Revision 2d481abb
Added by Katja Luther almost 10 years ago
| cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/out/PesiTaxonExport.java | ||
|---|---|---|
| 777 | 777 |
// Increment pageNumber |
| 778 | 778 |
pageNumber++; |
| 779 | 779 |
} |
| 780 |
|
|
| 780 |
taxonList = null; |
|
| 781 | 781 |
while ((taxonList = getTaxonService().listTaxaByName(Taxon.class, "*", "*", "*", "*", Rank.SUBSPECIES(), pageSize, pageNumber)).size() > 0) {
|
| 782 | 782 |
HashMap<Integer, TaxonNameBase<?,?>> inferredSynonymsDataToBeSaved = new HashMap<Integer, TaxonNameBase<?,?>>(); |
| 783 | 783 |
|
| ... | ... | |
| 866 | 866 |
// Classification could not be determined directly from this TaxonNode |
| 867 | 867 |
// The stored classification from another TaxonNode is used. It's a simple, but not a failsafe fallback solution. |
| 868 | 868 |
if (taxonNodes.size() == 0) {
|
| 869 |
logger.error("Classification could not be determined directly from this Taxon: " + acceptedTaxon.getUuid() + " is misapplication? "+acceptedTaxon.isMisapplication()+ "). The classification of the last taxon is used");
|
|
| 869 |
//logger.error("Classification could not be determined directly from this Taxon: " + acceptedTaxon.getUuid() + " is misapplication? "+acceptedTaxon.isMisapplication()+ "). The classification of the last taxon is used");
|
|
| 870 | 870 |
|
| 871 | 871 |
} |
| 872 | 872 |
} |
| ... | ... | |
| 940 | 940 |
logger.error("This TaxonBase is not a Taxon even though it should be: " + taxonBase.getUuid() + " (" + taxonBase.getTitleCache() + ")");
|
| 941 | 941 |
} |
| 942 | 942 |
} |
| 943 |
taxonList = null; |
|
| 943 | 944 |
return inferredSynonymsDataToBeSaved; |
| 944 | 945 |
} |
| 945 | 946 |
|
| ... | ... | |
| 2524 | 2525 |
private PesiExportMapping getMapping() {
|
| 2525 | 2526 |
PesiExportMapping mapping = new PesiExportMapping(dbTableName); |
| 2526 | 2527 |
|
| 2527 |
mapping.addMapper(IdMapper.NewInstance("TaxonId"));
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|
| 2528 |
//mapping.addMapper(IdMapper.NewInstance("TaxonId"));
|
|
| 2528 | 2529 |
mapping.addMapper(DbObjectMapper.NewInstance("sec", "sourceFk")); //OLD:mapping.addMapper(MethodMapper.NewInstance("SourceFK", this.getClass(), "getSourceFk", standardMethodParameter, PesiExportState.class));
|
| 2529 | 2530 |
mapping.addMapper(MethodMapper.NewInstance("TaxonStatusFk", this.getClass(), "getTaxonStatusFk", standardMethodParameter, PesiExportState.class));
|
| 2530 | 2531 |
mapping.addMapper(MethodMapper.NewInstance("TaxonStatusCache", this.getClass(), "getTaxonStatusCache", standardMethodParameter, PesiExportState.class));
|
Also available in: Unified diff
changes in Fauna Europeae Import and Index Fungorum Import and PESI Export