EDIT

/**

* Copyright (C) 2007 EDIT

* European Distributed Institute of Taxonomy 

* http://www.e-taxonomy.eu

* 

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.io.globis;

import java.sql.ResultSet;

import java.sql.SQLException;

import java.util.HashMap;

import java.util.HashSet;

import java.util.Map;

import java.util.Set;

import org.apache.log4j.Logger;

import org.springframework.stereotype.Component;

import eu.etaxonomy.cdm.io.common.ResultSetPartitioner;

import eu.etaxonomy.cdm.model.agent.Person;

import eu.etaxonomy.cdm.model.agent.Team;

import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase;

import eu.etaxonomy.cdm.model.common.CdmBase;

import eu.etaxonomy.cdm.model.common.Language;

import eu.etaxonomy.cdm.model.common.TimePeriod;

import eu.etaxonomy.cdm.model.description.CommonTaxonName;

import eu.etaxonomy.cdm.model.description.TaxonDescription;

import eu.etaxonomy.cdm.model.location.NamedArea;

import eu.etaxonomy.cdm.model.location.WaterbodyOrCountry;

import eu.etaxonomy.cdm.model.reference.Reference;

import eu.etaxonomy.cdm.model.reference.ReferenceFactory;

import eu.etaxonomy.cdm.model.taxon.Taxon;

import eu.etaxonomy.cdm.model.taxon.TaxonBase;

/**

 * @author a.mueller

 * @created 20.02.2010

 * @version 1.0

 */

@Component

public class GlobisCommonNameImport  extends GlobisImportBase<Taxon> {

	private static final Logger logger = Logger.getLogger(GlobisCommonNameImport.class);

	private int modCount = 10000;

	private static final String pluralString = "common names";

	private static final String dbTableName = "species_language";

	private static final Class cdmTargetClass = Taxon.class;  //not needed

	public GlobisCommonNameImport(){

		super(pluralString, dbTableName, cdmTargetClass);

	}

	//dirty but acceptable for globis environment

	private Map<Integer,Reference> refMap = new HashMap<Integer,Reference>();

	/* (non-Javadoc)

	 * @see eu.etaxonomy.cdm.io.globis.GlobisImportBase#getIdQuery()

	 */

	@Override

	protected String getIdQuery() {

		String strRecordQuery = 

			" SELECT ID " + 

			" FROM " + dbTableName; 

		return strRecordQuery;	

	}

	/* (non-Javadoc)

	 * @see eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportBase#getRecordQuery(eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator)

	 */

	@Override

	protected String getRecordQuery(GlobisImportConfigurator config) {

		String strRecordQuery = 

			" SELECT * " + 

			" FROM " + getTableName() + " sl " +

			" WHERE ( sl.ID IN (" + ID_LIST_TOKEN + ") )";

		return strRecordQuery;

	}

	/* (non-Javadoc)

	 * @see eu.etaxonomy.cdm.io.globis.GlobisImportBase#doPartition(eu.etaxonomy.cdm.io.common.ResultSetPartitioner, eu.etaxonomy.cdm.io.globis.GlobisImportState)

	 */

	@Override

	public boolean doPartition(ResultSetPartitioner partitioner, GlobisImportState state) {

		boolean success = true;

		Set<TaxonBase> objectsToSave = new HashSet<TaxonBase>();

		Map<String, Taxon> taxonMap = (Map<String, Taxon>) partitioner.getObjectMap(TAXON_NAMESPACE);

//		Map<String, DerivedUnit> ecoFactDerivedUnitMap = (Map<String, DerivedUnit>) partitioner.getObjectMap(ECO_FACT_DERIVED_UNIT_NAMESPACE);

		ResultSet rs = partitioner.getResultSet();

		try {

			int i = 0;

			//for each common name

            while (rs.next()){

        		if ((i++ % modCount) == 0 && i!= 1 ){ logger.info(pluralString + " handled: " + (i-1));}

        		Integer idTaxon = nullSafeInt(rs,"IDCurrentSpec");

        		try {

					//source ref

					Reference<?> sourceRef = state.getTransactionalSourceReference();

					//common names

					Integer id = nullSafeInt(rs,"ID");

					String isoLang = rs.getString("ISO");

					String strCommonName = rs.getString("commonname");

					Integer refID = nullSafeInt(rs,"ReferenceID");

					String strCountryCode = rs.getString("Code2");

					Taxon taxon = taxonMap.get(String.valueOf(idTaxon));

					if (taxon == null){

						logger.warn("No taxon found for taxonId " + idTaxon);

					}else if (isBlank(strCommonName)){

						logger.warn("No common name string defined for common name ID: " + id);

					}else{

						Language language = getLanguage(isoLang);

						if (language == null){

							logger.warn("No language found for common name ID: " + id);

