Revision 24bf3f9c
Added by Andreas Müller about 11 years ago
| .gitattributes | ||
|---|---|---|
| 1254 | 1254 |
cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/pesi/PesiSources.java -text |
| 1255 | 1255 |
cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/pesi/merging/FaunaEuErmsFindIdenticalNamesActivator.java -text |
| 1256 | 1256 |
cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/pesi/merging/FaunaEuErmsMergeActivator.java -text |
| 1257 |
cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/vibrant/IopiActivator.java -text |
|
| 1258 |
cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/vibrant/MclActivator.java -text |
|
| 1259 |
cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/vibrant/VibrantActivator.java -text |
|
| 1260 | 1257 |
cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/erms/ErmsAreaImport.java -text |
| 1261 | 1258 |
cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/erms/ErmsDrImport.java -text |
| 1262 | 1259 |
cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/erms/ErmsImageImport.java -text |
| cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/vibrant/IopiActivator.java | ||
|---|---|---|
| 1 |
/** |
|
| 2 |
* Copyright (C) 2007 EDIT |
|
| 3 |
* European Distributed Institute of Taxonomy |
|
| 4 |
* http://www.e-taxonomy.eu |
|
| 5 |
* |
|
| 6 |
* The contents of this file are subject to the Mozilla Public License Version 1.1 |
|
| 7 |
* See LICENSE.TXT at the top of this package for the full license terms. |
|
| 8 |
*/ |
|
| 9 |
|
|
| 10 |
package eu.etaxonomy.cdm.app.vibrant; |
|
| 11 |
|
|
| 12 |
import java.util.UUID; |
|
| 13 |
|
|
| 14 |
import org.apache.log4j.Logger; |
|
| 15 |
|
|
| 16 |
import eu.etaxonomy.cdm.app.common.BerlinModelSources; |
|
| 17 |
import eu.etaxonomy.cdm.app.common.CdmDestinations; |
|
| 18 |
import eu.etaxonomy.cdm.database.DatabaseTypeEnum; |
|
| 19 |
import eu.etaxonomy.cdm.database.DbSchemaValidation; |
|
| 20 |
import eu.etaxonomy.cdm.database.ICdmDataSource; |
|
| 21 |
import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator; |
|
| 22 |
import eu.etaxonomy.cdm.io.common.CdmDefaultImport; |
|
| 23 |
import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK; |
|
| 24 |
import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES; |
|
| 25 |
import eu.etaxonomy.cdm.io.common.IImportConfigurator.EDITOR; |
|
| 26 |
import eu.etaxonomy.cdm.io.common.Source; |
|
| 27 |
import eu.etaxonomy.cdm.io.pesi.out.PesiTransformer; |
|
| 28 |
import eu.etaxonomy.cdm.model.name.NomenclaturalCode; |
|
| 29 |
|
|
| 30 |
|
|
| 31 |
/** |
|
| 32 |
* TODO add the following to a wiki page: |
|
| 33 |
* HINT: If you are about to import into a mysql data base running under windows and if you wish to dump and restore the resulting data bas under another operation systen |
|
| 34 |
* you must set the mysql system variable lower_case_table_names = 0 in order to create data base with table compatible names. |
|
| 35 |
* |
|
| 36 |
* |
|
| 37 |
* @author a.mueller |
|
| 38 |
* |
|
| 39 |
*/ |
|
| 40 |
public class IopiActivator {
|
|
| 41 |
@SuppressWarnings("unused")
|
|
| 42 |
private static final Logger logger = Logger.getLogger(IopiActivator.class); |
|
| 43 |
|
|
| 44 |
