1
|
/**
|
2
|
* Copyright (C) 2007 EDIT
|
3
|
* European Distributed Institute of Taxonomy
|
4
|
* http://www.e-taxonomy.eu
|
5
|
*
|
6
|
* The contents of this file are subject to the Mozilla Public License Version 1.1
|
7
|
* See LICENSE.TXT at the top of this package for the full license terms.
|
8
|
*/
|
9
|
|
10
|
package eu.etaxonomy.cdm.io.pesi.erms;
|
11
|
|
12
|
import java.sql.ResultSet;
|
13
|
import java.sql.SQLException;
|
14
|
import java.util.HashMap;
|
15
|
import java.util.HashSet;
|
16
|
import java.util.Map;
|
17
|
import java.util.Set;
|
18
|
|
19
|
import org.apache.log4j.Logger;
|
20
|
import org.springframework.stereotype.Component;
|
21
|
|
22
|
import eu.etaxonomy.cdm.io.common.IOValidator;
|
23
|
import eu.etaxonomy.cdm.io.common.mapping.DbImportAnnotationMapper;
|
24
|
import eu.etaxonomy.cdm.io.common.mapping.DbImportFeatureCreationMapper;
|
25
|
import eu.etaxonomy.cdm.io.common.mapping.DbImportMapping;
|
26
|
import eu.etaxonomy.cdm.io.common.mapping.DbImportMultiLanguageTextMapper;
|
27
|
import eu.etaxonomy.cdm.io.common.mapping.DbImportTextDataCreationMapper;
|
28
|
import eu.etaxonomy.cdm.io.common.mapping.out.DbLastActionMapper;
|
29
|
import eu.etaxonomy.cdm.io.pesi.erms.validation.ErmsNoteImportValidator;
|
30
|
import eu.etaxonomy.cdm.model.common.Annotation;
|
31
|
import eu.etaxonomy.cdm.model.common.AnnotationType;
|
32
|
import eu.etaxonomy.cdm.model.common.CdmBase;
|
33
|
import eu.etaxonomy.cdm.model.common.Language;
|
34
|
import eu.etaxonomy.cdm.model.common.MarkerType;
|
35
|
import eu.etaxonomy.cdm.model.description.TextData;
|
36
|
import eu.etaxonomy.cdm.model.taxon.TaxonBase;
|
37
|
|
38
|
/**
|
39
|
* @author a.mueller
|
40
|
* @since 20.02.2010
|
41
|
*/
|
42
|
@Component
|
43
|
public class ErmsNotesImport extends ErmsImportBase<Annotation> {
|
44
|
|
45
|
private static final long serialVersionUID = 3597110192009910328L;
|
46
|
|
47
|
@SuppressWarnings("unused")
|
48
|
private static final Logger logger = Logger.getLogger(ErmsNotesImport.class);
|
49
|
|
50
|
private DbImportMapping<ErmsImportState, ErmsImportConfigurator> mapping;
|
51
|
|
52
|
private static final String pluralString = "notes";
|
53
|
private static final String dbTableName = "notes";
|
54
|
private static final Class<?> cdmTargetClass = TextData.class;
|
55
|
|
56
|
public ErmsNotesImport(){
|
57
|
super(pluralString, dbTableName, cdmTargetClass);
|
58
|
}
|
59
|
|
60
|
@Override
|
61
|
protected String getRecordQuery(ErmsImportConfigurator config) {
|
62
|
String strRecordQuery =
|
63
|
" SELECT n.*, " +
|
64
|
" s.sessiondate lastActionDate, a.action_name lastAction, s.ExpertName " +
|
65
|
" FROM notes n " +
|
66
|
" LEFT OUTER JOIN notes_sessions MN ON MN.note_id = n.id " +
|
67
|
" LEFT OUTER JOIN [sessions] s ON s.id = MN.session_id " +
|
68
|
" LEFT OUTER JOIN actions a ON a.id = MN.action_id " +
|
69
|
" WHERE ( n.id IN (" + ID_LIST_TOKEN + ") )" +
|
70
|
" ORDER BY n.id, s.sessiondate DESC, a.id DESC ";
|
71
|
return strRecordQuery;
|
72
|
}
|
73
|
|
74
|
Integer lastNoteId = null;
|
75
|
@Override
|
76
|
protected boolean ignoreRecord(ResultSet rs) throws SQLException {
|
77
|
Integer id = rs.getInt("id");
|
78
|
boolean result = id.equals(lastNoteId);
|
79
|
lastNoteId = id;
|
80
|
return result;
|
81
|
}
|
82
|
|
83
|
@Override
|
84
|
protected DbImportMapping<ErmsImportState, ErmsImportConfigurator> getMapping() {
|
85
|
if (mapping == null){
|
86
|
