EDIT

/**

* Copyright (C) 2007 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.app.berlinModelImport;

import java.lang.reflect.Method;

import java.util.UUID;

import org.apache.log4j.Logger;

import eu.etaxonomy.cdm.app.common.CdmDestinations;

import eu.etaxonomy.cdm.database.DbSchemaValidation;

import eu.etaxonomy.cdm.database.ICdmDataSource;

import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator;

import eu.etaxonomy.cdm.io.common.CdmDefaultImport;

import eu.etaxonomy.cdm.io.common.IImportConfigurator;

import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;

import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;

import eu.etaxonomy.cdm.io.common.Source;

import eu.etaxonomy.cdm.model.name.NomenclaturalCode;

import eu.etaxonomy.cdm.model.name.NonViralName;

/**

 * TODO add the following to a wiki page:

 * HINT: If you are about to import into a mysql data base running under windows and if you wish to dump and restore the resulting data bas under another operation systen

 * you must set the mysql system variable lower_case_table_names = 0 in order to create data base with table compatible names.

 *

 *

 * @author a.mueller

 *

 */

public class SalvadorActivator {

	private static final Logger logger = Logger.getLogger(SalvadorActivator.class);

	//database validation status (create, update, validate ...)

	static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;

	static final Source berlinModelSource = BerlinModelSources.El_Salvador();

	static final ICdmDataSource cdmDestination = CdmDestinations.localH2();

//	static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql_test();

	static final UUID treeUuid = UUID.fromString("b010c84d-6049-45f4-9f13-c065101eaa26");

	static final UUID secUuid = UUID.fromString("d03ef02a-f226-4cb1-bdb4-f6c154f08a34");

	static final int sourceSecId = 7331;

	static final UUID featureTreeUuid = UUID.fromString("ae9615b8-bc60-4ed0-ad96-897f9226d568");

	static final Object[] featureKeyList = new Integer[]{302, 303, 306, 307, 309, 310, 311, 312, 350, 1500, 1800, 1900, 1950, 1980, 2000, 10299};

	static boolean isIgnore0AuthorTeam = true;  //special case for Salvador.

	static boolean doExport = false;

	static boolean useClassification = true;

	//check - import

	static final CHECK check = CHECK.CHECK_AND_IMPORT;

	static final IImportConfigurator.EDITOR editor = IImportConfigurator.EDITOR.EDITOR_AS_EDITOR;

	//NomenclaturalCode

	static final NomenclaturalCode nomenclaturalCode  = NomenclaturalCode.ICNAFP;

	//ignore null

	static final boolean ignoreNull = true;

// ****************** ALL *****************************************

	//authors

	static final boolean doAuthors = true;

	//references

	static final DO_REFERENCES doReferences =  DO_REFERENCES.ALL;

	//names

	static final boolean doTaxonNames = true;

	static final boolean doRelNames = true;

	static final boolean doNameStatus = true;

	static final boolean doTypes = false;  //Types do not exist in El_Salvador DB

	static final boolean doNameFacts = false;  //Name Facts do not exist in El_Salvador DB

	//taxa

	static final boolean doTaxa = true;

	static final boolean doRelTaxa = true;

	static final boolean doFacts = true;

	static final boolean doOccurences = false; //Occurrences do not exist in El_Salvador DB

	static final boolean doCommonNames = false; //CommonNames do not exist in Salvador DB

	//etc.

	static final boolean doMarker = true;

	static final boolean doUser = true;

// ************************ NONE **************************************** //

//	//authors

//	static final boolean doAuthors = false;

//	//references

//	static final DO_REFERENCES doReferences =  DO_REFERENCES.CONCEPT_REFERENCES;

//	//names

//	static final boolean doTaxonNames = false;

//	static final boolean doRelNames = false;

//	static final boolean doNameStatus = false;

//	static final boolean doTypes = false;

//	static final boolean doNameFacts = false;

//

//	//taxa

//	static final boolean doTaxa = true;

//	static final boolean doRelTaxa = true;

//	static final boolean doFacts = false;

//	static final boolean doOccurences = false;

//

//	//etc.