//database validation status (create, update, validate ...) |
|
| 45 |
static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE; |
|
| 46 |
static final Source berlinModelSource = BerlinModelSources.iopi(); |
|
| 47 |
|
|
| 48 |
// static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql(); |
|
| 49 |
static final ICdmDataSource cdmDestination = cdm_test_local_iopi(); |
|
| 50 |
|
|
| 51 |
static final boolean useSingleClassification = false; |
|
| 52 |
static final Integer sourceSecId = null; //7000000; |
|
| 53 |
static final UUID classificationUuid = null; //UUID.fromString("aa3fbaeb-f5dc-4e75-8d60-c8f93beb7ba6");
|
|
| 54 |
|
|
| 55 |
static final UUID sourceRefUuid = UUID.fromString("df68c748-3c64-4b96-9a47-db51fb9d387e");
|
|
| 56 |
|
|
| 57 |
// set to zero for unlimited nameFacts |
|
| 58 |
static final int maximumNumberOfNameFacts = 0; |
|
| 59 |
|
|
| 60 |
static final int partitionSize = 1500; |
|
| 61 |
|
|
| 62 |
//check - import |
|
| 63 |
static final CHECK check = CHECK.CHECK_AND_IMPORT; |
|
| 64 |
|
|
| 65 |
//editor - import |
|
| 66 |
static final EDITOR editor = EDITOR.EDITOR_AS_EDITOR; |
|
| 67 |
|
|
| 68 |
//NomeclaturalCode |
|
| 69 |
static final NomenclaturalCode nomenclaturalCode = NomenclaturalCode.ICBN; |
|
| 70 |
|
|
| 71 |
//ignore null |
|
| 72 |
static final boolean ignoreNull = true; |
|
| 73 |
|
|
| 74 |
static boolean useClassification = true; |
|
| 75 |
|
|
| 76 |
|
|
| 77 |
// **************** ALL ********************* |
|
| 78 |
|
|
| 79 |
//authors |
|
| 80 |
static final boolean doAuthors = true; |
|
| 81 |
//references |
|
| 82 |
static final DO_REFERENCES doReferences = DO_REFERENCES.ALL; |
|
| 83 |
//names |
|
| 84 |
static final boolean doTaxonNames = true; |
|
| 85 |
static final boolean doRelNames = true; |
|
| 86 |
static final boolean doNameStatus = true; |
|
| 87 |
|
|
| 88 |
//taxa |
|
| 89 |
static final boolean doTaxa = true; |
|
| 90 |
static final boolean doRelTaxa = true; |
|
| 91 |
static final boolean doFacts = true; |
|
| 92 |
|
|
| 93 |
//etc. |
|
| 94 |
|
|
| 95 |
|
|
| 96 |
// **************** SELECTED ********************* |
|
| 97 |
|
|
| 98 |
// static final boolean doUser = true; |
|
| 99 |
// //authors |
|
| 100 |
// static final boolean doAuthors = false; |
|
| 101 |
// //references |
|
| 102 |
// static final DO_REFERENCES doReferences = DO_REFERENCES.NONE; |
|
| 103 |
// //names |
|
| 104 |
// static final boolean doTaxonNames = false; |
|
| 105 |
// static final boolean doRelNames = false; |
|
| 106 |
// static final boolean doNameStatus = false; |
|
| 107 |
// static final boolean doTypes = false; |
|
| 108 |
// static final boolean doNameFacts = false; |
|
| 109 |
// |
|
| 110 |
// //taxa |
|
| 111 |
// static final boolean doTaxa = false; |
|
| 112 |
// static final boolean doRelTaxa = false; |
|
| 113 |
// static final boolean doFacts = false; |
|
| 114 |
// |
|
| 115 |
// //etc. |
|
| 116 |
// static final boolean doMarker = false; |
|
| 117 |
|
|
| 118 |
|
|
| 119 |
//******** ALWAYS IGNORE ***************************** |
|
| 120 |
|
|
| 121 |
static final boolean doUser = false; |
|
| 122 |
static final boolean doOccurences = false; |
|
| 123 |
static final boolean doCommonNames = false; |
