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Revision 3921a51b

Added by Andreas Müller over 10 years ago

View differences:

.gitattributes
1200 1200
app-import/src/main/resources/taxonX/palm_tc_98886.xml -text
1201 1201
app-import/src/main/resources/tcs/Cichorium_tcs.xml -text
1202 1202
app-import/src/main/resources/tcs/tcsXmlTest.xml -text
1203
cdm-col/format/meta.tpl.txt -text
1203 1204
cdm-eflora/LICENSE.TXT -text
1204 1205
cdm-eflora/README.TXT -text
1205 1206
cdm-eflora/pom.xml -text
......
1234 1235
cdm-eflora/src/main/java/eu/etaxonomy/cdm/io/eflora/floraMalesiana/FloraMalesianaImportState.java -text
1235 1236
cdm-eflora/src/main/java/eu/etaxonomy/cdm/io/eflora/floraMalesiana/FloraMalesianaTaxonImport.java -text
1236 1237
cdm-eflora/src/main/java/eu/etaxonomy/cdm/io/eflora/floraMalesiana/FloraMalesianaTransformer.java -text
1237
cdmlib-col/format/meta.tpl.txt -text
1238 1238
cdmlib-pesi/LICENSE.TXT -text
1239 1239
cdmlib-pesi/README.TXT -text
1240 1240
cdmlib-pesi/pom.xml -text
cdm-col/format/meta.tpl.txt
1
<archive xmlns='http://rs.tdwg.org/dwc/text/'
2
    xmlns:xsi='http://www.w3.org/2001/XMLSchema-instance'
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    xsi:schemaLocation='http://rs.tdwg.org/dwc/text/ http://rs.tdwg.org/dwc/text/tdwg_dwc_text.xsd'>
4
   
