Revision 31e57990
Added by Patrick Plitzner about 4 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/io/plantglossary/PlantGlossaryCategoryAsPropertiesImport.java | ||
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import eu.etaxonomy.cdm.common.CdmUtils; |
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import eu.etaxonomy.cdm.io.csv.in.CsvImportBase; |
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import eu.etaxonomy.cdm.model.common.IdentifiableSource; |
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import eu.etaxonomy.cdm.model.description.Feature; |
|
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import eu.etaxonomy.cdm.model.reference.OriginalSourceType; |
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import eu.etaxonomy.cdm.model.term.DefinedTerm; |
|
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import eu.etaxonomy.cdm.model.term.TermType; |
|
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import eu.etaxonomy.cdm.model.term.TermVocabulary; |
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|
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/** |
| ... | ... | |
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|
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String description = currentRecord.get(HEADER_DESCRIPTION); |
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String uri = currentRecord.get(HEADER_URI); |
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Feature property = Feature.NewInstance(description, label, null);
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|
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DefinedTerm property = DefinedTerm.NewInstance(TermType.Property, description, label, null);
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property.setUri(URI.create(uri)); |
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property.setIdInVocabulary(label); |
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|
| app-import/src/main/java/eu/etaxonomy/cdm/io/plantglossary/PlantGlossaryCategoryImport.java | ||
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import eu.etaxonomy.cdm.model.common.AnnotationType; |
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import eu.etaxonomy.cdm.model.common.IdentifiableSource; |
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import eu.etaxonomy.cdm.model.common.Language; |
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import eu.etaxonomy.cdm.model.description.State; |
|
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import eu.etaxonomy.cdm.model.reference.OriginalSourceType; |
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import eu.etaxonomy.cdm.model.term.TermType; |
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import eu.etaxonomy.cdm.model.term.TermVocabulary; |
| ... | ... | |
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return; |
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} |
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|
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TermVocabulary<?> stateVoc = TermVocabulary.NewInstance(
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TermVocabulary<State> stateVoc = TermVocabulary.NewInstance(
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|
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TermType.State, |
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currentRecord.get(HEADER_DESCRIPTION), |
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vocName, |
| app-import/src/main/java/eu/etaxonomy/cdm/io/plantglossary/PlantGlossaryCsvImportState.java | ||
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import eu.etaxonomy.cdm.model.agent.Team; |
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import eu.etaxonomy.cdm.model.common.IdentifiableSource; |
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import eu.etaxonomy.cdm.model.common.VerbatimTimePeriod; |
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import eu.etaxonomy.cdm.model.description.Feature; |
|
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import eu.etaxonomy.cdm.model.description.State; |
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import eu.etaxonomy.cdm.model.reference.OriginalSourceType; |
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import eu.etaxonomy.cdm.model.reference.Reference; |
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory; |
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import eu.etaxonomy.cdm.model.term.DefinedTerm; |
|
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import eu.etaxonomy.cdm.model.term.TermType; |
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import eu.etaxonomy.cdm.model.term.TermVocabulary; |
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|
| ... | ... | |
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*/ |
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public class PlantGlossaryCsvImportState extends CsvImportState<PlantGlossaryCsvImportConfigurator> {
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private TermVocabulary<Feature> propertyVoc;
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private TermVocabulary<DefinedTerm> propertyVoc;
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private List<TermVocabulary> existingVocabularies = new ArrayList<>(); |
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private List<State> existingTerms = new ArrayList<>(); |
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private Set<TermVocabulary> vocabularies = new HashSet<>(); |
| ... | ... | |
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} catch (URISyntaxException e) {
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} |
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propertyVoc = TermVocabulary.NewInstance(TermType.Feature, Feature.class);
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propertyVoc = TermVocabulary.NewInstance(TermType.Property, DefinedTerm.class);
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propertyVoc.setLabel("Plant Glossary Properties");
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propertyVoc.addSource(IdentifiableSource.NewInstance(OriginalSourceType.Import, citation.getTitle(), null, citation, null)); |
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} |
| ... | ... | |
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super.resetSession(); |
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} |
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|
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public TermVocabulary<Feature> getPropertyVoc() {
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public TermVocabulary<DefinedTerm> getPropertyVoc() {
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return propertyVoc; |
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} |
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|
