EDIT

/**

* Copyright (C) 2009 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.app.pesi;

import org.apache.log4j.Logger;

import eu.etaxonomy.cdm.app.common.CdmDestinations;

import eu.etaxonomy.cdm.app.common.PesiDestinations;

import eu.etaxonomy.cdm.database.ICdmDataSource;

import eu.etaxonomy.cdm.io.common.CdmDefaultExport;

import eu.etaxonomy.cdm.io.common.DbExportConfiguratorBase.IdType;

import eu.etaxonomy.cdm.io.common.IExportConfigurator.CHECK;

import eu.etaxonomy.cdm.io.common.IExportConfigurator.DO_REFERENCES;

import eu.etaxonomy.cdm.io.common.Source;

import eu.etaxonomy.cdm.io.pesi.out.PesiExportConfigurator;

import eu.etaxonomy.cdm.io.pesi.out.PesiTransformer;

/**

 * @author a.mueller

 * @author e.-m.lee

 * @since 16.02.2010

 */

public class PesiExportActivatorEM {

	@SuppressWarnings("unused")

	private static final Logger logger = Logger.getLogger(PesiExportActivatorEM.class);

//	static final ICdmDataSource cdmSource = CdmDestinations.test_cdm_pesi_euroMed();

//	static final ICdmDataSource cdmSource = CdmDestinations.cdm_test_local_mysql_euromed();

	static final ICdmDataSource cdmSource = CdmDestinations.cdm_pesi2019_final();

	//database validation status (create, update, validate ...)

	static final Source pesiDestination = PesiDestinations.pesi_test_local_CDM_EM2PESI();

//	static final Source pesiDestination = PesiDestinations.pesi_test_local_CDM_EM2PESI_2();

// ****************** ALL *****************************************

	boolean deleteAll = true;

	DO_REFERENCES doReferences =  DO_REFERENCES.ALL;

	boolean doTaxa = true;

	boolean doRelTaxa = true;

	boolean doDescriptions = true;

	boolean doPureNames = doTaxa;

	boolean doTreeIndex = doTaxa;

	boolean doParentAndBiota = doTaxa;

    boolean doAdditionalTaxonSource = false;  //do not exist in E+M

    boolean doInferredSynonyms = false;   //no inferred synonyms in E+M

	boolean doEcologyAndLink = false;   //do not exist in E+M

// ************************ NONE **************************************** //

//	boolean deleteAll = false;

//	DO_REFERENCES doReferences =  DO_REFERENCES.NONE;

//	boolean doTaxa = false;

//	boolean doRelTaxa = false;

//	boolean doDescriptions = true;

//

//    boolean doPureNames = doTaxa;

//    boolean doTreeIndex = doTaxa;

//    boolean doParentAndBiota = doTaxa;

//    boolean doAdditionalTaxonSource = false;  //do not exist in E+M

//    boolean doInferredSynonyms = false;   //no inferred synonyms in E+M

//    boolean doEcologyAndLink = false;   //do not exist in E+M

    //check - export

    static final CHECK check = CHECK.EXPORT_WITHOUT_CHECK;

    //Taxon names can't be mapped to their CDM ids as PESI Taxon table mainly holds taxa and there IDs. We ad nameIdStart to the TaxonName id to get a unique id

    static final int nameIdStart = 10000000;

    static final IdType idType = IdType.CDM_ID_WITH_EXCEPTIONS;

    static final int partitionSize = 1000;

	public boolean 	doExport(ICdmDataSource source){

	    System.out.println("Start export from " + source.getDatabase() + " to PESI ("+ pesiDestination.getDatabase() + ") ...");

		//make PESI Source

		Source destination = pesiDestination;

		PesiTransformer transformer = new PesiTransformer(destination);

		PesiExportConfigurator config = PesiExportConfigurator.NewInstance(destination, source, transformer);

		config.setDoTaxa(doTaxa);

		config.setDoPureNames(doPureNames);

		config.setDoRelTaxa(doRelTaxa);

		config.setDoReferences(doReferences);

		config.setDoTreeIndex(doTreeIndex);

		config.setDoParentAndBiota(doParentAndBiota);

		config.setDoInferredSynonyms(doInferredSynonyms);

		config.setDoDescription(doDescriptions);

		config.setDoAdditionalTaxonSource(doAdditionalTaxonSource);

		config.setDoEcologyAndLink(doEcologyAndLink);

		config.setCheck(check);

		config.setLimitSave(partitionSize);

		config.setIdType(idType);

		config.setNameIdStart(nameIdStart);

		if (deleteAll){

			destination.update("EXEC sp_deleteAllData");

		}

		// invoke export

		CdmDefaultExport<PesiExportConfigurator> pesiExport = new CdmDefaultExport<>();

		boolean result = pesiExport.invoke(config).isSuccess();

		System.out.println("End export to PESI ("+ destination.getDatabase() + ")..." + (result? "(successful)":"(with errors)"));

		return result;

	}

	public static void main(String[] args) {

		PesiExportActivatorEM ex = new PesiExportActivatorEM();

		ICdmDataSource source = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmSource;

//		Connection con = pesiDestination.getConnection();

//		System.out.println(con);

		ex.doExport(source);

		System.exit(0);

	}

}