Revision 48014773
Added by Andreas Müller almost 9 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/out/BerlinModelTaxonNameExport.java | ||
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/** |
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* Copyright (C) 2007 EDIT |
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* European Distributed Institute of Taxonomy
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* European Distributed Institute of Taxonomy |
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* http://www.e-taxonomy.eu |
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*
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* |
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* The contents of this file are subject to the Mozilla Public License Version 1.1 |
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* See LICENSE.TXT at the top of this package for the full license terms. |
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*/ |
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public BerlinModelTaxonNameExport(){
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super(); |
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} |
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/* (non-Javadoc) |
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* @see eu.etaxonomy.cdm.io.common.CdmIoBase#doCheck(eu.etaxonomy.cdm.io.common.IImportConfigurator) |
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*/ |
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logger.warn("Checking for " + pluralString + " not yet fully implemented");
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List<TaxonNameBase> list = getObjectList(); |
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checkRank(list); |
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//result &= checkRank(config); |
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return result; |
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} |
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private boolean checkRank(List<TaxonNameBase> list){
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List<TaxonNameBase> errorNames = new ArrayList<TaxonNameBase>(); |
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for (TaxonNameBase<?,?> name : list){
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if (name.getRank() == null); |
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if (name.getRank() == null) {
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; |
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} |
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errorNames.add(name); |
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} |
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if (errorNames.size() >0){
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System.out.println("The following names have no Rank:\n=======================");
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for (TaxonNameBase<?,?> name : errorNames){
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System.out.println(" " + name.toString());
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System.out.println(" " + name.getUuid());
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System.out.println(" " + name.getTitleCache());
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System.out.println(" " + name.getUuid());
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System.out.println(" " + name.getTitleCache());
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} |
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return false; |
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}else{
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return true; |
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} |
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} |
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private CdmDbExportMapping<BerlinModelExportState, BerlinModelExportConfigurator, IExportTransformer> getMapping(){
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String tableName = dbTableName; |
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CdmDbExportMapping<BerlinModelExportState, BerlinModelExportConfigurator, IExportTransformer> mapping = new CdmDbExportMapping<BerlinModelExportState, BerlinModelExportConfigurator, IExportTransformer>(tableName); |
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mapping.addMapper(DbBooleanMapper.NewInstance("isBinomHybrid", "BinomHybFlag", false, false));
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mapping.addMapper(DbBooleanMapper.NewInstance("isTrinomHybrid", "TrinomHybFlag", false, false));
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mapping.addMapper(DbStringMapper.NewFacultativeInstance("cultivarName", "CultivarName"));
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mapping.addMapper(TeamOrPersonMapper.NewInstance("combinationAuthorTeam", "AuthorTeamFk"));
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mapping.addMapper(TeamOrPersonMapper.NewInstance("exCombinationAuthorTeam", "ExAuthorTeamFk"));
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mapping.addMapper(TeamOrPersonMapper.NewInstance("basionymAuthorTeam", "BasAuthorTeamFk"));
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mapping.addMapper(TeamOrPersonMapper.NewInstance("exBasionymAuthorTeam", "ExBasAuthorTeamFk"));
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mapping.addMapper(TeamOrPersonMapper.NewInstance("combinationAuthorship", "AuthorTeamFk"));
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mapping.addMapper(TeamOrPersonMapper.NewInstance("exCombinationAuthorship", "ExAuthorTeamFk"));
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mapping.addMapper(TeamOrPersonMapper.NewInstance("basionymAuthorship", "BasAuthorTeamFk"));
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mapping.addMapper(TeamOrPersonMapper.NewInstance("exBasionymAuthorship", "ExBasAuthorTeamFk"));
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mapping.addMapper(DbObjectMapper.NewInstance("nomenclaturalReference", "NomRefFk"));
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mapping.addMapper(RefDetailMapper.NewInstance("nomenclaturalMicroReference","nomenclaturalReference", "NomRefDetailFk"));
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mapping.addMapper(DbExtensionMapper.NewInstance(sourceAccExtensionType, "Source_Acc")); |
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} |
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mapping.addCollectionMapping(getNomStatusMapping()); |
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//TODO |
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//CultivarGroupName |
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//NameSourceRefFk |
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// ,[Source_ACC] |
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//publicationYear |
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//originalPublicationYear |
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//breed |
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//n.getNomenclaturalMicroReference() |
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return mapping; |
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} |
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private CollectionExportMapping getNomStatusMapping(){
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String tableName = "NomStatusRel"; |
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String collectionAttribute = "status"; |
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return mapping; |
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} |
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protected void doInvoke(BerlinModelExportState state){
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@Override |
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protected void doInvoke(BerlinModelExportState state){
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try{
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logger.info("start make "+pluralString+" ...");
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boolean success = true ; |
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doDelete(state); |
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TransactionStatus txStatus = startTransaction(true); |
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logger.info("load "+pluralString+" ...");
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List<TaxonNameBase> names = getObjectList(); |
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CdmDbExportMapping<BerlinModelExportState, BerlinModelExportConfigurator, IExportTransformer> mapping = getMapping(); |
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mapping.initialize(state); |
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logger.info("save "+pluralString+" ...");
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} |
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commitTransaction(txStatus); |
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logger.info("end make " + pluralString+ " ..." + getSuccessString(success));
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if (!success){
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state.setUnsuccessfull(); |
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} |
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return list; |
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} |
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protected boolean doDelete(BerlinModelExportState state){
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BerlinModelExportConfigurator bmeConfig = state.getConfig(); |
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String sql; |
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Source destination = bmeConfig.getDestination(); |
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//RelPTaxon |
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sql = "DELETE FROM PTaxon"; |
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destination.setQuery(sql); |
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destination.update(sql); |
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//NameHistory |
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sql = "DELETE FROM NameHistory"; |
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destination.setQuery(sql); |
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destination.update(sql); |
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return true; |
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} |
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/* (non-Javadoc) |
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* @see eu.etaxonomy.cdm.io.common.CdmIoBase#isIgnore(eu.etaxonomy.cdm.io.common.IImportConfigurator) |
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*/ |
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protected boolean isIgnore(BerlinModelExportState state){
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@Override |
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protected boolean isIgnore(BerlinModelExportState state){
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return ! state.getConfig().isDoTaxonNames(); |
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} |
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//called by MethodMapper |
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@SuppressWarnings("unused")
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private static Integer getRankFk(NonViralName<?> name){
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} |
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return result; |
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} |
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//called by MethodMapper |
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@SuppressWarnings("unused")
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private static Integer getNomStatusFk(NomenclaturalStatus status){
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return BerlinModelTransformer.nomStatus2nomStatusFk(status.getType()); |
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} |
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//called by MethodMapper |
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@SuppressWarnings("unused")
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private static String getSupraGenericName(NonViralName<?> name){
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return null; |
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} |
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} |
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//called by MethodMapper |
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@SuppressWarnings("unused")
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private static String getGenus(NonViralName<?> name){
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return null; |
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} |
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} |
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//called by MethodMapper |
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@SuppressWarnings("unused")
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private static Boolean getPreliminaryFlag(NonViralName<?> name){
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return false; |
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} |
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} |
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/* (non-Javadoc) |
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* @see eu.etaxonomy.cdm.io.berlinModel.out.BerlinModelExportBase#getStandardMethodParameter() |
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public Class<? extends CdmBase> getStandardMethodParameter() {
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return standardMethodParameter; |
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} |
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} |
Also available in: Unified diff
Rename NonViralName authorteams to authorship #4968