|
| 124 |
static final boolean doTypes = false; |
|
| 125 |
static final boolean doNameFacts = false; |
|
| 126 |
static final boolean doMarker = false; |
|
| 127 |
|
|
| 128 |
|
|
| 129 |
public void importIopi (Source source, ICdmDataSource destination, DbSchemaValidation hbm2dll){
|
|
| 130 |
System.out.println("Start import from BerlinModel("+ berlinModelSource.getDatabase() + ") to " + cdmDestination.getDatabase() + " ...");
|
|
| 131 |
//make BerlinModel Source |
|
| 132 |
|
|
| 133 |
BerlinModelImportConfigurator config = BerlinModelImportConfigurator.NewInstance(source, destination); |
|
| 134 |
|
|
| 135 |
config.setClassificationUuid(classificationUuid); |
|
| 136 |
config.setSourceSecId(sourceSecId); |
|
| 137 |
|
|
| 138 |
config.setNomenclaturalCode(nomenclaturalCode); |
|
| 139 |
|
|
| 140 |
config.setIgnoreNull(ignoreNull); |
|
| 141 |
config.setDoAuthors(doAuthors); |
|
| 142 |
config.setDoReferences(doReferences); |
|
| 143 |
config.setDoTaxonNames(doTaxonNames); |
|
| 144 |
config.setDoRelNames(doRelNames); |
|
| 145 |
config.setDoNameStatus(doNameStatus); |
|
| 146 |
config.setDoTypes(doTypes); |
|
| 147 |
config.setDoNameFacts(doNameFacts); |
|
| 148 |
config.setUseClassification(useClassification); |
|
| 149 |
config.setSourceRefUuid(sourceRefUuid); |
|
| 150 |
|
|
| 151 |
config.setDoTaxa(doTaxa); |
|
| 152 |
config.setDoRelTaxa(doRelTaxa); |
|
| 153 |
config.setDoFacts(doFacts); |
|
| 154 |
config.setDoOccurrence(doOccurences); |
|
| 155 |
config.setDoCommonNames(doCommonNames); |
|
| 156 |
|
|
| 157 |
config.setDoMarker(doMarker); |
|
| 158 |
config.setDoUser(doUser); |
|
| 159 |
config.setEditor(editor); |
|
| 160 |
config.setDbSchemaValidation(hbm2dll); |
|
| 161 |
|
|
| 162 |
// maximum number of name facts to import |
|
| 163 |
config.setMaximumNumberOfNameFacts(maximumNumberOfNameFacts); |
|
| 164 |
|
|
| 165 |
config.setUseSingleClassification(useSingleClassification); |
|
| 166 |
|
|
| 167 |
config.setCheck(check); |
|
| 168 |
config.setEditor(editor); |
|
| 169 |
config.setRecordsPerTransaction(partitionSize); |
|
| 170 |
|
|
| 171 |
|
|
| 172 |
// invoke import |
|
| 173 |
CdmDefaultImport<BerlinModelImportConfigurator> bmImport = new CdmDefaultImport<BerlinModelImportConfigurator>(); |
|
| 174 |
bmImport.invoke(config); |
|
| 175 |
|
|
| 176 |
System.out.println("End import from BerlinModel ("+ source.getDatabase() + ")...");
|
|
| 177 |
|
|
| 178 |
} |
|
| 179 |
|
|
| 180 |
/** |
|
| 181 |
* @param args |
|
| 182 |
*/ |
|
| 183 |
public static void main(String[] args) {
|
|
| 184 |
IopiActivator importActivator = new IopiActivator(); |
|
| 185 |
Source source = berlinModelSource; |
|
| 186 |
ICdmDataSource cdmRepository = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination; |
|
| 187 |
|
|
| 188 |
importActivator.importIopi(source, cdmRepository, hbm2dll); |
|
| 189 |
|
|
| 190 |
} |
|
| 191 |
|
|
| 192 |
public static ICdmDataSource cdm_test_local_iopi(){
|
|
| 193 |
DatabaseTypeEnum dbType = DatabaseTypeEnum.MySQL; |
|
| 194 |
String cdmServer = "127.0.0.1"; |
|
| 195 |
String cdmDB = "iopi"; |
|
| 196 |
String cdmUserName = "root"; |
|
| 197 |
return CdmDestinations.makeDestination(dbType, cdmServer, cdmDB, -1, cdmUserName, null); |
