Revision 37c7b75c
Added by Andreas Müller over 2 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/app/berlinModelImport/MTMooseActivator.java | ||
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/** |
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* Copyright (C) 2007 EDIT |
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* European Distributed Institute of Taxonomy
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* European Distributed Institute of Taxonomy |
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* http://www.e-taxonomy.eu |
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*
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* |
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* The contents of this file are subject to the Mozilla Public License Version 1.1 |
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* See LICENSE.TXT at the top of this package for the full license terms. |
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*/ |
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/** |
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* TODO add the following to a wiki page: |
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* HINT: If you are about to import into a mysql data base running under windows and if you wish to dump and restore the resulting data bas under another operation systen
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* HINT: If you are about to import into a mysql data base running under windows and if you wish to dump and restore the resulting data bas under another operation systen |
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* you must set the mysql system variable lower_case_table_names = 0 in order to create data base with table compatible names. |
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*
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*
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* |
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* |
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* @author a.mueller |
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* |
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*/ |
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//database validation status (create, update, validate ...) |
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static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE_DROP; |
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static final Source berlinModelSource = BerlinModelSources.MT_MOOSE(); |
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// static final ICdmDataSource cdmDestination = CdmDestinations.localH2(); |
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// static final ICdmDataSource cdmDestination = CdmDestinations.cdm_redlist_moose_dev(); |
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// static final ICdmDataSource cdmDestination = CdmDestinations.cdm_redlist_moose_production(); |
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// static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql_moose(); |
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static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql_test(); |
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static final UUID classificationUuid = UUID.fromString("601d8a00-cffe-4509-af93-b15b543ccf8d");
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static final UUID sourceRefUuid = UUID.fromString("601d8a00-cffe-4509-af93-b15b543ccf8d");
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// static final UUID featureTreeUuid = UUID.fromString("4c5b5bbe-6fef-4607-96b2-1b0104eac19e");
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// static final Object[] featureKeyList = new Integer[]{7,201,202,203,204,205,206,207};
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static final boolean includeFlatClassifications = true;
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// static final Object[] featureKeyList = new Integer[]{7,201,202,203,204,205,206,207};
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static final boolean includeFlatClassifications = true; |
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static final String relPTaxonIdQuery = "SELECT * FROM RelPTaxon r " +
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static final String relPTaxonIdQuery = "SELECT * FROM RelPTaxon r " + |
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" WHERE NOT (r.PTRefFk1 <> r.PTRefFk2 AND r.RelQualifierFk = 1)"; |
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//check - import |
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static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK; |
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//NomenclaturalCode |
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static final NomenclaturalCode nomenclaturalCode = NomenclaturalCode.ICNAFP; |
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static final EDITOR editor = EDITOR.EDITOR_AS_EDITOR; |
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// ****************** ALL ***************************************** |
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//authors |
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static final boolean doAuthors = true; |
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//references |
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static final boolean doTaxonNames = true; |
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static final boolean doRelNames = true; |
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static final boolean doNameStatus = true; |
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static final boolean doTypes = true;
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static final boolean doTypes = true; |
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static final boolean doNameFacts = false; //no name facts exist |
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//taxa |
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static final boolean doTaxa = true; |
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static final boolean doRelTaxa = true; |
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static final boolean doCommonNames = false; //no common names exist |
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// ************************ NONE **************************************** // |
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// //authors |
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// static final boolean doAuthors = false; |
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// //references |
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// static final boolean doNameStatus = false; |
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// static final boolean doTypes = false; |
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// static final boolean doNameFacts = false; |
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//
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// |
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// //taxa |
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// static final boolean doTaxa = false; |
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// static final boolean doRelTaxa = false; |
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// static final boolean doFacts = false; |
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// static final boolean doOccurences = false; |
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// static final boolean doCommonNames = false; |
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public void invoke(String[] args){
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System.out.println("Start import from BerlinModel("+ berlinModelSource.getDatabase() + ") ...");
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logger.debug("Start");
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//make BerlinModel Source |
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Source source = berlinModelSource; |
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ICdmDataSource destination = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination; |
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BerlinModelImportConfigurator config = BerlinModelImportConfigurator.NewInstance(source, destination); |
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config.setClassificationUuid(classificationUuid); |
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// bmImportConfigurator.setSourceSecId(sourceSecId); |
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config.setNomenclaturalCode(nomenclaturalCode); |
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config.setDoNameStatus(doNameStatus); |
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config.setDoTypes(doTypes); |
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config.setDoNameFacts(doNameFacts); |
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config.setDoTaxa(doTaxa); |
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config.setDoRelTaxa(doRelTaxa); |
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config.setDoFacts(doFacts); |
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config.setDoCommonNames(doCommonNames); |
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config.setSourceRefUuid(sourceRefUuid); |
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config.setRelTaxaIdQuery(relPTaxonIdQuery); |
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config.setDbSchemaValidation(hbm2dll); |
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config.setCheck(check); |
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// invoke import |
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CdmDefaultImport<BerlinModelImportConfigurator> bmImport = new CdmDefaultImport<BerlinModelImportConfigurator>(); |
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bmImport.invoke(config); |
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// if (doFacts && (config.getCheck().equals(CHECK.CHECK_AND_IMPORT) || config.getCheck().equals(CHECK.IMPORT_WITHOUT_CHECK) ) ){
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// ICdmRepository app = bmImport.getCdmAppController(); |
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//
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// |
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// //make feature tree |
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// FeatureTree tree = TreeCreator.flatTree(featureTreeUuid, config.getFeatureMap(), featureKeyList); |
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// FeatureNode distributionNode = FeatureNode.NewInstance(Feature.DISTRIBUTION()); |
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// tree.getRoot().addChild(distributionNode, 0);
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// app.getFeatureTreeService().saveOrUpdate(tree);
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// tree.getRoot().addChild(distributionNode, 0); |
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// app.getTermTreeService().saveOrUpdate(tree);
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// } |
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System.out.println("End import from BerlinModel ("+ source.getDatabase() + ")...");
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} |
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/** |
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* @param args |
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*/ |
Also available in: Unified diff
cleanup and remove usage of feature tree service