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/**
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*
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*/
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package eu.etaxonomy.cdm.database.update;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.api.application.CdmApplicationController;
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import eu.etaxonomy.cdm.common.monitor.DefaultProgressMonitor;
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import eu.etaxonomy.cdm.config.AccountStore;
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import eu.etaxonomy.cdm.database.CdmDataSource;
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import eu.etaxonomy.cdm.database.DbSchemaValidation;
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import eu.etaxonomy.cdm.database.ICdmDataSource;
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import eu.etaxonomy.cdm.io.api.application.CdmIoApplicationController;
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import eu.etaxonomy.cdm.model.taxon.Classification;
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/**
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* @author a.mueller
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*/
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public class BgbmInstancesUpdater {
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private static final Logger logger = Logger.getLogger(BgbmInstancesUpdater.class);
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private static String integrationServer = "160.45.63.201";
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private static String productionServer = "160.45.63.171";
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// private static String testServer = "160.45.63.175";
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private static String testServer = "edit-test.bgbm.fu-berlin.de"; //preliminary
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private static String mexicoServer = "132.248.13.83";
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private static String[] integrationDatabases = new String[]{
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"cdm_integration_cichorieae",
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"cdm_integration_cyprus",
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"cdm_integration_diptera",
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"cdm_integration_flora_malesiana",
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"cdm_integration_palmae",
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"cdm_integration_reference"
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};
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private static String[] testDatabases = new String[]{
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"cdm_bgbm_edit_usergroup",
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"cdm_caryo_nepenthes",
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"cdm_caryo_spp","cdm_causcasus_workshop",
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"cdm_corvidae", "cdm_cyprus","cdm_edaphobase_test",
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"cdm_edit_algaterra",
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"cdm_edit_cichorieae",
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"cdm_edit_flora_central_africa", "cdm_edit_flora_malesiana",
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"cdm_edit_globis", "cdm_edit_palmae",
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"cdm_flora_cuba",
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"cdm_flora_guianas",
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"cdm_flore_gabon",
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"cdm_greece_bupleurum","cdm_greece_bupleurum_01","cdm_greece_bupleurum_04",
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"cdm_mt_moose",
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"cdm_mt_standardliste",
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// "cdm_pesi_all",
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"cdm_pesi_erms", "cdm_pesi_euromed", "cdm_pesi_fauna_europaea",
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"cdm_phycobank",
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"cdm_production_additivity_ontology",
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"cdm_rem_conf_am",
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"cdm_rl_animalia","cdm_rl_german_sl","cdm_rl_mammalia", "cdm_rl_plantae",
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"cdm_salvador","cdm_test1","cdm_test2",
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"cdm_test_euromed",
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"cdm_vibrant_index"
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};
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private static String[] testDatabasesOthers = new String[]{"cdm_caryo_amaranthaceae",
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"cdm_caryo_caryophyllales","cdm_flora_malesiana_prospective","cdm_pesi_all",
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};
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private static String[] phycobankDatabase = new String[]{
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"cdm_production_phycobank"
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};
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private static String[] mexicoDatabase = new String[]{
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"cdm_flora_mexico"
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};
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private static String[] productionDatabases = new String[]{
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"cdm_production_col",
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"cdm_production_algaterra",
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"cdm_production_algaterranew",
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"cdm_production_asteraceae",
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"cdm_production_bromeliaceae",
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"cdm_production_campanulaceae",
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"cdm_production_caryo_amaranthaceae",
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"cdm_production_caryo_nepenthaceae",
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"cdm_production_caryophyllales",
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"cdm_production_caryophyllales_spp",
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"cdm_production_casearia",
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"cdm_production_caucasus",
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"cdm_production_cichorieae",
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"cdm_production_corvidae",
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"cdm_production_cyprus",
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"cdm_production_diptera",
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"cdm_production_edaphobase",
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"cdm_production_euromed",
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"cdm_production_euromed_caucasus",
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"cdm_production_flora_central_africa",
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"cdm_production_flora_cuba",
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"cdm_production_flora_greece",
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"cdm_production_flora_guianas",
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"cdm_production_flora_malesiana",
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"cdm_production_flora_malesiana_clean",
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"cdm_production_flora_malesiana_prospective",
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"cdm_production_flora_uzbekistan",
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"cdm_production_flore_gabon",
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"cdm_production_globis",
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"cdm_production_greece_bupleurum",
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"cdm_production_lichenes",
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"cdm_production_myristicaceae",
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"cdm_production_oxalis",
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"cdm_production_palmae",
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"cdm_production_piB_ants_pilot",
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"cdm_production_piB_campylopus_pilot",
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"cdm_production_piB_chenopodium_pilot",