|
| 198 |
} |
|
| 199 |
|
|
| 200 |
|
|
| 201 |
} |
|
| cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/vibrant/MclActivator.java | ||
|---|---|---|
| 1 |
/** |
|
| 2 |
* Copyright (C) 2007 EDIT |
|
| 3 |
* European Distributed Institute of Taxonomy |
|
| 4 |
* http://www.e-taxonomy.eu |
|
| 5 |
* |
|
| 6 |
* The contents of this file are subject to the Mozilla Public License Version 1.1 |
|
| 7 |
* See LICENSE.TXT at the top of this package for the full license terms. |
|
| 8 |
*/ |
|
| 9 |
|
|
| 10 |
package eu.etaxonomy.cdm.app.vibrant; |
|
| 11 |
|
|
| 12 |
import java.util.UUID; |
|
| 13 |
|
|
| 14 |
import org.apache.log4j.Logger; |
|
| 15 |
|
|
| 16 |
import eu.etaxonomy.cdm.app.common.BerlinModelSources; |
|
| 17 |
import eu.etaxonomy.cdm.app.common.CdmDestinations; |
|
| 18 |
import eu.etaxonomy.cdm.database.DatabaseTypeEnum; |
|
| 19 |
import eu.etaxonomy.cdm.database.DbSchemaValidation; |
|
| 20 |
import eu.etaxonomy.cdm.database.ICdmDataSource; |
|
| 21 |
import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator; |
|
| 22 |
import eu.etaxonomy.cdm.io.common.CdmDefaultImport; |
|
| 23 |
import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK; |
|
| 24 |
import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES; |
|
| 25 |
import eu.etaxonomy.cdm.io.common.IImportConfigurator.EDITOR; |
|
| 26 |
import eu.etaxonomy.cdm.io.common.Source; |
|
| 27 |
import eu.etaxonomy.cdm.io.pesi.out.PesiTransformer; |
|
| 28 |
import eu.etaxonomy.cdm.model.name.NomenclaturalCode; |
|
| 29 |
|
|
| 30 |
|
|
| 31 |
/** |
|
| 32 |
* TODO add the following to a wiki page: |
|
| 33 |
* HINT: If you are about to import into a mysql data base running under windows and if you wish to dump and restore the resulting data bas under another operation systen |
|
| 34 |
* you must set the mysql system variable lower_case_table_names = 0 in order to create data base with table compatible names. |
|
| 35 |
* |
|
| 36 |
* |
|
| 37 |
* @author a.mueller |
|
| 38 |
* |
|
| 39 |
*/ |
|
| 40 |
public class MclActivator {
|
|
| 41 |
@SuppressWarnings("unused")
|
|
| 42 |
private static final Logger logger = Logger.getLogger(MclActivator.class); |
|
| 43 |
|
|
| 44 |
//database validation status (create, update, validate ...) |
|
| 45 |
static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE; |
|
| 46 |
static final Source berlinModelSource = BerlinModelSources.mcl(); |
|
| 47 |
|
|
| 48 |
static final ICdmDataSource cdmDestination = cdm_test_local_mcl(); |
|
| 49 |
// static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql(); |
|
| 50 |
|
|
| 51 |
static final boolean useSingleClassification = true; |
|
| 52 |
static final int sourceSecId = 1272; |
|
| 53 |
static final UUID classificationUuid = UUID.fromString("ba6efd26-5b45-4ce6-915d-4f9576e0bf0a");
|
|
| 54 |
|
|
| 55 |
static final UUID sourceRefUuid = UUID.fromString("ca8b25d6-e251-4d2b-8b45-142e1e6448f7");
|
|
| 56 |
|
|
| 57 |
// set to zero for unlimited nameFacts |
|
| 58 |
static final int maximumNumberOfNameFacts = 0; |
|
| 59 |
|
|
| 60 |
static final int partitionSize = 5000; |
|
| 61 |
|
|
| 62 |
//check - import |
|
| 63 |
static final CHECK check = CHECK.CHECK_AND_IMPORT; |
|
| 64 |
|
