Project

General

Profile

« Previous | Next » 

Revision 401fe405

Added by Andreas Müller over 13 years ago

merge cdmlib-app-3.0.2 to trunk (app-import)

View differences:

app-import/src/main/java/eu/etaxonomy/cdm/app/util/TestDatabase.java
43 43 
import eu.etaxonomy.cdm.model.name.TaxonNameBase;
44 44 
import eu.etaxonomy.cdm.model.occurrence.Specimen;
45 45 
import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
46 
import eu.etaxonomy.cdm.model.reference.ReferenceBase;
46 
import eu.etaxonomy.cdm.model.reference.Reference;
47 47 
import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
48 48 
import eu.etaxonomy.cdm.model.taxon.Synonym;
49 49 
import eu.etaxonomy.cdm.model.taxon.SynonymRelationshipType;
50 50 
import eu.etaxonomy.cdm.model.taxon.Taxon;
51 51 
import eu.etaxonomy.cdm.model.taxon.TaxonBase;
52 52 
import eu.etaxonomy.cdm.model.taxon.TaxonNode;
53 
import eu.etaxonomy.cdm.model.taxon.TaxonomicTree;
53 
import eu.etaxonomy.cdm.model.taxon.Classification;
54 54 

  		




  55
  55
  
    
/**


  		




  56
  56
  
    
 * @author a.babadshanjan


  		




  ......




  97
  97
  
    
    }


  		




  98
  98
  
    
    


  		




  99
  99
  
    
	/**


  		




  100
  
  
    
	 * This method constructs a small sample taxonomic tree to test JAXB marshaling.


  		




  
  100
  
    
	 * This method constructs a small sample classification to test JAXB marshaling.


  		




  101
  101
  
    
	 * The sample tree contains four taxa. The root taxon has two children taxa, and


  		




  102
  102
  
    
	 * there is one "free" taxon without a parent and children.


  		




  103
  103
  
    
	 */


  		




  ......




  109
  109
  
    
	    


  		




  110
  110
  
    
	    //List<TermBase> terms = new ArrayList<TermBase>();


  		




  111
  111
  
    
	    List<DefinedTermBase> terms = new ArrayList<DefinedTermBase>();


  		




  112
  
  
    
	    List<ReferenceBase> references = new ArrayList<ReferenceBase>();


  		




  
  112
  
    
	    List<Reference> references = new ArrayList<Reference>();


  		




  113
  113
  
    
	    List<TaxonNameBase> taxonomicNames = new ArrayList<TaxonNameBase>();


  		




  114
  114
  
    
	    List<TaxonBase> taxonBases = new ArrayList<TaxonBase>();


  		




  115
  115
  
    
	    


  		




  ......




  145
  145
  
    
//	    List<Synonym> synonyms = new ArrayList<Synonym>();


  		




  146
  146
  
    
	    List<AnnotatableEntity> homotypicalGroups;


  		




  147
  147
  
    

  		




  148
  
  
    
		ReferenceBase citRef, sec;


  		




  
  148
  
    
		Reference citRef, sec;


  		




  149
  149
  
    
		BotanicalName name1, name2, name21, nameRoot1, nameFree, synName11, synName12, synName2, synNameFree;


  		




  150
  150
  
    
		BotanicalName nameRoot2, nameR2_1, nameR2_2;


  		




  151
  151
  
    
		Taxon child1, child2, child21, root1T, root2T, freeT;


  		




  152
  152
  
    
		Taxon childR2_1, childR2_2;


  		




  153
  153
  
    
		TaxonNode child1Node, child2Node, child21Node, root1TNode, root2TNode, freeTNode;


  		




  154
  154
  
    
		TaxonNode childR2_1Node, childR2_2Node;


  		




  155
  
  
    
		TaxonomicTree taxTree, taxTree2;


  		




  
  155
  
    
		Classification taxTree, taxTree2;


  		




  156
  156
  
    
		Synonym syn11, syn12, syn2, synFree;


  		




  157
  157
  
    
		Rank rankSpecies, rankSubspecies, rankGenus;


  		




  158
  158
  
    

  		




  ......




  299
  299
  
    
		


  		




  300
  300
  
    
		// taxonomic children


  		




  301
  301
  
    
		


  		




  302
  
  
    
		//TODO: Adapt to taxonomic tree


  		




  303
  
  
    
		taxTree = TaxonomicTree.NewInstance("TestTree");


  		




  
  302
  
    
		//TODO: Adapt to classification


  		




  
  303
  
    
		taxTree = Classification.NewInstance("TestTree");


  		




  304
  304
  
    
		


  		




  305
  305
  
    
		root1TNode = taxTree.addChildTaxon(root1T, sec, null, null);


  		




  306
  306
  
    
		child1Node = root1TNode.addChildTaxon(child1, null, null, null);


  		




  307
  307
  
    
		child2Node = root1TNode.addChildTaxon(child2, null, null, null);


  		




  308
  308
  
    
		child21Node = child2Node.addChildTaxon(child21, null, null, null);


  		




  309
  309
  
    
		


  		




  310
  
  
    
		taxTree2 = TaxonomicTree.NewInstance("TestTree2");


  		




  
  310
  
    
		taxTree2 = Classification.NewInstance("TestTree2");


  		




  311
  311
  
    
		


  		




  312
  312
  
    
		root2TNode = taxTree2.addChildTaxon(root2T, sec, null, null);


  		




  313
  313
  
    
		root2TNode.addChildTaxon(child1, sec, "p.1010", syn11);


  		




  ......




  335
  335
  
    
		


  		




  336
  336
  
    
		DataSet dataSet = new DataSet();


  		




  337
  337
  
    
	


  		




  338
  
  
    
		logger.warn("WARNING: TestDatabase has been commented in parts. Mainly, must be adapted to taxonomic tree.");


  		




  
  338
  
    
		logger.warn("WARNING: TestDatabase has been commented in parts. Mainly, must be adapted to classification.");


  		




  339
  339
  
    
		


  		




  340
  340
  
    
		dataSet.setTerms(terms);


  		




  341
  341
  
    
		dataSet.setAgents(agents);


  		












Also available in:  Unified diff