						}

						NamedArea area = WaterbodyOrCountry.getWaterbodyOrCountryByIso3166A2(strCountryCode);

						if (area == null){

							logger.warn("No country found for common name ID: " + id);

						}

						TaxonDescription taxonDescription = getTaxonDescription(taxon, sourceRef, ! IMAGE_GALLERY,  CREATE);

						CommonTaxonName commonName = CommonTaxonName.NewInstance(strCommonName, language, area);

						taxonDescription.addElement(commonName);

						Reference<?> ref = handleReference(state, refID);

						if (ref == null && refID != null){

							logger.warn("No reference found for common name ID: " + id);

						}else{

							commonName.addSource(String.valueOf(refID), "reference", sourceRef, null);

						}

						objectsToSave.add(taxon); 

					}

				} catch (Exception e) {

					logger.warn("Exception in current_species: IDcurrentspec " + idTaxon + ". " + e.getMessage());

					e.printStackTrace();

				} 

            }

//            logger.warn("Specimen: " + countSpecimen + ", Descriptions: " + countDescriptions );

			logger.warn(pluralString + " to save: " + objectsToSave.size());

			getTaxonService().save(objectsToSave);	

			return success;

		} catch (SQLException e) {

			logger.error("SQLException:" +  e);

			return false;

		}

	}

	private Map<String,Language> languageMap = new HashMap<String,Language>();

	private Language getLanguage(String isoLang) {

		Language result = languageMap.get(isoLang);

		if (result == null){

			result = getTermService().getLanguageByIso(isoLang);

			if (result == null){

				logger.warn("No language found for iso code: " + isoLang);

			}

		}

		return result;

	}

	private Reference<?> handleReference(GlobisImportState state, Integer refId){

		Reference<?> result = refMap.get(refId);

		if (result == null){

			try {

				String sql = "SELECT * FROM references WHERE ReferenceID = " + refId;

				ResultSet rs = state.getConfig().getSource().getResultSet(sql);

				rs.next();

				String authors = rs.getString("Author(s)");

				String title = rs.getString("Title");

				String details = rs.getString("Details");

				Integer year = nullSafeInt(rs, "year");

				result = ReferenceFactory.newGeneric();

				result.setTitleCache(details);

				result.setTitle(title);

				result.setDatePublished(TimePeriod.NewInstance(year));

				TeamOrPersonBase<?> author;

				String[] authorSplit = authors.split("&");

				if (authorSplit.length > 1){

					Team team = Team.NewInstance();

					author = team;

					for (String singleAuthor : authorSplit){

						Person person = makeSingleAuthor(singleAuthor);

						team.addTeamMember(person);

					}

				}else{

					author = makeSingleAuthor(authors);

				}

				result.setAuthorTeam(author);

				refMap.put(refId,result);

				rs.close();

			} catch (SQLException e) {

				e.printStackTrace();

			}

		}

		return result;

	}

	private Person makeSingleAuthor(String authors) {

		Person result = Person.NewTitledInstance(authors);

		return result;

	}

	/* (non-Javadoc)

	 * @see eu.etaxonomy.cdm.io.berlinModel.in.IPartitionedIO#getRelatedObjectsForPartition(java.sql.ResultSet)

	 */

	public Map<Object, Map<String, ? extends CdmBase>> getRelatedObjectsForPartition(ResultSet rs) {

		String nameSpace;

		Class cdmClass;

		Set<String> idSet;

		Map<Object, Map<String, ? extends CdmBase>> result = new HashMap<Object, Map<String, ? extends CdmBase>>();

		try{

			Set<String> taxonIdSet = new HashSet<String>();

			while (rs.next()){

				handleForeignKey(rs, taxonIdSet, "IDCurrentSpec");

			}

			//taxon map

			nameSpace = TAXON_NAMESPACE;

			cdmClass = Taxon.class;

			idSet = taxonIdSet;

			Map<String, Taxon> objectMap = (Map<String, Taxon>)getCommonService().getSourcedObjectsByIdInSource(cdmClass, idSet, nameSpace);

			result.put(nameSpace, objectMap);

		} catch (SQLException e) {

			throw new RuntimeException(e);

		}

		return result;

	}

	/* (non-Javadoc)

	 * @see eu.etaxonomy.cdm.io.common.CdmIoBase#doCheck(eu.etaxonomy.cdm.io.common.IImportConfigurator)

	 */

	@Override

	protected boolean doCheck(GlobisImportState state){

//		IOValidator<GlobisImportState> validator = new GlobisCurrentSpeciesImportValidator();

		return true;

	}

	/* (non-Javadoc)

	 * @see eu.etaxonomy.cdm.io.common.CdmIoBase#isIgnore(eu.etaxonomy.cdm.io.common.IImportConfigurator)

	 */

	protected boolean isIgnore(GlobisImportState state){

		return ! state.getConfig().isDoCommonNames();

	}

}