|
| 65 |
//editor - import |
|
| 66 |
static final EDITOR editor = EDITOR.EDITOR_AS_EDITOR; |
|
| 67 |
|
|
| 68 |
//NomeclaturalCode |
|
| 69 |
static final NomenclaturalCode nomenclaturalCode = NomenclaturalCode.ICBN; |
|
| 70 |
|
|
| 71 |
//ignore null |
|
| 72 |
static final boolean ignoreNull = true; |
|
| 73 |
|
|
| 74 |
static boolean useClassification = true; |
|
| 75 |
|
|
| 76 |
|
|
| 77 |
// **************** ALL ********************* |
|
| 78 |
|
|
| 79 |
|
|
| 80 |
//authors |
|
| 81 |
static final boolean doAuthors = true; |
|
| 82 |
//references |
|
| 83 |
static final DO_REFERENCES doReferences = DO_REFERENCES.ALL; |
|
| 84 |
//names |
|
| 85 |
static final boolean doTaxonNames = true; |
|
| 86 |
static final boolean doRelNames = true; |
|
| 87 |
static final boolean doNameStatus = true; |
|
| 88 |
|
|
| 89 |
//taxa |
|
| 90 |
static final boolean doTaxa = true; |
|
| 91 |
static final boolean doRelTaxa = true; |
|
| 92 |
static final boolean doFacts = true; |
|
| 93 |
|
|
| 94 |
|
|
| 95 |
|
|
| 96 |
// **************** SELECTED ********************* |
|
| 97 |
|
|
| 98 |
// //authors |
|
| 99 |
// static final boolean doAuthors = false; |
|
| 100 |
// //references |
|
| 101 |
// static final DO_REFERENCES doReferences = DO_REFERENCES.NONE; |
|
| 102 |
// //names |
|
| 103 |
// static final boolean doTaxonNames = false; |
|
| 104 |
// static final boolean doRelNames = false; |
|
| 105 |
// static final boolean doNameStatus = false; |
|
| 106 |
// |
|
| 107 |
// //taxa |
|
| 108 |
// static final boolean doTaxa = false; |
|
| 109 |
// static final boolean doRelTaxa = true; |
|
| 110 |
// static final boolean doFacts = false; |
|
| 111 |
|
|
| 112 |
|
|
| 113 |
|
|
| 114 |
// **********Always IGNORE:*********************************************** |
|
| 115 |
|
|
| 116 |
//etc. |
|
| 117 |
static final boolean doUser = false; |
|
| 118 |
static final boolean doTypes = false; //not available in MCL |
|
| 119 |
static final boolean doNameFacts = false; //not available in MCL |
|
| 120 |
static final boolean doOccurences = false; //not available in MCL |
|
| 121 |
static final boolean doCommonNames = false; //not available in MCL |
|
| 122 |
static final boolean doMarker = false; //not available in MCL |
|
| 123 |
|
|
| 124 |
|
|
| 125 |
public void importMcl (Source source, ICdmDataSource destination, DbSchemaValidation hbm2dll){
|
|
| 126 |
System.out.println("Start import from BerlinModel("+ berlinModelSource.getDatabase() + ") to " + cdmDestination.getDatabase() + " ...");
|
|
| 127 |
//make BerlinModel Source |
|
| 128 |
|
|
| 129 |
BerlinModelImportConfigurator config = BerlinModelImportConfigurator.NewInstance(source, destination); |
|
| 130 |
|
|
| 131 |
config.setClassificationUuid(classificationUuid); |
|
| 132 |
config.setSourceSecId(sourceSecId); |
|
| 133 |
|
|
| 134 |
config.setNomenclaturalCode(nomenclaturalCode); |
|
| 135 |
|
|
| 136 |
config.setIgnoreNull(ignoreNull); |
|
| 137 |
config.setDoAuthors(doAuthors); |
|
| 138 |
config.setDoReferences(doReferences); |
|
| 139 |
config.setDoTaxonNames(doTaxonNames); |
|
| 140 |
config.setDoRelNames(doRelNames); |
|
| 141 |
config.setDoNameStatus(doNameStatus); |
|
| 142 |
config.setDoTypes(doTypes); |
