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/**
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* Copyright (C) 2008 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.app.jaxb;
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import java.io.File;
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import java.io.FileNotFoundException;
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import java.io.FileOutputStream;
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import java.io.OutputStreamWriter;
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import java.io.PrintWriter;
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import java.io.UnsupportedEncodingException;
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import java.net.URI;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.api.application.CdmApplicationController;
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import eu.etaxonomy.cdm.app.common.CdmDestinations;
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import eu.etaxonomy.cdm.app.util.TestDatabase;
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import eu.etaxonomy.cdm.database.DbSchemaValidation;
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import eu.etaxonomy.cdm.database.ICdmDataSource;
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import eu.etaxonomy.cdm.io.common.CdmDefaultExport;
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import eu.etaxonomy.cdm.io.jaxb.JaxbExportConfigurator;
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/**
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* @author a.babadshanjan
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* @created 25.09.2008
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*/
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public class JaxbExportActivator {
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/* SerializeFrom DB **/
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// private static final ICdmDataSource cdmSource = CdmDestinations.localH2();
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private static final ICdmDataSource cdmSource = CdmDestinations.cdm_production_flora_deutschland();
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// Export:
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private static String exportFileName = "file:/F:/data/redlist/standardliste/standardliste_jaxb.xml";
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/** NUMBER_ROWS_TO_RETRIEVE = 0 is the default case to retrieve all rows.
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* For testing purposes: If NUMBER_ROWS_TO_RETRIEVE >0 then retrieve
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* as many rows as specified for agents, references, etc.
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* Only root taxa and no synonyms and relationships are retrieved. */
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private static final int NUMBER_ROWS_TO_RETRIEVE = 0;
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private static final Logger logger = Logger.getLogger(JaxbImportActivator.class);
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private void invokeExport(ICdmDataSource sourceParam, URI uri) {
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// String server = "localhost";
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// String database = "EDITimport";
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// String username = "edit";
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// sourceParam = CdmDataSource.NewMySqlInstance(server, database, username, AccountStore.readOrStorePassword(server, database, username, null));
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JaxbExportConfigurator jaxbExportConfigurator;
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if (uri !=null && sourceParam != null){
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jaxbExportConfigurator = JaxbExportConfigurator.NewInstance(sourceParam, uri);
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}else if (sourceParam != null){
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jaxbExportConfigurator = JaxbExportConfigurator.NewInstance(sourceParam, URI.create(exportFileName));
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} else if (uri !=null ){
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jaxbExportConfigurator = JaxbExportConfigurator.NewInstance(cdmSource, uri);
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} else{
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jaxbExportConfigurator = JaxbExportConfigurator.NewInstance(cdmSource, URI.create(exportFileName));
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}
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CdmDefaultExport<JaxbExportConfigurator> jaxbExport =
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new CdmDefaultExport<JaxbExportConfigurator>();
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// invoke export
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logger.debug("Invoking Jaxb export");
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jaxbExport.invoke(jaxbExportConfigurator);
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}
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public static String chooseFile(String[] args) {
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if(args == null)
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return null;
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for (String dest: args){
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if (dest.endsWith(".xml")){
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return args[0];
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}
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}
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return null;
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}
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private CdmApplicationController initDb(ICdmDataSource db) {
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// Init source DB
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CdmApplicationController appCtrInit = TestDatabase.initDb(db, DbSchemaValidation.VALIDATE, false);
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return appCtrInit;
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}
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// Load test data to DB
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private void loadTestData(CdmApplicationController appCtrInit) {
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TestDatabase.loadTestData("", appCtrInit);
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}
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/**
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* @param args
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*/
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public static void main(String[] args) {
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JaxbExportActivator sc = new JaxbExportActivator();
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ICdmDataSource source = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmSource;
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String file = chooseFile(args);
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if (file == null){
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file = exportFileName;
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}
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URI uri = URI.create(file);
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try {
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File myFile = new File(uri);
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PrintWriter writer = new PrintWriter(new OutputStreamWriter(new FileOutputStream(myFile), "UTF8"), true);
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sc.initDb(source); //does this make sense here (it starts the appControler even if it is not needed later
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sc.invokeExport(source, uri);
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} catch (UnsupportedEncodingException e) {
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// TODO Auto-generated catch block
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e.printStackTrace();
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} catch (FileNotFoundException e) {
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// TODO Auto-generated catch block
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e.printStackTrace();
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}
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}
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}
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