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    <core encoding='UTF-8' fieldsEnclosedBy='[sep]' fieldsTerminatedBy='[del]' linesTerminatedBy='\n' ignoreHeaderLines='1' rowType='http://rs.tdwg.org/dwc/terms/Taxon'>    
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    <files>
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        <location>taxa.txt</location>
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    </files>
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    <id index='0' />
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    <!-- CoL taxon id -->
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    <field index="0" term="http://rs.tdwg.org/dwc/terms/taxonID"/>
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    <!-- LSID -->
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    <field index="1" term="http://purl.org/dc/terms/identifier"/>
14
    <!-- CoL source database id -->
15
    <field index="2" term="http://rs.tdwg.org/dwc/terms/datasetID"/>
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    <!-- Short name of source database plus CoL credits -->
17
    <field index="3" term="http://rs.tdwg.org/dwc/terms/datasetName"/>
18
    <!-- CoL taxon id of accepted taxon (relevant for synonyms only) -->
19
    <field index='4' term='http://rs.tdwg.org/dwc/terms/acceptedNameUsageID'/>
20
    <!-- CoL taxon id of parent taxon (relevant for valid taxa only) -->
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    <field index='5' term='http://rs.tdwg.org/dwc/terms/parentNameUsageID'/>
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    <!-- Species 2000 status -->
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    <field index='6' term='http://rs.tdwg.org/dwc/terms/taxonomicStatus'/> 
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    <!-- Taxonomic rank -->
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    <field index='7' term='http://rs.tdwg.org/dwc/terms/taxonRank'/>
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    <!-- Infraspecific marker if displayed in complete scientific name -->
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    <field index='8' term='http://rs.tdwg.org/dwc/terms/verbatimTaxonRank'/>
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    <!-- Complete scientific name, including subspecific marker where appropriate -->
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    <field index='9' term='http://rs.tdwg.org/dwc/terms/scientificName'/>
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    <!-- Top level group; listed as kingdom but may be interpreted as domain or superkingdom
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         The following eight groups are recognized: Animalia, Archaea, Bacteria, Chromista, 
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         Fungi, Plantae, Protozoa, Viruses -->
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    <field index='10' term='http://rs.tdwg.org/dwc/terms/kingdom'/>
34
    <!-- Phylum in which the taxon has been classified -->
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    <field index='11' term='http://rs.tdwg.org/dwc/terms/phylum'/>
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    <!-- Class in which the taxon has been classified -->
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    <field index='12' term='http://rs.tdwg.org/dwc/terms/class'/>
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    <!-- Order in which the taxon has been classified -->
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    <field index='13' term='http://rs.tdwg.org/dwc/terms/order'/>
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    <!-- Family in which the taxon has been classified -->
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    <field index='14' term='http://rs.tdwg.org/dwc/terms/family'/>
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    <!-- Genus in which the taxon has been classified -->
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    <field index='15' term='http://rs.tdwg.org/dwc/terms/genus'/>
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    <!-- Subgenus in which the taxon has been classified -->
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    <field index='16' term='http://rs.tdwg.org/dwc/terms/subgenus'/>
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    <!-- Specific epithet; for hybrids, the multiplication symbol is included in the epithet -->
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    <field index='17' term='http://rs.tdwg.org/dwc/terms/specificEpithet'/>
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    <!-- Infraspecific epithet -->
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    <field index='18' term='http://rs.tdwg.org/dwc/terms/infraspecificEpithet'/>
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    <!-- Authorship -->
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    <field index='19' term='http://rs.tdwg.org/dwc/terms/scientificNameAuthorship'/>
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    <!-- Acceptance status published in -->
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    <field index='20' term='http://purl.org/dc/terms/source'/>
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    <!-- Reference in which the scientific name was first published -->
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    <field index='21' term='http://rs.tdwg.org/dwc/terms/namePublishedIn'/>
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    <!-- Taxon scrutinized by -->
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    <field index='22' term='http://rs.tdwg.org/dwc/terms/nameAccordingTo'/> 
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    <!-- Scrutiny date -->
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    <field index='23' term='http://purl.org/dc/terms/modified'/>
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    <!-- Additional data for the taxon -->
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    <field index='24' term='http://purl.org/dc/terms/description'/>
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    </core>
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    <extension encoding='UTF-8' fieldsEnclosedBy='[sep]' fieldsTerminatedBy='[del]' linesTerminatedBy='\n' ignoreHeaderLines='1' rowType='http://rs.gbif.org/terms/1.0/Distribution'>
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        <files>
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            <location>distribution.txt</location>
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        </files>
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        <coreid index='0' />
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        <!-- Original id prefixed with the standard, e.g. tdwg:AGE-BA; eez:polish; fao:18, iso3166-1-alpha-2:SN
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             Is left empty in case distribution is taken from free text string -->
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        <field index='1' term='http://rs.tdwg.org/dwc/terms/locationID'/>
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        <!-- Locality as verbatim string -->
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        <field index='2' term='http://rs.tdwg.org/dwc/terms/locality'/>
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        <!-- Distribution status (currently not yet implemented, reserved for future edition) -->
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        <field index='3' term='http://rs.tdwg.org/dwc/terms/occurrenceStatus'/>
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        <!-- The process by which the taxon became established (currently not yet implemented, reserved for future edition) -->
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        <field index='4' term='http://rs.tdwg.org/dwc/terms/establishmentMeans'/>
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    </extension>
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    <extension encoding='UTF-8' fieldsEnclosedBy='[sep]' fieldsTerminatedBy='[del]' linesTerminatedBy='\n' ignoreHeaderLines='1' rowType='http://rs.gbif.org/terms/1.0/Reference'>
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        <files>
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            <location>references.txt</location>
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        </files>
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        <coreid index='0' />
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        <!-- Author(s) -->
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        <field index='1' term='http://purl.org/dc/terms/creator'/>
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        <!-- Year -->
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        <field index='2' term='http://purl.org/dc/terms/date'/>
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        <!-- Title -->
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        <field index='4' term='http://purl.org/dc/terms/title'/>
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        <!-- Published in -->
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        <field index='3' term='http://purl.org/dc/terms/description'/>
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        <!-- Uri -->
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        <field index='5' term='http://purl.org/dc/terms/identifier'/>
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        <!-- Type of reference; pertaining to taxon, synonym or vernacular name -->
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        <field index='5' term='http://purl.org/dc/terms/type'/>
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    </extension>
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    <extension encoding='UTF-8' fieldsEnclosedBy='[sep]' fieldsTerminatedBy='[del]' linesTerminatedBy='\n' ignoreHeaderLines='1' rowType='http://rs.gbif.org/terms/1.0/SpeciesProfile'>
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         <files>
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            <location>speciesprofile.txt</location>
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         </files>
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         <coreid index='0' />
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         <!-- Life zone (currently not yet implemented, reserved for future edition) 
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              These comprise: marine, terrestrial, brackish, freshwater, unknown -->
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         <field index='1' term='http://rs.tdwg.org/dwc/terms/habitat' vocabulary='http://www.catalogueoflife.org/dwc/habitats-classification-scheme'/>
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    </extension>  
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    <extension encoding='UTF-8' fieldsEnclosedBy='[sep]' fieldsTerminatedBy='[del]' linesTerminatedBy='\n' ignoreHeaderLines='1' rowType='http://rs.gbif.org/terms/1.0/VernacularName'>
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        <files>
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            <location>vernacular.txt</location>
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        </files>
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        <coreid index='0' />
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        <!-- Vernacular name -->
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        <field index='1' term='http://rs.tdwg.org/dwc/terms/vernacularName'/>
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        <!-- Language -->
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        <field index='2' term='http://purl.org/dc/terms/language'/>
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        <!-- Country in which the vernacular name is used -->
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        <field index='3' term='http://rs.tdwg.org/dwc/terms/countryCode'/>
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        <!-- Region in which the vernacular name is used -->
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        <field index='4' term='http://rs.tdwg.org/dwc/terms/locality'/>
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        <!-- Transliteration -->
123
        <field index='5' term='http://www.catalogueoflife.org/dwc/terms/transliteration'/>
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    </extension>
125