//	static final boolean doMarker = false;

//	static final boolean doUser = false;

	public boolean doImport(ICdmDataSource destination){

		System.out.println("Start import from BerlinModel("+ berlinModelSource.getDatabase() + ") ...");

		//make BerlinModel Source

		Source source = berlinModelSource;

		BerlinModelImportConfigurator config = BerlinModelImportConfigurator.NewInstance(source,  destination);

		config.setClassificationUuid(treeUuid);

		config.setSecUuid(secUuid);

		config.setSourceSecId(sourceSecId);

		config.setNomenclaturalCode(nomenclaturalCode);

		config.setIgnoreNull(ignoreNull);

		config.setDoAuthors(doAuthors);

		config.setDoReferences(doReferences);

		config.setDoTaxonNames(doTaxonNames);

		config.setDoRelNames(doRelNames);

		config.setDoNameStatus(doNameStatus);

		config.setDoTypes(doTypes);

		config.setDoNameFacts(doNameFacts);

		config.setDoTaxa(doTaxa);

		config.setDoRelTaxa(doRelTaxa);

		config.setDoFacts(doFacts);

		config.setDoOccurrence(doOccurences);

		config.setDoCommonNames(doCommonNames);

		config.setDoMarker(doMarker);

		config.setDoUser(doUser);

		config.setDbSchemaValidation(hbm2dll);

		config.setCheck(check);

		config.setEditor(editor);

		config.setIgnore0AuthorTeam(isIgnore0AuthorTeam);

		config.setUseClassification(useClassification);

		config.setNamerelationshipTypeMethod(getHandleNameRelationshipTypeMethod());

		config.setUserTransformationMethod(getTransformUsernameMethod());

		// invoke import

		CdmDefaultImport<BerlinModelImportConfigurator> bmImport = new CdmDefaultImport<BerlinModelImportConfigurator>();

		boolean result = bmImport.invoke(config);

		System.out.println("End import from BerlinModel ("+ source.getDatabase() + ")...");

		return result;

	}

	/**

	 * @param args

	 */

	public static void main(String[] args) {

		SalvadorActivator activator = new SalvadorActivator();

		ICdmDataSource destination = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination;

		activator.doImport(destination);

		if (doExport == true){

			SalvadorExport export = new SalvadorExport();

			export.doExport(destination);

		}

	}

	private Method getHandleNameRelationshipTypeMethod(){

		String methodName = "handleNameRelationshipType";

		try {

			Method method = this.getClass().getDeclaredMethod(methodName, Integer.class, NonViralName.class, NonViralName.class);

			method.setAccessible(true);

			return method;

		} catch (Exception e) {

			logger.error("Problem creating Method: " + methodName);

			return null;

		}

	}

	//used by BerlinModelImportConfigurator

	@SuppressWarnings("unused")

	private static boolean handleNameRelationshipType(Integer relQualifierFk, NonViralName nameTo, NonViralName nameFrom){

		if (relQualifierFk == 72){

			nameTo.getHomotypicalGroup().merge(nameFrom.getHomotypicalGroup());

			return true;

		}

		return false;

	}

	private Method getTransformUsernameMethod(){

		String methodName = "transformUsername";

		try {

			Method method = this.getClass().getDeclaredMethod(methodName, String.class);

			method.setAccessible(true);

			return method;

		} catch (Exception e) {

			logger.error("Problem creating Method: " + methodName);

			return null;

		}

	}

	//used by BerlinModelImportConfigurator

	@SuppressWarnings("unused")

	private static String transformUsername(String nameToBeTransformed){

		if (nameToBeTransformed == null){

			return null;

		}else if ("W.G.Berendsohn".equals(nameToBeTransformed)){

			return "wgb";

		}else if(nameToBeTransformed.startsWith("fs") || nameToBeTransformed.equals("BGBM\\fs")){

			return "Frank Specht";

		}

		return nameToBeTransformed;

	}

}