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/**
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* Copyright (C) 2009 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.app.eflora;
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import java.util.Collection;
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import java.util.HashMap;
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import java.util.HashSet;
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import java.util.List;
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import java.util.Map;
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import java.util.Set;
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import java.util.UUID;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.api.application.ICdmRepository;
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import eu.etaxonomy.cdm.api.service.ITermService;
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import eu.etaxonomy.cdm.common.URI;
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import eu.etaxonomy.cdm.database.ICdmDataSource;
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import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
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import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
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import eu.etaxonomy.cdm.io.common.events.IIoObserver;
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import eu.etaxonomy.cdm.io.common.events.LoggingIoObserver;
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import eu.etaxonomy.cdm.io.markup.FeatureSorter;
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import eu.etaxonomy.cdm.io.markup.FeatureSorterInfo;
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import eu.etaxonomy.cdm.io.markup.MarkupImportConfigurator;
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import eu.etaxonomy.cdm.io.markup.MarkupImportState;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.term.TermNode;
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import eu.etaxonomy.cdm.model.term.TermTree;
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/**
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* @author a.mueller
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*/
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public class EfloraActivatorBase {
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private static final Logger logger = Logger.getLogger(EfloraActivatorBase.class);
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protected MarkupImportConfigurator config;
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protected CdmDefaultImport<MarkupImportConfigurator> myImport;
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protected IIoObserver observer = new LoggingIoObserver();
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protected Set<IIoObserver> observerList = new HashSet<>();
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protected MarkupImportConfigurator doImport(URI source, ICdmDataSource cdmDestination, CHECK check, boolean h2ForCheck){
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observerList.add(observer);
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if (h2ForCheck && cdmDestination.getDatabaseType().equals(CdmDestinations.localH2().getDatabaseType())){
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check = CHECK.CHECK_ONLY;
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}
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config = MarkupImportConfigurator.NewInstance(source, cdmDestination);
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config.setObservers(observerList);
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config.setCheck(check);
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myImport = new CdmDefaultImport<MarkupImportConfigurator>();
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return config;
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}
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protected TermTree<Feature> makeAutomatedFeatureTree(ICdmRepository app,
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MarkupImportState state, UUID featureTreeUuid, String featureTreeTitle){
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System.out.println("Start creating automated Feature Tree");
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TermTree<Feature> tree = TermTree.NewFeatureInstance(featureTreeUuid);
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tree.setTitleCache(featureTreeTitle, true);
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TermNode<Feature> root = tree.getRoot();
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ITermService termService = app.getTermService();
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FeatureSorter sorter = new FeatureSorter();
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TermNode<Feature> descriptionNode = null;
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//general features
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Map<String, List<FeatureSorterInfo>> generalList = state.getGeneralFeatureSorterListMap();
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List<UUID> uuidList = sorter.getSortOrder(generalList);
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Map<UUID, Feature> map = makeUuidMap(uuidList, termService);
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for (UUID key : uuidList){
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Feature feature = map.get(key);
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TermNode<Feature> node = root.addChild(feature);
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if (feature.equals(Feature.DESCRIPTION())){
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descriptionNode = node;
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}
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}
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TermNode<Feature> newNode = root.addChild(Feature.CITATION());
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//description features
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if (descriptionNode != null){
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Map<String, List<FeatureSorterInfo>> charList = state.getCharFeatureSorterListMap();
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uuidList = sorter.getSortOrder(charList);
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map = makeUuidMap(uuidList, termService);
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for (UUID key : uuidList){
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Feature feature = map.get(key);
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descriptionNode.addChild(feature);
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}
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}else{
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logger.warn("No description node found. Could not create feature nodes for description features.");
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}
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//save tree
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app.getTermTreeService().saveOrUpdate(tree);
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System.out.println("End creating automated Feature Tree");
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return tree;
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}
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private Map<UUID,Feature> makeUuidMap(Collection<UUID> uuids, ITermService termService){
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HashSet<UUID> uuidSet = new HashSet<>();
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uuidSet.addAll(uuids);
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List<Feature> featureSet = (List)termService.find(uuidSet);
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Map<UUID,Feature> result = new HashMap<>();
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for (Feature feature : featureSet){
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result.put(feature.getUuid(), feature);
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}
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return result;
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}
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protected void executeVolume(URI source, boolean include) {
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if (include){
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System.out.println("\nStart import from ("+ source.toString() + ") ...");
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config.setSource(source);
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myImport.invoke(config);
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System.out.println("End import from ("+ source.toString() + ")...");
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}
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}
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}
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