EDIT

/**

* Copyright (C) 2016 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.app.mexico;

import eu.etaxonomy.cdm.common.URI;

import java.util.UUID;

import org.apache.log4j.Logger;

import eu.etaxonomy.cdm.api.application.ICdmRepository;

import eu.etaxonomy.cdm.app.common.CdmDestinations;

import eu.etaxonomy.cdm.database.DbSchemaValidation;

import eu.etaxonomy.cdm.database.ICdmDataSource;

import eu.etaxonomy.cdm.io.common.CdmDefaultImport;

import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;

import eu.etaxonomy.cdm.io.mexico.MexicoConabioImportConfigurator;

import eu.etaxonomy.cdm.io.mexico.MexicoConabioTransformer;

import eu.etaxonomy.cdm.model.agent.Institution;

import eu.etaxonomy.cdm.model.agent.Person;

import eu.etaxonomy.cdm.model.common.Language;

import eu.etaxonomy.cdm.model.common.VerbatimTimePeriod;

import eu.etaxonomy.cdm.model.description.Feature;

import eu.etaxonomy.cdm.model.reference.Reference;

import eu.etaxonomy.cdm.model.reference.ReferenceFactory;

import eu.etaxonomy.cdm.model.term.Representation;

import eu.etaxonomy.cdm.model.term.TermNode;

import eu.etaxonomy.cdm.model.term.TermTree;

import eu.etaxonomy.cdm.strategy.parser.TimePeriodParser;

/**

 * @author a.mueller

 * @since 16.06.2016

 */

public class MexicoConabioActivator {

    private static final Logger logger = Logger.getLogger(MexicoConabioActivator.class);

    //database validation status (create, update, validate ...)

    static DbSchemaValidation hbm2dll = DbSchemaValidation.VALIDATE;

//    static final ICdmDataSource cdmDestination = CdmDestinations.localH2();

//    static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql_test();

    static final ICdmDataSource cdmDestination = CdmDestinations.cdm_production_mexico_rubiaceae();

    static final boolean doTaxa = true;

    static final boolean doDistributions = true;

    static final boolean doCommonNames = true;

    //feature tree uuid

    public static final UUID featureTreeUuid = UUID.fromString("d1f4ed29-9aae-4f6e-aa1e-4a3bf780e11d");

    //classification

    static final UUID classificationUuid = UUID.fromString("61968b43-e881-4043-b5c2-ba192e8f72dc");

    private static final String classificationName = "Rubiaceae Conabio";

    //check - import

    static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;

    private void doImport(ICdmDataSource cdmDestination){

        URI source = conabio_rubiaceae();

        //make Source

        MexicoConabioImportConfigurator config= MexicoConabioImportConfigurator.NewInstance(source, cdmDestination);

        config.setClassificationUuid(classificationUuid);

        config.setClassificationName(classificationName);

        config.setCheck(check);

        config.setDoTaxa(doTaxa);

        config.setDoDistributions(doDistributions);

        config.setDoCommonNames(doCommonNames);

        config.setDbSchemaValidation(hbm2dll);

        config.setSource(source);

        String fileName = source.toString();

        fileName = fileName.substring(fileName.lastIndexOf("/") + 1 );

        String message = "Start import from ("+ fileName + ") ...";

        System.out.println(message);

        logger.warn(message);

        config.setSourceReference(getSourceReference());

        config.setSecReference(getSecReference());

        CdmDefaultImport<MexicoConabioImportConfigurator> myImport = new CdmDefaultImport<>();

        myImport.invoke(config);

        if (true){

            TermTree<Feature> tree = makeFeatureNodes(myImport.getCdmAppController());

            myImport.getCdmAppController().getFeatureTreeService().saveOrUpdate(tree);

        }

        System.out.println("End import from ("+ source.toString() + ")...");

    }

    //Conabio Rubiaceae

    public static URI conabio_rubiaceae() {

        return URI.create("file:////BGBM-PESIHPC/Mexico/CONABIO-Rubiaceae.xlsx");

    }

    private Reference getSourceReference() {

        Reference result = ReferenceFactory.newDatabase();

        result.setTitleCache("CONABIO database", true);

        VerbatimTimePeriod tp = TimePeriodParser.parseStringVerbatim("2016");

        tp.setStartMonth(5);

        result.setDatePublished(tp);

        Institution inst = Institution.NewNamedInstance("CONABIO");

        result.setInstitution(inst);

        return result;

    }

    private Reference getSecReference() {

        Reference result = ReferenceFactory.newDatabase();

        result.setTitle("Rubiáceas de México");

        result.setDatePublished(TimePeriodParser.parseStringVerbatim("2016"));

        Person author = Person.NewInstance();

        author.setGivenName("Helga");

        author.setFamilyName("Ochoterena Booth");

        result.setAuthorship(author);

        result.setUuid(MexicoConabioTransformer.uuidReferenceConabio);

        return result;

    }

    private TermTree<Feature> makeFeatureNodes(ICdmRepository app){

        TermTree<Feature> result = TermTree.NewFeatureInstance(featureTreeUuid);

        result.setTitleCache("Mexico Rubiaceae Feature Tree", true);

        TermNode<Feature> root = result.getRoot();

        Feature distribution = Feature.DISTRIBUTION();

        Representation rep = Representation.NewInstance("Distribución", "Distribución", null, Language.SPANISH_CASTILIAN());

        distribution.addRepresentation(rep);

        app.getTermService().saveOrUpdate(distribution);

        root.addChild(distribution);

        Feature commonName = Feature.COMMON_NAME();

        rep = Representation.NewInstance("Nombres comunes", "Nombres comunes", null, Language.SPANISH_CASTILIAN());

        commonName.addRepresentation(rep);

        app.getTermService().saveOrUpdate(commonName);

        root.addChild(commonName);

        Feature notes = Feature.NOTES();

        rep = Representation.NewInstance("Notas", "Notas", null, Language.SPANISH_CASTILIAN());

        notes.addRepresentation(rep);

        app.getTermService().saveOrUpdate(notes);

        root.addChild(notes);

        return result;

    }

    /**

     * @param args

     */

    public static void main(String[] args) {

        MexicoBorhidiActivator borhidi = new MexicoBorhidiActivator();

        borhidi.doImport(cdmDestination);

        MexicoConabioActivator conabio = new MexicoConabioActivator();

        conabio.doImport(cdmDestination);

        System.exit(0);

    }

}