EDIT

/**

* Copyright (C) 2007 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.app.wp6.cichorieae;

import java.io.File;

import eu.etaxonomy.cdm.common.URI;

import java.net.URISyntaxException;

import java.util.UUID;

import org.apache.log4j.Logger;

import eu.etaxonomy.cdm.api.application.ICdmRepository;

import eu.etaxonomy.cdm.app.berlinModelImport.BerlinModelSources;

import eu.etaxonomy.cdm.app.berlinModelImport.TreeCreator;

import eu.etaxonomy.cdm.app.common.CdmDestinations;

import eu.etaxonomy.cdm.app.images.ImageImportConfigurator;

import eu.etaxonomy.cdm.database.DbSchemaValidation;

import eu.etaxonomy.cdm.database.ICdmDataSource;

import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator;

import eu.etaxonomy.cdm.io.common.CdmDefaultImport;

import eu.etaxonomy.cdm.io.common.IImportConfigurator;

import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;

import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;

import eu.etaxonomy.cdm.io.common.IImportConfigurator.EDITOR;

import eu.etaxonomy.cdm.io.common.ImportResult;

import eu.etaxonomy.cdm.io.common.Source;

import eu.etaxonomy.cdm.io.wp6.CichorieaeImageImport;

import eu.etaxonomy.cdm.model.description.Feature;

import eu.etaxonomy.cdm.model.name.NomenclaturalCode;

import eu.etaxonomy.cdm.model.name.TaxonName;

import eu.etaxonomy.cdm.model.term.TermTree;

/**

 * TODO add the following to a wiki page:

 * HINT: If you are about to import into a mysql data base running under windows and if you wish to dump and restore the resulting data bas under another operation systen

 * you must set the mysql system variable lower_case_table_names = 0 in order to create data base with table compatible names.

 *

 *

 * @author a.mueller

 *

 */

public class CichorieaeActivator {

	private static final Logger logger = Logger.getLogger(CichorieaeActivator.class);

	//database validation status (create, update, validate ...)

	static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;

	static final Source berlinModelSource = BerlinModelSources.EDIT_CICHORIEAE();

	static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql_test();

	static final UUID secUuid = UUID.fromString("6924c75d-e0d0-4a6d-afb7-3dd8c71195ca");

	static final UUID classificationUuid = UUID.fromString("534e190f-3339-49ba-95d9-fa27d5493e3e");

//	static final UUID treeUuid = UUID.fromString("00db28a7-50e1-4abc-86ec-b2a8ce870de9");

	static final int sourceSecId = 7800000;

	static final UUID featureTreeUuid = UUID.fromString("ae9615b8-bc60-4ed0-ad96-897f9226d568");

	static final Object[] featureKeyList = new Integer[]{1, 43, 31, 4, 12, 98, 41};

	/* --------- MEDIA recources ------------ */

	static final boolean stopOnMediaErrors = false;

	static final String protologueUrlString = "http://wp5.e-taxonomy.eu/dataportal/cichorieae/media/protolog/";

	//Mac

	//static final File protologuePath = new File("/Volumes/protolog/protolog/");

	//Windows

	public static final String imageFolderString  = "//media/editwp6/photos";

	static final File protologuePath = new File("//media/editwp6/protolog");

//	public static final File imageFolder  = new File("/media/photos");

//	static final File protologuePath = new File("/media/protolog");

	/* -------------------------------------- */

	// set to zero for unlimited nameFacts

	static final int maximumNumberOfNameFacts = 0;

	static final int recordsPerTransaction = 2000;

	//should the other imports run as well?

	static final boolean includeTaraxacum = true;

	static final boolean includeImages = false;

	//check - import

	static final CHECK check = CHECK.CHECK_AND_IMPORT;

	//editor - import

	static final EDITOR editor = EDITOR.EDITOR_AS_EDITOR;

	//NomenclaturalCode

	static final NomenclaturalCode nomenclaturalCode = NomenclaturalCode.ICNAFP;

	//ignore null

	static final boolean ignoreNull = true;

	static boolean useClassification = true;

// **************** ALL *********************

	static final boolean doUser = true;

	//authors

	static final boolean doAuthors = true;

	//references

	static final DO_REFERENCES doReferences =  DO_REFERENCES.ALL;

	//names

	static final boolean doTaxonNames = true;

	static final boolean doRelNames = true;

	static final boolean doNameStatus = true;

	static final boolean doTypes = true;

	static final boolean doNameFacts = true;

	//taxa

	static final boolean doTaxa = true;

	static final boolean doRelTaxa = true;

	static final boolean doFacts = false;

	static final boolean doOccurences = false;

	static final boolean doCommonNames = true;

	//etc.

	static final boolean doMarker = false;

// **************** SELECTED *********************

//

//	static final boolean doUser = false;

//	//authors

//	static final boolean doAuthors = false;

//	//references

//	static final DO_REFERENCES doReferences =  DO_REFERENCES.NONE;

//	//names

//	static final boolean doTaxonNames = false;

//	static final boolean doRelNames = false;

//	static final boolean doNameStatus = false;

//	static final boolean doTypes = false;

//	static final boolean doNameFacts = false;

//

//	//taxa

//	static final boolean doTaxa = false;

//	static final boolean doRelTaxa = false;

//	static final boolean doCommonNames = false;

//	static final boolean doFacts = false;

//	static final boolean doOccurences = false;

//

//	//etc.