|
| 143 |
config.setDoNameFacts(doNameFacts); |
|
| 144 |
config.setUseClassification(useClassification); |
|
| 145 |
config.setSourceRefUuid(sourceRefUuid); |
|
| 146 |
|
|
| 147 |
config.setDoTaxa(doTaxa); |
|
| 148 |
config.setDoRelTaxa(doRelTaxa); |
|
| 149 |
config.setDoFacts(doFacts); |
|
| 150 |
config.setDoOccurrence(doOccurences); |
|
| 151 |
config.setDoCommonNames(doCommonNames); |
|
| 152 |
|
|
| 153 |
config.setDoMarker(doMarker); |
|
| 154 |
config.setDoUser(doUser); |
|
| 155 |
config.setEditor(editor); |
|
| 156 |
config.setDbSchemaValidation(hbm2dll); |
|
| 157 |
|
|
| 158 |
// maximum number of name facts to import |
|
| 159 |
config.setMaximumNumberOfNameFacts(maximumNumberOfNameFacts); |
|
| 160 |
|
|
| 161 |
config.setUseSingleClassification(useSingleClassification); |
|
| 162 |
|
|
| 163 |
|
|
| 164 |
config.setCheck(check); |
|
| 165 |
config.setEditor(editor); |
|
| 166 |
config.setRecordsPerTransaction(partitionSize); |
|
| 167 |
|
|
| 168 |
|
|
| 169 |
// invoke import |
|
| 170 |
CdmDefaultImport<BerlinModelImportConfigurator> bmImport = new CdmDefaultImport<BerlinModelImportConfigurator>(); |
|
| 171 |
bmImport.invoke(config); |
|
| 172 |
|
|
| 173 |
System.out.println("End import from BerlinModel ("+ source.getDatabase() + ")...");
|
|
| 174 |
|
|
| 175 |
} |
|
| 176 |
|
|
| 177 |
/** |
|
| 178 |
* @param args |
|
| 179 |
*/ |
|
| 180 |
public static void main(String[] args) {
|
|
| 181 |
MclActivator importActivator = new MclActivator(); |
|
| 182 |
Source source = berlinModelSource; |
|
| 183 |
ICdmDataSource cdmRepository = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination; |
|
| 184 |
|
|
| 185 |
importActivator.importMcl(source, cdmRepository, hbm2dll); |
|
| 186 |
|
|
| 187 |
} |
|
| 188 |
|
|
| 189 |
public static ICdmDataSource cdm_test_local_mcl(){
|
|
| 190 |
DatabaseTypeEnum dbType = DatabaseTypeEnum.MySQL; |
|
| 191 |
String cdmServer = "127.0.0.1"; |
|
| 192 |
String cdmDB = "mcl"; |
|
| 193 |
String cdmUserName = "root"; |
|
| 194 |
return CdmDestinations.makeDestination(dbType, cdmServer, cdmDB, -1, cdmUserName, null); |
|
| 195 |
} |
|
| 196 |
|
|
| 197 |
} |
|
| cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/vibrant/VibrantActivator.java | ||
|---|---|---|
| 1 |
/** |
|
| 2 |
* Copyright (C) 2007 EDIT |
|
| 3 |
* European Distributed Institute of Taxonomy |
|
| 4 |
* http://www.e-taxonomy.eu |
|
| 5 |
* |
|
| 6 |
* The contents of this file are subject to the Mozilla Public License Version 1.1 |
|
| 7 |
* See LICENSE.TXT at the top of this package for the full license terms. |
|
| 8 |
*/ |
|
| 9 |
|
|
| 10 |
package eu.etaxonomy.cdm.app.vibrant; |
|
| 11 |
|
|
| 12 |
import java.util.UUID; |
|
| 13 |
|
|
| 14 |
import org.apache.log4j.Logger; |
|
| 15 |
|
|
| 16 |
import eu.etaxonomy.cdm.app.common.BerlinModelSources; |
|
| 17 |
import eu.etaxonomy.cdm.app.common.CdmDestinations; |
|
| 18 |
import eu.etaxonomy.cdm.app.pesi.EuroMedActivator; |
|
| 19 |
import eu.etaxonomy.cdm.database.DatabaseTypeEnum; |
|
| 20 |
import eu.etaxonomy.cdm.database.DbSchemaValidation; |
|
| 21 |
import eu.etaxonomy.cdm.database.ICdmDataSource; |
|
| 22 |
import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator; |
