EDIT

/**

* Copyright (C) 2007 EDIT

* European Distributed Institute of Taxonomy 

* http://www.e-taxonomy.eu

* 

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.io.algaterra;

import java.sql.ResultSet;

import java.sql.SQLException;

import java.util.HashMap;

import java.util.HashSet;

import java.util.Map;

import java.util.Set;

import org.apache.commons.lang.StringUtils;

import org.apache.log4j.Logger;

import org.springframework.stereotype.Component;

import eu.etaxonomy.cdm.api.facade.DerivedUnitFacade;

import eu.etaxonomy.cdm.api.facade.DerivedUnitFacade.DerivedUnitType;

import eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeNotSupportedException;

import eu.etaxonomy.cdm.database.update.TableNameChanger;

import eu.etaxonomy.cdm.io.algaterra.validation.AlgaTerraTypeImportValidator;

import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator;

import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportState;

import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelReferenceImport;

import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelTaxonNameImport;

import eu.etaxonomy.cdm.io.common.IOValidator;

import eu.etaxonomy.cdm.io.common.ResultSetPartitioner;

import eu.etaxonomy.cdm.model.common.CdmBase;

import eu.etaxonomy.cdm.model.media.Media;

import eu.etaxonomy.cdm.model.name.BotanicalName;

import eu.etaxonomy.cdm.model.name.Rank;

import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation;

import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignationStatus;

import eu.etaxonomy.cdm.model.name.TaxonNameBase;

import eu.etaxonomy.cdm.model.occurrence.Collection;

import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;

import eu.etaxonomy.cdm.model.occurrence.DerivedUnitBase;

import eu.etaxonomy.cdm.model.occurrence.FieldObservation;

import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;

import eu.etaxonomy.cdm.model.reference.Reference;

/**

 * @author a.mueller

 * @created 20.03.2008

 * @version 1.0

 */

@Component

public class AlgaTerraTypeImagesImport  extends AlgaTerraImageImportBase {

	private static final Logger logger = Logger.getLogger(AlgaTerraTypeImagesImport.class);

	private static int modCount = 5000;

	private static final String pluralString = "type images";

	private static final String dbTableName = "SpecimenFigure";  //??  

	public AlgaTerraTypeImagesImport(){

		super();

	}

	/* (non-Javadoc)

	 * @see eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportBase#getIdQuery()

	 */

	@Override

	protected String getIdQuery(BerlinModelImportState state) {

		String result = " SELECT SpecimenFigureId "  

				+ " FROM SpecimenFigure " 

				+ " WHERE TypeSpecimenFk is NOT NULL "

				+ " ORDER BY TypeSpecimenFk ";

		return result;

	}

	/* (non-Javadoc)

	 * @see eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportBase#getRecordQuery(eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator)

	 */

	@Override

	protected String getRecordQuery(BerlinModelImportConfigurator config) {

			String strQuery =    

			" SELECT sf.*, sf.SpecimenFigurePhrase as FigurePhrase, sf.SpecimenFigure as fileName" +

            " FROM SpecimenFigure sf  " 

     	+ 	" WHERE (sf.SpecimenFigureId IN (" + ID_LIST_TOKEN + ")  )"  

     	+ " ORDER BY TypeSpecimenFk ";

            ;

		return strQuery;

	}

	/* (non-Javadoc)

	 * @see eu.etaxonomy.cdm.io.berlinModel.in.IPartitionedIO#doPartition(eu.etaxonomy.cdm.io.berlinModel.in.ResultSetPartitioner, eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportState)

	 */

	public boolean doPartition(ResultSetPartitioner partitioner, BerlinModelImportState bmState) {

		boolean success = true;

		AlgaTerraImportState state = (AlgaTerraImportState)bmState;

		Set<SpecimenOrObservationBase> unitsToSave = new HashSet<SpecimenOrObservationBase>();

		Map<String, DerivedUnit> typeSpecimenMap = (Map<String, DerivedUnit>) partitioner.getObjectMap(AlgaTerraSpecimenImportBase.TYPE_SPECIMEN_DERIVED_UNIT_NAMESPACE);

		Map<String, Reference> biblioReference = (Map<String, Reference>) partitioner.getObjectMap(BerlinModelReferenceImport.BIBLIO_REFERENCE_NAMESPACE);