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"cdm_production_piB_eupolybothrus_pilot",
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"cdm_production_piB_lactarius_pilot",
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"cdm_production_piB_nephrolepis_pilot",
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"cdm_production_piB_spiders_pilot",
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"cdm_production_rl_animalia",
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"cdm_production_rl_animalia_final",
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"cdm_production_rl_armeria_demo",
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"cdm_production_rl_german_sl",
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"cdm_production_rl_lumbricidae",
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"cdm_production_rl_mammalia",
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"cdm_production_rl_moose",
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"cdm_production_rl_plantae",
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"cdm_production_rl_standardliste",
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"cdm_production_rubiaceae_mexico",
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"cdm_production_salvador",
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"cdm_production_vibrant_index"
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};
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static BgbmServer bgbmServer = BgbmServer.TEST;
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static String username = "edit";
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private static void updateToCurrentVersion() {
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DbSchemaValidation schema = DbSchemaValidation.VALIDATE;
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String server = bgbmServer.server;
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for (String database : bgbmServer.databases){
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logger.warn("Update: " + database + " ... ");
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ICdmDataSource dataSource = CdmDataSource.NewMySqlInstance(server, database, username, AccountStore.readOrStorePassword(server, database, username, null));
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SchemaUpdateResult result = new SchemaUpdateResult();
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try {
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CdmUpdater updater = new CdmUpdater();
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System.out.println(database);
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result = updater.updateToCurrentVersion(dataSource, DefaultProgressMonitor.NewInstance());
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System.out.println(result.createReport());
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CdmApplicationController appCtr = CdmIoApplicationController.NewInstance(dataSource,schema);
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System.out.println(appCtr.getClassificationService().count(Classification.class));
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} catch (Exception e) {
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result.addException(e, e.getMessage());
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e.printStackTrace();
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}
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if(!result.isSuccess() ){
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logger.warn("Problem");
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System.exit(1);
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}
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logger.warn("Update: " + database + " ... DONE ");
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}
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}
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private static void singleUpdateStep(boolean startApp) {
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DbSchemaValidation schema = DbSchemaValidation.VALIDATE;
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String server = bgbmServer.server;
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for (String database : bgbmServer.databases){
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logger.warn("Update: " + database + " ... ");
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ICdmDataSource dataSource = CdmDataSource.NewMySqlInstance(server, database, username, AccountStore.readOrStorePassword(server, database, username, null));
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SchemaUpdateResult result = new SchemaUpdateResult();
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try {
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System.out.println(database);
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//define step here !!!
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SchemaUpdaterStepBase step = IndexRenamer.NewStringInstance(null, "TaxonName",
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"taxonNameBaseNameCacheIndex", "taxonNameNameCacheIndex", "nameCache", 255);
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SchemaUpdaterStepBase step2 = IndexRenamer.NewStringInstance(null, "TaxonName",
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"taxonNameBaseTitleCacheIndex", "taxonNameTitleCacheIndex", "titleCache", 333);
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dataSource.startTransaction();
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step.invoke(dataSource, DefaultProgressMonitor.NewInstance(), CaseType.caseTypeOfDatasource(dataSource), result);
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step2.invoke(dataSource, DefaultProgressMonitor.NewInstance(), CaseType.caseTypeOfDatasource(dataSource), result);
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dataSource.commitTransaction();
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System.out.println(result.createReport());
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if (startApp){
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CdmApplicationController appCtr = CdmIoApplicationController.NewInstance(dataSource,schema);
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System.out.println(appCtr.getClassificationService().count(Classification.class));
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}
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} catch (Exception e) {
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result.addException(e, e.getMessage());
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e.printStackTrace();
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}
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if(!result.isSuccess() ){
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logger.warn("Problem");
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System.exit(1);
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}
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logger.warn("Update: " + database + " ... DONE ");
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}
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}
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public static void main(String[] args) {
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updateToCurrentVersion();
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// singleUpdateStep(false);
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System.exit(0);
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}
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private enum BgbmServer{
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INTEGRATION (integrationServer, integrationDatabases),
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TEST(testServer, testDatabases),
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PRODUCTION(productionServer, productionDatabases),
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PHYCOBANK(productionServer, phycobankDatabase),
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MEXICO(mexicoServer, mexicoDatabase);
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private final String server;
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private final String[] databases;
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private BgbmServer(String server, String[] databases){
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this.server = server;
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this.databases = databases;
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}
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}
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}
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