  
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</archive>
cdmlib-col/format/meta.tpl.txt
1
<archive xmlns='http://rs.tdwg.org/dwc/text/'
2
    xmlns:xsi='http://www.w3.org/2001/XMLSchema-instance'
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    xsi:schemaLocation='http://rs.tdwg.org/dwc/text/ http://rs.tdwg.org/dwc/text/tdwg_dwc_text.xsd'>
4
   
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    <core encoding='UTF-8' fieldsEnclosedBy='[sep]' fieldsTerminatedBy='[del]' linesTerminatedBy='\n' ignoreHeaderLines='1' rowType='http://rs.tdwg.org/dwc/terms/Taxon'>    
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    <files>
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        <location>taxa.txt</location>
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    </files>
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    <id index='0' />
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    <!-- CoL taxon id -->
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    <field index="0" term="http://rs.tdwg.org/dwc/terms/taxonID"/>
12
    <!-- LSID -->
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    <field index="1" term="http://purl.org/dc/terms/identifier"/>
14
    <!-- CoL source database id -->
15
    <field index="2" term="http://rs.tdwg.org/dwc/terms/datasetID"/>
16
    <!-- Short name of source database plus CoL credits -->
17
    <field index="3" term="http://rs.tdwg.org/dwc/terms/datasetName"/>
18
    <!-- CoL taxon id of accepted taxon (relevant for synonyms only) -->
19
    <field index='4' term='http://rs.tdwg.org/dwc/terms/acceptedNameUsageID'/>
20
    <!-- CoL taxon id of parent taxon (relevant for valid taxa only) -->
21
    <field index='5' term='http://rs.tdwg.org/dwc/terms/parentNameUsageID'/>
22
    <!-- Species 2000 status -->
23
    <field index='6' term='http://rs.tdwg.org/dwc/terms/taxonomicStatus'/> 
24
    <!-- Taxonomic rank -->
25
    <field index='7' term='http://rs.tdwg.org/dwc/terms/taxonRank'/>
26
    <!-- Infraspecific marker if displayed in complete scientific name -->
27
    <field index='8' term='http://rs.tdwg.org/dwc/terms/verbatimTaxonRank'/>
28
    <!-- Complete scientific name, including subspecific marker where appropriate -->
29
    <field index='9' term='http://rs.tdwg.org/dwc/terms/scientificName'/>
30
    <!-- Top level group; listed as kingdom but may be interpreted as domain or superkingdom
31
         The following eight groups are recognized: Animalia, Archaea, Bacteria, Chromista, 
32
         Fungi, Plantae, Protozoa, Viruses -->
33
    <field index='10' term='http://rs.tdwg.org/dwc/terms/kingdom'/>
34
    <!-- Phylum in which the taxon has been classified -->
35
    <field index='11' term='http://rs.tdwg.org/dwc/terms/phylum'/>
36
    <!-- Class in which the taxon has been classified -->
37
    <field index='12' term='http://rs.tdwg.org/dwc/terms/class'/>
38
    <!-- Order in which the taxon has been classified -->
39
    <field index='13' term='http://rs.tdwg.org/dwc/terms/order'/>
40
    <!-- Family in which the taxon has been classified -->
41
    <field index='14' term='http://rs.tdwg.org/dwc/terms/family'/>
42
    <!-- Genus in which the taxon has been classified -->
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    <field index='15' term='http://rs.tdwg.org/dwc/terms/genus'/>
44
    <!-- Subgenus in which the taxon has been classified -->
45
    <field index='16' term='http://rs.tdwg.org/dwc/terms/subgenus'/>
46
    <!-- Specific epithet; for hybrids, the multiplication symbol is included in the epithet -->
47
    <field index='17' term='http://rs.tdwg.org/dwc/terms/specificEpithet'/>
48
    <!-- Infraspecific epithet -->
49
    <field index='18' term='http://rs.tdwg.org/dwc/terms/infraspecificEpithet'/>
50
    <!-- Authorship -->
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    <field index='19' term='http://rs.tdwg.org/dwc/terms/scientificNameAuthorship'/>
52
    <!-- Acceptance status published in -->
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    <field index='20' term='http://purl.org/dc/terms/source'/>
54
    <!-- Reference in which the scientific name was first published -->
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    <field index='21' term='http://rs.tdwg.org/dwc/terms/namePublishedIn'/>
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    <!-- Taxon scrutinized by -->
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    <field index='22' term='http://rs.tdwg.org/dwc/terms/nameAccordingTo'/> 
58
    <!-- Scrutiny date -->
59
    <field index='23' term='http://purl.org/dc/terms/modified'/>
60
    <!-- Additional data for the taxon -->
61
    <field index='24' term='http://purl.org/dc/terms/description'/>
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    </core>
63
    