| app-import/src/main/java/eu/etaxonomy/cdm/io/plantglossary/kew/KewPlantGlossaryActivator.java | ||
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import org.apache.log4j.Logger; |
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|
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import eu.etaxonomy.cdm.app.common.CdmDestinations; |
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import eu.etaxonomy.cdm.database.DatabaseTypeEnum; |
|
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import eu.etaxonomy.cdm.database.DbSchemaValidation; |
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import eu.etaxonomy.cdm.database.ICdmDataSource; |
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import eu.etaxonomy.cdm.io.common.CdmDefaultImport; |
| ... | ... | |
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public static void main(String[] args) {
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KewPlantGlossaryActivator activator = new KewPlantGlossaryActivator(); |
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try {
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// ICdmDataSource dataSource = CdmDestinations.makeDestination(DatabaseTypeEnum.MySQL, "127.0.0.1", "empty", 3306, "root", null);
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ICdmDataSource dataSource = CdmDestinations.cdm_additivity_ontology(); |
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ICdmDataSource dataSource = CdmDestinations.makeDestination(DatabaseTypeEnum.MySQL, "127.0.0.1", "empty", 3306, "root", null); |
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// ICdmDataSource dataSource = CdmDestinations.cdm_additivity_ontology();
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activator.doImport(dataSource); |
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} catch (IOException e) {
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e.printStackTrace(); |
| app-import/src/main/java/eu/etaxonomy/cdm/io/plantglossary/kew/KewPlantGlossaryCsvImportState.java | ||
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import eu.etaxonomy.cdm.model.agent.Institution; |
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import eu.etaxonomy.cdm.model.agent.Person; |
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import eu.etaxonomy.cdm.model.common.VerbatimTimePeriod; |
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import eu.etaxonomy.cdm.model.description.Feature; |
|
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import eu.etaxonomy.cdm.model.reference.Reference; |
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory; |
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import eu.etaxonomy.cdm.model.term.DefinedTerm; |
|
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import eu.etaxonomy.cdm.model.term.DefinedTermBase; |
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import eu.etaxonomy.cdm.model.term.TermType; |
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import eu.etaxonomy.cdm.model.term.TermVocabulary; |
| ... | ... | |
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private List<TermVocabulary> existingVocabularies = new ArrayList<>(); |
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private List<UuidAndTitleCache<DefinedTermBase>> existingTerms = new ArrayList<>(); |
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private final Reference citation; |
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private final TermVocabulary<Feature> structureVoc;
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private final TermVocabulary<DefinedTerm> structureVoc;
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|
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|
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protected KewPlantGlossaryCsvImportState(KewPlantGlossaryCsvImportConfigurator config) {
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super(config); |
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structureVoc = TermVocabulary.NewInstance(TermType.Feature);
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structureVoc = TermVocabulary.NewInstance(TermType.Structure, DefinedTerm.class);
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structureVoc.setLabel("Structures");
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|
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citation = ReferenceFactory.newBook(); |
| ... | ... | |
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return existingTerms.stream().anyMatch(term->term.getTitleCache().equals(termName)); |
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} |
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|
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TermVocabulary<Feature> getStructureVoc() {
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TermVocabulary<DefinedTerm> getStructureVoc() {
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return structureVoc; |
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} |
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|
| app-import/src/main/java/eu/etaxonomy/cdm/io/plantglossary/kew/KewPlantGlossaryImport.java | ||
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import eu.etaxonomy.cdm.common.CdmUtils; |
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import eu.etaxonomy.cdm.io.csv.in.CsvImportBase; |
| 19 | 19 |
import eu.etaxonomy.cdm.model.common.IdentifiableSource; |
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import eu.etaxonomy.cdm.model.description.Feature; |
|
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import eu.etaxonomy.cdm.model.reference.OriginalSourceType; |
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import eu.etaxonomy.cdm.model.term.DefinedTerm; |
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import eu.etaxonomy.cdm.model.term.TermType; |
|
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import eu.etaxonomy.cdm.model.term.TermVocabulary; |
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|
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/** |
| ... | ... | |
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return; |
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} |
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|
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Feature structure = Feature.NewInstance(currentRecord.get(HEADER_DEFINITION), termLabel, null);
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DefinedTerm structure = DefinedTerm.NewInstance(TermType.Structure, currentRecord.get(HEADER_DEFINITION), termLabel, null);
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structure.setIdInVocabulary(termLabel); |
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|
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TermVocabulary vocabulary = importState.getStructureVoc(); |
Also available in: Unified diff
Adapt imports to tem model changes