdentiferType(state, BfnXmlConstants.TAX_NR_IDENTIFIER, "taxNr", "TaxNr attribute of Bfn Xml file", "taxNr", null));


  		




  
  423
  
    
					taxon.addIdentifier(taxonId, getIdentiferType(state, BfnXmlConstants.UUID_TAX_NR_IDENTIFIER_TYPE, "taxNr", "TaxNr attribute of Bfn Xml file", "taxNr", null));


  		




  424
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				} catch (UnknownCdmTypeException e) {


  		




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					success.setValue(false);


  		




  426
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				}


  		












  

    
      app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/bfnXml/out/BfnXmlExportState.java
    
  





  10
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  11
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package eu.etaxonomy.cdm.io.redlist.bfnXml.out;


  		




  12
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import java.util.HashMap;


  		




  
  14
  
    
import java.util.Map;


  		




  
  15
  
    
import java.util.UUID;


  		




  
  16
  
    

  		




  13
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import org.apache.log4j.Logger;


  		




  14
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  15
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import eu.etaxonomy.cdm.io.common.XmlExportState;


  		




  ......




  25
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	@SuppressWarnings("unused")


  		




  26
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	private static final Logger logger = Logger.getLogger(BfnXmlExportState.class);


  		




  27
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  32
  
    
	private Map<String, UUID> taxNrMap = new HashMap<String, UUID>();


  		




  
  33
  
    

  		




  28
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	public BfnXmlExportState(BfnXmlExportConfigurator config) {


  		




  29
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		super(config);


  		




  30
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	}


  		




  31
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  38
  
    
    public Map<String, UUID> getTaxNrMap() {


  		




  
  39
  
    
        return taxNrMap;


  		




  
  40
  
    
    }


  		




  
  41
  
    

  		




  32
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}


  		












  

    
      app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/bfnXml/out/BfnXmlTaxonNameExport.java
    
  





  21
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import eu.etaxonomy.cdm.hibernate.HibernateProxyHelper;


  		




  22
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import eu.etaxonomy.cdm.io.redlist.bfnXml.BfnXmlConstants;


  		




  23
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import eu.etaxonomy.cdm.io.redlist.bfnXml.in.BfnXmlTransformer;


  		




  
  24
  
    
import eu.etaxonomy.cdm.model.common.DefinedTerm;


  		




  24
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import eu.etaxonomy.cdm.model.common.IdentifiableSource;


  		




  25
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import eu.etaxonomy.cdm.model.common.Language;


  		




  26
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import eu.etaxonomy.cdm.model.common.OriginalSourceType;


  		




  ......




  76
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            exportFeatures(roteListeDaten);


  		




  78
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  79
  
  
    
            exportTaxonomy(classification, roteListeDaten);


  		




  
  80
  
    
            exportTaxonomy(classification, roteListeDaten, state);


  		




  80
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  81
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        }


  		




  82
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  83
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	}


  		




  84
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  85
  
  
    
    private void exportTaxonomy(Classification classification, Element roteListeDaten) {


  		




  
  86
  
    
    private void exportTaxonomy(Classification classification, Element roteListeDaten, BfnXmlExportState state) {


  		




  86
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        Element taxonyme = new Element(BfnXmlConstants.EL_TAXONYME);


  		




  87
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        roteListeDaten.addContent(taxonyme);


  		




  88
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        List<TaxonNode> childNodes = classification.getChildNodes();


  		




  89
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        java.util.Collections.sort(childNodes, new OriginalSourceComparator());


  		




  90
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        for (TaxonNode taxonNode : childNodes) {


  		




  91
  
  
    
            exportTaxon(taxonNode.getTaxon(), taxonyme);


  		




  
  92
  
    
            exportTaxon(taxonNode.getTaxon(), taxonyme, state);


  		




  92
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        }


  		




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    }


  		




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  ......




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        }


  		




  164
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    }


  		




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  166
  
  
    
    private void exportTaxon(Taxon taxon, Element parent) {


  		




  
  167
  
    
    private void exportTaxon(Taxon taxon, Element parent, BfnXmlExportState state) {


  		




  167
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        Element taxonym = new Element(BfnXmlConstants.EL_TAXONYM);


  		




  168
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        parent.addContent(taxonym);


  		




  169
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  171
  
    
        DefinedTerm taxNrIdentifierType = HibernateProxyHelper.deproxy(getTermService().load(BfnXmlConstants.UUID_TAX_NR_IDENTIFIER_TYPE), DefinedTerm.class);


  		




  
  172
  
    
        Set<String> identifiers = taxon.getIdentifiers(taxNrIdentifierType);


  		




  
  173
  
    
        if(identifiers.size()==1){


  		




  
  174
  
    
            String taxNr = identifiers.iterator().next();


  		




  
  175
  
    
            taxonym.setAttribute(BfnXmlConstants.ATT_TAXNR, taxNr);


  		




  
  176
  
    
            state.getTaxNrMap().put(taxNr, taxon.getUuid());


  		




  
  177
  
    
        }


  		




  
  178
  
    
        else{


  		




  
  179
  
    
            logger.error("Taxon "+taxon.getTitleCache()+" has none or multiple identifiers of type 'taxNr'");


  		




  
  180
  
    
        }


  		




  
  181
  
    

  		




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        exportWissName(taxon, taxonym);


  		




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  172
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        //synonyms


  		












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