//	static final boolean doMarker = false;

	private ImportResult doInvoke(ICdmDataSource destination){

		ImportResult success = new ImportResult();

		Source source = berlinModelSource;

		BerlinModelImportConfigurator bmImportConfigurator = BerlinModelImportConfigurator.NewInstance(source,  destination);

		bmImportConfigurator.setClassificationUuid(classificationUuid);

		bmImportConfigurator.setSourceSecId(sourceSecId);

		bmImportConfigurator.setNomenclaturalCode(nomenclaturalCode);

		bmImportConfigurator.setIgnoreNull(ignoreNull);

		bmImportConfigurator.setDoAuthors(doAuthors);

		bmImportConfigurator.setDoReferences(doReferences);

		bmImportConfigurator.setDoTaxonNames(doTaxonNames);

		bmImportConfigurator.setDoRelNames(doRelNames);

		bmImportConfigurator.setDoNameStatus(doNameStatus);

		bmImportConfigurator.setDoTypes(doTypes);

		bmImportConfigurator.setDoNameFacts(doNameFacts);

		bmImportConfigurator.setUseClassification(useClassification);

		bmImportConfigurator.setDoTaxa(doTaxa);

		bmImportConfigurator.setDoRelTaxa(doRelTaxa);

		bmImportConfigurator.setDoFacts(doFacts);

		bmImportConfigurator.setDoOccurrence(doOccurences);

		bmImportConfigurator.setDoCommonNames(doCommonNames);

		bmImportConfigurator.setDoMarker(doMarker);

		bmImportConfigurator.setDoUser(doUser);

		bmImportConfigurator.setEditor(editor);

		bmImportConfigurator.setDbSchemaValidation(hbm2dll);

		bmImportConfigurator.setRecordsPerTransaction(recordsPerTransaction);

		// protologueResourceLocations

		if ( protologuePath.exists() && protologuePath.isDirectory()){

			bmImportConfigurator.setMediaUrl(protologueUrlString);

			bmImportConfigurator.setMediaPath(protologuePath);

		}else{

			if(stopOnMediaErrors){

				logger.error("Could not configure protologue ResourceLocations -> will quit.");

				System.exit(-1);

			}

			logger.error("Could not configure protologue ResourceLocations");

		}

		File imageFolder = new File(imageFolderString);

		// also check the image source folder

		if ( !imageFolder.exists() || !imageFolder.isDirectory()){

			if(stopOnMediaErrors){

				logger.error("Could not configure imageFolder  -> will quit.");

				System.exit(-1);

			}

			logger.error("Could not configure imageFolder");

		}

		// maximum number of name facts to import

		bmImportConfigurator.setMaximumNumberOfNameFacts(maximumNumberOfNameFacts);

		bmImportConfigurator.setCheck(check);

		bmImportConfigurator.setEditor(editor);

		// invoke import

		CdmDefaultImport<BerlinModelImportConfigurator> bmImport = new CdmDefaultImport<BerlinModelImportConfigurator>();

		success = bmImport.invoke(bmImportConfigurator);

		if (doFacts && (bmImportConfigurator.getCheck().equals(CHECK.CHECK_AND_IMPORT)  || bmImportConfigurator.getCheck().equals(CHECK.IMPORT_WITHOUT_CHECK) )   ){

			ICdmRepository app = bmImport.getCdmAppController();

			TaxonName obj = app.getCommonService().getSourcedObjectByIdInSource(TaxonName.class, "1000027", null);

			logger.info(obj);

			//make feature tree

			TermTree<Feature> tree = TreeCreator.flatTree(featureTreeUuid, bmImportConfigurator.getFeatureMap(), featureKeyList);

			tree.getRoot().addChild(Feature.IMAGE());

			tree.getRoot().addChild(Feature.DISTRIBUTION(), 2);

			app.getFeatureTreeService().saveOrUpdate(tree);

		}

		System.out.println("End import from BerlinModel ("+ source.getDatabase() + ")...");

		try {

			if (includeTaraxacum) {

				System.out.println("Start Taraxacum import from BerlinModel ...");

				TaraxacumActivator taraxacumActivator = new TaraxacumActivator();

				ImportResult successTaraxacum =  taraxacumActivator.doImport(destination, DbSchemaValidation.UPDATE);

				success.merge(successTaraxacum);

				logger.warn("Taraxacum import still needs to be tested");

				System.out.println("End Taraxacum import from BerlinModel ...");

			}

		} catch (Exception e) {

		    success.addException(e);

			logger.error("Exception occurred during Taraxacum import.");

			e.printStackTrace();

		}

		if (includeImages) {

			System.out.println("Start importing images ...");

			CdmDefaultImport<IImportConfigurator> imageImporter = new CdmDefaultImport<IImportConfigurator>();

			URI imageFolderCichorieae;

			try {

				imageFolderCichorieae = new URI(CichorieaeActivator.imageFolderString);

				ImageImportConfigurator imageConfigurator = ImageImportConfigurator.NewInstance(

						imageFolderCichorieae, destination, CichorieaeImageImport.class);

				imageConfigurator.setSecUuid(secUuid);

				imageConfigurator.setClassificationUuid(classificationUuid);

				ImportResult resultImageImport = imageImporter.invoke(imageConfigurator);

				success.merge(resultImageImport);

			} catch (URISyntaxException e) {

				e.printStackTrace();

			}

			System.out.println("End importing images ...");

		}

		logger.warn("!!!! NOTE: RefDetail notes and RelPTaxon notes are not imported automatically. Please check for these notes and import them manually.");

		return success;

	}

	/**

	 * @param args

	 */

	public static void main(String[] args) {

		ICdmDataSource destination = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination;

		System.out.println("Start import from BerlinModel("+ berlinModelSource.getDatabase() + ") to " + destination.getDatabase() + " ...");

		CichorieaeActivator me = new CichorieaeActivator();

		me.doInvoke(destination);

	}

}