		ResultSet rs = partitioner.getResultSet();

		try {

			int i = 0;

			//for each reference

            while (rs.next()){

        		if ((i++ % modCount) == 0 && i!= 1 ){ logger.info(pluralString + " handled: " + (i-1));}

				int figureId = rs.getInt("SpecimenFigureId");

				int typeSpecimenFk = rs.getInt("typeSpecimenFk");

				//TODO etc. Created, Notes, Copyright, TermsOfUse etc.

				try {

					//source ref

					Reference<?> sourceRef = state.getTransactionalSourceReference();

					DerivedUnitBase derivedUnit = typeSpecimenMap.get(String.valueOf(typeSpecimenFk));

					if (derivedUnit == null){

						logger.warn("Could not find type specimen (" + typeSpecimenFk +") for specimen figure " +  figureId);

					}else{

						//field observation

						Media media = handleSingleImage(rs, derivedUnit, state, partitioner);

						handleTypeImageSpecificFields(rs, media, state);

						unitsToSave.add(derivedUnit); 

					}

				} catch (Exception e) {

					logger.warn("Exception in " + getTableName() + ": SpecimenFigureId " + figureId + ". " + e.getMessage());

					e.printStackTrace();

				} 

            }

//            logger.warn("Specimen: " + countSpecimen + ", Descriptions: " + countDescriptions );

			logger.warn(pluralString + " to save: " + unitsToSave.size());

			getOccurrenceService().saveOrUpdate(unitsToSave);	

			return success;

		} catch (SQLException e) {

			logger.error("SQLException:" +  e);

			return false;

		}

	}

	private void handleTypeImageSpecificFields(ResultSet rs, Media media, AlgaTerraImportState state) throws SQLException {

		//TODO

	}

	/* (non-Javadoc)

	 * @see eu.etaxonomy.cdm.io.berlinModel.in.IPartitionedIO#getRelatedObjectsForPartition(java.sql.ResultSet)

	 */

	public Map<Object, Map<String, ? extends CdmBase>> getRelatedObjectsForPartition(ResultSet rs) {

		String nameSpace;

		Class cdmClass;

		Set<String> idSet;

		Map<Object, Map<String, ? extends CdmBase>> result = new HashMap<Object, Map<String, ? extends CdmBase>>();

		try{

			Set<String> typeSpecimenIdSet = new HashSet<String>();

			while (rs.next()){

				handleForeignKey(rs, typeSpecimenIdSet, "TypeSpecimenFk");

			}

			//type specimen map

			nameSpace = AlgaTerraSpecimenImportBase.TYPE_SPECIMEN_DERIVED_UNIT_NAMESPACE;

			cdmClass = SpecimenOrObservationBase.class;

			idSet = typeSpecimenIdSet;

			Map<String, DerivedUnit> typeSpecimenMap = (Map<String, DerivedUnit>)getCommonService().getSourcedObjectsByIdInSource(cdmClass, idSet, nameSpace);

			result.put(nameSpace, typeSpecimenMap);

		} catch (SQLException e) {

			throw new RuntimeException(e);

		}

		return result;

	}

	/* (non-Javadoc)

	 * @see eu.etaxonomy.cdm.io.common.CdmIoBase#doCheck(eu.etaxonomy.cdm.io.common.IoStateBase)

	 */

	@Override

	protected boolean doCheck(BerlinModelImportState state){

		IOValidator<BerlinModelImportState> validator = new AlgaTerraTypeImportValidator();

		return validator.validate(state);

	}

	/* (non-Javadoc)

	 * @see eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportBase#getTableName()

	 */

	@Override

	protected String getTableName() {

		return dbTableName;

	}

	/* (non-Javadoc)

	 * @see eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportBase#getPluralString()

	 */

	@Override

	public String getPluralString() {

		return pluralString;

	}

	/* (non-Javadoc)

	 * @see eu.etaxonomy.cdm.io.common.CdmIoBase#isIgnore(eu.etaxonomy.cdm.io.common.IImportConfigurator)

	 */

	protected boolean isIgnore(BerlinModelImportState bmState){

		AlgaTerraImportConfigurator config = ((AlgaTerraImportState) bmState).getAlgaTerraConfigurator();

//		return !  ( config.isDoTypes() && config.isDoImages()) ;

		return false;

	}

}