EDIT

/**

* Copyright (C) 2017 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.io.plantglossary;

import java.io.File;

import java.net.URI;

import java.util.Map;

import org.apache.log4j.Logger;

import org.springframework.stereotype.Component;

import eu.etaxonomy.cdm.common.CdmUtils;

import eu.etaxonomy.cdm.io.csv.in.CsvImportBase;

import eu.etaxonomy.cdm.model.common.IdentifiableSource;

import eu.etaxonomy.cdm.model.common.OriginalSourceType;

import eu.etaxonomy.cdm.model.common.TermVocabulary;

import eu.etaxonomy.cdm.model.description.Feature;

/**

 *

 * @author pplitzner

 * @since Dec 7, 2018

 *

 */

@Component

public class PlantGlossaryCategoryAsPropertiesImport extends CsvImportBase<PlantGlossaryCsvImportConfigurator, PlantGlossaryCsvImportState, File>{

    private static final long serialVersionUID = -5600766240192189822L;

    private static Logger logger = Logger.getLogger(PlantGlossaryCategoryAsPropertiesImport.class);

    @Override

    protected void handleSingleLine(PlantGlossaryCsvImportState importState) {

        final String HEADER_LABEL = "rdfs:label";

        final String HEADER_DESCRIPTION = "skos:definition";

        final String HEADER_URI = "category_URI";

        final String HEADER_NOTES = "skos:notes";

        Map<String, String> currentRecord = importState.getCurrentRecord();

        String label = currentRecord.get(HEADER_LABEL);

        if(CdmUtils.isBlank(label)){

            // this line does not contain any vocabulary information

            return;

        }

        if(importState.isTermPresent(label, getTermService())) {

            return;

        }

        String description = currentRecord.get(HEADER_DESCRIPTION);

        String uri = currentRecord.get(HEADER_URI);

        Feature property = Feature.NewInstance(description, label, null);

        property.setUri(URI.create(uri));

        property.setIdInVocabulary(label);

        TermVocabulary vocabulary = importState.getPropertyVoc();

        vocabulary.addTerm(property);

        IdentifiableSource source = IdentifiableSource.NewInstance(OriginalSourceType.Import, importState.getCitation().getTitle(), null, importState.getCitation(), null);

        source.setIdInSource(label);

        property.addSource(source);

        getVocabularyService().saveOrUpdate(vocabulary);

        getTermService().saveOrUpdate(property);

    }

}