|
| 23 |
import eu.etaxonomy.cdm.io.common.CdmDefaultImport; |
|
| 24 |
import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK; |
|
| 25 |
import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES; |
|
| 26 |
import eu.etaxonomy.cdm.io.common.IImportConfigurator.EDITOR; |
|
| 27 |
import eu.etaxonomy.cdm.io.common.Source; |
|
| 28 |
import eu.etaxonomy.cdm.io.pesi.out.PesiTransformer; |
|
| 29 |
import eu.etaxonomy.cdm.model.name.NomenclaturalCode; |
|
| 30 |
|
|
| 31 |
|
|
| 32 |
/** |
|
| 33 |
* TODO add the following to a wiki page: |
|
| 34 |
* HINT: If you are about to import into a mysql data base running under windows and if you wish to dump and restore the resulting data bas under another operation systen |
|
| 35 |
* you must set the mysql system variable lower_case_table_names = 0 in order to create data base with table compatible names. |
|
| 36 |
* |
|
| 37 |
* |
|
| 38 |
* @author a.mueller |
|
| 39 |
* |
|
| 40 |
*/ |
|
| 41 |
public class VibrantActivator {
|
|
| 42 |
@SuppressWarnings("unused")
|
|
| 43 |
private static final Logger logger = Logger.getLogger(VibrantActivator.class); |
|
| 44 |
|
|
| 45 |
//database validation status (create, update, validate ...) |
|
| 46 |
static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE; |
|
| 47 |
static final Source iopiSource = BerlinModelSources.iopi(); |
|
| 48 |
static final Source mclSource = BerlinModelSources.mcl(); |
|
| 49 |
static final Source emSource = BerlinModelSources.euroMed_local(); |
|
| 50 |
|
|
| 51 |
// static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql(); |
|
| 52 |
static final ICdmDataSource cdmDestination = cdm_test_local_vibrant(); |
|
| 53 |
|
|
| 54 |
static final boolean doMcl = true; |
|
| 55 |
static final boolean doEuroMed = false; |
|
| 56 |
static final boolean doIopi = true; |
|
| 57 |
|
|
| 58 |
|
|
| 59 |
/** |
|
| 60 |
* @param args |
|
| 61 |
*/ |
|
| 62 |
public static void main(String[] args) {
|
|
| 63 |
ICdmDataSource cdmRepository = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination; |
|
| 64 |
|
|
| 65 |
if (doMcl){
|
|
| 66 |
MclActivator mclActivator = new MclActivator(); |
|
| 67 |
mclActivator.importMcl(mclSource, cdmRepository, hbm2dll); |
|
| 68 |
hbm2dll = DbSchemaValidation.NONE; |
|
| 69 |
} |
|
| 70 |
|
|
| 71 |
if (doEuroMed){
|
|
| 72 |
EuroMedActivator emActivator = new EuroMedActivator(); |
|
| 73 |
emActivator.importEm2CDM(emSource, cdmRepository, hbm2dll); |
|
| 74 |
hbm2dll = DbSchemaValidation.NONE; |
|
| 75 |
} |
|
| 76 |
|
|
| 77 |
if (doIopi){
|
|
| 78 |
IopiActivator iopiActivator = new IopiActivator(); |
|
| 79 |
iopiActivator.importIopi(iopiSource, cdmRepository, hbm2dll); |
|
| 80 |
hbm2dll = DbSchemaValidation.NONE; |
|
| 81 |
} |
|
| 82 |
|
|
| 83 |
} |
|
| 84 |
|
|
| 85 |
public static ICdmDataSource cdm_test_local_vibrant(){
|
|
| 86 |
DatabaseTypeEnum dbType = DatabaseTypeEnum.MySQL; |
|
| 87 |
String cdmServer = "127.0.0.1"; |
|
| 88 |
String cdmDB = "vibrant"; |
|
| 89 |
String cdmUserName = "root"; |
|
| 90 |
return CdmDestinations.makeDestination(dbType, cdmServer, cdmDB, -1, cdmUserName, null); |
|
| 91 |
} |
|
| 92 |
|
|
| 93 |
} |
|
Also available in: Unified diff
moved vibrant to app-import