Revision 307c8d15
Added by Andreas Müller about 4 years ago
| cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/pesi/merging/FaunaEuErmsFindIdenticalNamesActivator.java | ||
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import eu.etaxonomy.cdm.api.application.CdmApplicationController; |
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import eu.etaxonomy.cdm.app.common.CdmDestinations; |
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import eu.etaxonomy.cdm.app.common.TestDatabase; |
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import eu.etaxonomy.cdm.database.DbSchemaValidation; |
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import eu.etaxonomy.cdm.database.ICdmDataSource; |
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import eu.etaxonomy.cdm.hibernate.HibernateProxyHelper; |
| cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/erms/ErmsImportBase.java | ||
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if ((count % recordsPerLog ) == 0 && count!= 0 ){ logger.info(pluralString + " handled: " + (count));}
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} |
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} |
| cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/erms/ErmsImportState.java | ||
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/** |
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* Copyright (C) 2007 EDIT |
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* European Distributed Institute of Taxonomy
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* European Distributed Institute of Taxonomy |
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* http://www.e-taxonomy.eu |
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*
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* |
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* The contents of this file are subject to the Mozilla Public License Version 1.1 |
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* See LICENSE.TXT at the top of this package for the full license terms. |
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*/ |
| ... | ... | |
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/** |
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* @author a.mueller |
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* @since 11.05.2009 |
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* @version 1.0 |
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*/ |
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public class ErmsImportState extends DbImportStateBase<ErmsImportConfigurator, ErmsImportState>{
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@SuppressWarnings("unused")
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private static final Logger logger = Logger.getLogger(ErmsImportState.class); |
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private Map<String, DefinedTermBase> dbCdmDefTermMap = new HashMap<String, DefinedTermBase>();
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private Map<String, User> usernameMap = new HashMap<String, User>();
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private Map<String, DefinedTermBase> dbCdmDefTermMap = new HashMap<>(); |
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private Map<String, User> usernameMap = new HashMap<>(); |
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private Map<Integer, Map<Integer,Rank>> rankMap; |
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private Set<Integer> acceptedTaxaKeys; |
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/* (non-Javadoc) |
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* @see eu.etaxonomy.cdm.io.common.IoStateBase#initialize(eu.etaxonomy.cdm.io.common.IoConfiguratorBase) |
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*/ |
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@Override |
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public void initialize(ErmsImportConfigurator config) {
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// super(config); |
| ... | ... | |
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public Map<String, DefinedTermBase> getDbCdmDefinedTermMap(){
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return this.dbCdmDefTermMap; |
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} |
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public void putDefinedTermToMap(String tableName, String id, DefinedTermBase term){
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this.dbCdmDefTermMap.put(tableName + "_" + id, term); |
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} |
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public void putDefinedTermToMap(String tableName, int id, DefinedTermBase term){
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putDefinedTermToMap(tableName, String.valueOf(id), term); |
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} |
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public User getUser(String username){
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@Override |
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public User getUser(String username){
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return usernameMap.get(username); |
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} |
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public void putUser(String username, User user){
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@Override |
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public void putUser(String username, User user){
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usernameMap.put(username, user); |
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} |
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this.rankMap = rankMap; |
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} |
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// /** |
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// * @return the rankMap |
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// */ |
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// public Map<Integer, Map<Integer,Rank>> getRankMap() {
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// return rankMap; |
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// } |
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/** |
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* Returns the CDM rank depending on the ERMS rankId and the ERMS kingdomId. Returns <code> |
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* null</code> if the rank does not exist. |
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this.acceptedTaxaKeys = acceptedTaxaKeys; |
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} |
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} |
| cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/erms/ErmsTaxonRelationImport.java | ||
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@Override |
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protected DbImportMapping<ErmsImportState, ErmsImportConfigurator> getMapping() {
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if (mapping == null){
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mapping = new DbImportMapping<ErmsImportState, ErmsImportConfigurator>();
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mapping = new DbImportMapping<>(); |
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mapping.addMapper(DbImportTaxIncludedInMapper.NewInstance("id", TAXON_NAMESPACE, "parentId", TAXON_NAMESPACE, "accParentId", TAXON_NAMESPACE, null));//there is only one tree
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| cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/erms/ErmsTransformer.java | ||
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public static final UUID uuidIsraeliExclusiveEconomicZoneMediterranean = UUID.fromString("d947e1c1-6d7b-47e1-ad91-703d15c5c55b");
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public static final UUID uuidPolishExclusiveEconomicZone = UUID.fromString("dc7f8339-528b-49ec-a8d9-c2be0441e933");
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//feature uuids |
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public static final UUID uuidRemark = UUID.fromString("648eab77-8469-4139-bbf4-3fb26ec15864");
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public static final UUID uuidAdditionalinformation = UUID.fromString("ef00c304-ce33-45ef-9543-0b9336a2b6eb");
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| ... | ... | |
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} |
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/* (non-Javadoc) |
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* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getNameTypeDesignationStatusByKey(java.lang.String) |
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*/ |
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@Override |
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public NameTypeDesignationStatus getNameTypeDesignationStatusByKey(String key) throws UndefinedTransformerMethodException {
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if (key == null){
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} |
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} |
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/* (non-Javadoc) |
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* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getNameTypeDesignationStatusUuid(java.lang.String) |
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*/ |
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@Override |
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public UUID getNameTypeDesignationStatusUuid(String key) throws UndefinedTransformerMethodException {
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//nott needed |
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return super.getNameTypeDesignationStatusUuid(key); |
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} |
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@Override |
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public Language getLanguageByKey(String ermsAbbrev) throws IllegalArgumentException {
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Set<String> unhandledLanguages = new HashSet<String>();
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Set<String> unhandledLanguages = new HashSet<>(); |
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if (StringUtils.isBlank(ermsAbbrev)){return null;
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}else if (ermsAbbrev.equals("ab")){return Language.ALBANIAN();
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}else if (ermsAbbrev.equals("af")){return Language.AFRIKAANS();
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} |
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} |
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/* (non-Javadoc) |
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* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getLanguageUuid(java.lang.String) |
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*/ |
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@Override |
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public UUID getLanguageUuid(String key) throws UndefinedTransformerMethodException {
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if (key == null){
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return super.getLanguageUuid(key); |
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} |
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/* (non-Javadoc) |
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* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getExtensionTypeByKey(java.lang.String) |
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*/ |
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@Override |
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public ExtensionType getExtensionTypeByKey(String key) throws UndefinedTransformerMethodException {
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if (key == null){return null;
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return null; |
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} |
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/* (non-Javadoc) |
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* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getExtensionTypeUuid(java.lang.String) |
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*/ |
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@Override |
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public UUID getExtensionTypeUuid(String key) |
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throws UndefinedTransformerMethodException {
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} |
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} |
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public static UUID uuidFromGuId(Integer guId){
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if (guId == null){return null;
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}else if (guId == 7788){ return uuidEuropeanMarineWaters;
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}else{
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throw new IllegalArgumentException("Unknown area id " + guId);
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} |
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} |
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public static Feature noteType2Feature(String type){
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Also available in: Unified diff
cleanup some ERMS imports