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    <extension encoding='UTF-8' fieldsEnclosedBy='[sep]' fieldsTerminatedBy='[del]' linesTerminatedBy='\n' ignoreHeaderLines='1' rowType='http://rs.gbif.org/terms/1.0/Distribution'>
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        <files>
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            <location>distribution.txt</location>
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        </files>
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        <coreid index='0' />
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        <!-- Original id prefixed with the standard, e.g. tdwg:AGE-BA; eez:polish; fao:18, iso3166-1-alpha-2:SN
70
             Is left empty in case distribution is taken from free text string -->
71
        <field index='1' term='http://rs.tdwg.org/dwc/terms/locationID'/>
72
        <!-- Locality as verbatim string -->
73
        <field index='2' term='http://rs.tdwg.org/dwc/terms/locality'/>
74
        <!-- Distribution status (currently not yet implemented, reserved for future edition) -->
75
        <field index='3' term='http://rs.tdwg.org/dwc/terms/occurrenceStatus'/>
76
        <!-- The process by which the taxon became established (currently not yet implemented, reserved for future edition) -->
77
        <field index='4' term='http://rs.tdwg.org/dwc/terms/establishmentMeans'/>
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    </extension>
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    <extension encoding='UTF-8' fieldsEnclosedBy='[sep]' fieldsTerminatedBy='[del]' linesTerminatedBy='\n' ignoreHeaderLines='1' rowType='http://rs.gbif.org/terms/1.0/Reference'>
81
        <files>
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            <location>references.txt</location>
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        </files>
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        <coreid index='0' />
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        <!-- Author(s) -->
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        <field index='1' term='http://purl.org/dc/terms/creator'/>
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        <!-- Year -->
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        <field index='2' term='http://purl.org/dc/terms/date'/>
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        <!-- Title -->
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        <field index='4' term='http://purl.org/dc/terms/title'/>
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        <!-- Published in -->
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        <field index='3' term='http://purl.org/dc/terms/description'/>
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        <!-- Uri -->
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        <field index='5' term='http://purl.org/dc/terms/identifier'/>
95
        <!-- Type of reference; pertaining to taxon, synonym or vernacular name -->
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        <field index='5' term='http://purl.org/dc/terms/type'/>
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    </extension>
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    <extension encoding='UTF-8' fieldsEnclosedBy='[sep]' fieldsTerminatedBy='[del]' linesTerminatedBy='\n' ignoreHeaderLines='1' rowType='http://rs.gbif.org/terms/1.0/SpeciesProfile'>
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         <files>
101
            <location>speciesprofile.txt</location>
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         </files>
103
         <coreid index='0' />
104
         <!-- Life zone (currently not yet implemented, reserved for future edition) 
105
              These comprise: marine, terrestrial, brackish, freshwater, unknown -->
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         <field index='1' term='http://rs.tdwg.org/dwc/terms/habitat' vocabulary='http://www.catalogueoflife.org/dwc/habitats-classification-scheme'/>
107
    </extension>  
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    <extension encoding='UTF-8' fieldsEnclosedBy='[sep]' fieldsTerminatedBy='[del]' linesTerminatedBy='\n' ignoreHeaderLines='1' rowType='http://rs.gbif.org/terms/1.0/VernacularName'>
110
        <files>
111
            <location>vernacular.txt</location>
112
        </files>
113
        <coreid index='0' />
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        <!-- Vernacular name -->
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        <field index='1' term='http://rs.tdwg.org/dwc/terms/vernacularName'/>
116
        <!-- Language -->
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        <field index='2' term='http://purl.org/dc/terms/language'/>
118
        <!-- Country in which the vernacular name is used -->
119
        <field index='3' term='http://rs.tdwg.org/dwc/terms/countryCode'/>
120
        <!-- Region in which the vernacular name is used -->
121
        <field index='4' term='http://rs.tdwg.org/dwc/terms/locality'/>
122
        <!-- Transliteration -->
123
        <field index='5' term='http://www.catalogueoflife.org/dwc/terms/transliteration'/>
124
    </extension>
125

  
126
</archive>

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