mapping = new DbImportMapping<>();
|
87
|
mapping.addMapper(DbImportTextDataCreationMapper.NewInstance("id", NOTES_NAMESPACE, "tu_id", TAXON_NAMESPACE));
|
88
|
mapping.addMapper(DbImportFeatureCreationMapper.NewInstance("type", FEATURE_NAMESPACE, "type", "type", "type"));
|
89
|
mapping.addMapper(DbImportMultiLanguageTextMapper.NewInstance("note", "lan_id", LANGUAGE_NAMESPACE, "Text", true));
|
90
|
Language notesNoteLanguage = null;
|
91
|
mapping.addMapper(DbImportAnnotationMapper.NewInstance("note", AnnotationType.EDITORIAL(), notesNoteLanguage));
|
92
|
//last action
|
93
|
AnnotationType speciesExpertNameAnnType = getAnnotationType(ErmsTransformer.uuidAnnSpeciesExpertName, "species expert name", "species expert name", "species expert name");
|
94
|
mapping.addMapper(DbImportAnnotationMapper.NewInstance("ExpertName", speciesExpertNameAnnType)); //according to sql script ExpertName maps to SpeciesExpertName in ERMS
|
95
|
AnnotationType lastActionDateType = getAnnotationType(DbLastActionMapper.uuidAnnotationTypeLastActionDate, "Last action date", "Last action date", null);
|
96
|
mapping.addMapper(DbImportAnnotationMapper.NewInstance("lastActionDate", lastActionDateType));
|
97
|
AnnotationType lastActionType = getAnnotationType(DbLastActionMapper.uuidAnnotationTypeLastAction, "Last action", "Last action", null);
|
98
|
MarkerType hasNoLastActionMarkerType = getMarkerType(DbLastActionMapper.uuidMarkerTypeHasNoLastAction, "has no last action", "No last action information available", "no last action");
|
99
|
mapping.addMapper(DbImportAnnotationMapper.NewInstance("lastAction", lastActionType, hasNoLastActionMarkerType));
|
100
|
}
|
101
|
return mapping;
|
102
|
}
|
103
|
|
104
|
@Override
|
105
|
public Map<Object, Map<String, ? extends CdmBase>> getRelatedObjectsForPartition(ResultSet rs, ErmsImportState state) {
|
106
|
|
107
|
String nameSpace;
|
108
|
Set<String> idSet;
|
109
|
Map<Object, Map<String, ? extends CdmBase>> result = new HashMap<>();
|
110
|
|
111
|
try{
|
112
|
Set<String> taxonIdSet = new HashSet<>();
|
113
|
Set<String> languageIdSet = new HashSet<>();
|
114
|
while (rs.next()){
|
115
|
handleForeignKey(rs, taxonIdSet, "tu_id");
|
116
|
handleForeignKey(rs, languageIdSet, "lan_id");
|
117
|
}
|
118
|
|
119
|
//taxon map
|
120
|
nameSpace = ErmsImportBase.TAXON_NAMESPACE;
|
121
|
idSet = taxonIdSet;
|
122
|
@SuppressWarnings("rawtypes")
|
123
|
Map<String, TaxonBase> taxonMap = getCommonService().getSourcedObjectsByIdInSourceC(TaxonBase.class, idSet, nameSpace);
|
124
|
result.put(nameSpace, taxonMap);
|
125
|
|
126
|
//language map
|
127
|
nameSpace = LANGUAGE_NAMESPACE;
|
128
|
Map<String, Language> languageMap = new HashMap<>();
|
129
|
ErmsTransformer transformer = new ErmsTransformer();
|
130
|
for (String lanAbbrev: languageIdSet){
|
131
|
Language language = transformer.getLanguageByKey(lanAbbrev);
|
132
|
languageMap.put(lanAbbrev, language);
|
133
|
}
|
134
|
result.put(nameSpace, languageMap);
|
135
|
|
136
|
} catch (SQLException e) {
|
137
|
throw new RuntimeException(e);
|
138
|
}
|
139
|
return result;
|
140
|
}
|
141
|
|
142
|
@Override
|
143
|
protected boolean doCheck(ErmsImportState state){
|
144
|
IOValidator<ErmsImportState> validator = new ErmsNoteImportValidator();
|
145
|
return validator.validate(state);
|
146
|
}
|
147
|
|
148
|
@Override
|
149
|
protected boolean isIgnore(ErmsImportState state){
|
150
|
return ! state.getConfig().isDoNotes();
|
151
|
}
|
152
|
}
|