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Revision 22689a70

Added by Andreas Müller almost 2 years ago

ref #10092 adapt FloreGabonActivator import largest volumes first and exclude feature tree and some logging issues

View differences:

cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/EfloraActivatorBase.java
121 121 
	protected void executeVolume(URI source, boolean include) {
122 122 
		if (include){
123 123 
			System.out.println("\nStart import from ("+ source.toString() + ") ...");
124 
			logger.warn("start");
124 125 
			config.setSource(source);
125 126 
			myImport.invoke(config);
126 127 
			System.out.println("End import from ("+ source.toString() + ")...");
cdm-eflora/src/main/java/eu/etaxonomy/cdm/app/eflora/FloreGabonActivator.java
34 34 
 * @since 20.06.2008
35 35 
 */
36 36 
public class FloreGabonActivator extends EfloraActivatorBase {
37 

  		




  37
  38
  
    
	private static final Logger logger = Logger.getLogger(FloreGabonActivator.class);


  		




  38
  39
  
    

  		




  39
  40
  
    
	//database validation status (create, update, validate ...)


  		




  40
  
  
    
	static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;


  		




  
  41
  
    
	static DbSchemaValidation hbm2dll = DbSchemaValidation.VALIDATE;


  		




  41
  42
  
    
//	static final URI source = EfloraSources.fdg_sample();


  		




  42
  
  
    
	static final URI fdg1 = EfloraSources.fdg_1();


  		




  43
  
  
    
	static final URI fdg2 = EfloraSources.fdg_2();


  		




  44
  
  
    
	static final URI fdg3 = EfloraSources.fdg_3();


  		




  45
  
  
    
	static final URI fdg4 = EfloraSources.fdg_4();


  		




  46
  
  
    
	static final URI fdg5 = EfloraSources.fdg_5();


  		




  47
  
  
    
	static final URI fdg5bis = EfloraSources.fdg_5bis();


  		




  48
  
  
    
	static final URI fdg6 = EfloraSources.fdg_6();


  		




  49
  
  
    
	static final URI fdg7 = EfloraSources.fdg_7();


  		




  50
  
  
    
	static final URI fdg8 = EfloraSources.fdg_8();


  		




  51
  
  
    
	static final URI fdg9 = EfloraSources.fdg_9();


  		




  52
  
  
    
	static final URI fdg10 = EfloraSources.fdg_10();


  		




  53
  
  
    
	static final URI fdg11 = EfloraSources.fdg_11();


  		




  54
  
  
    
	static final URI fdg12_17 = EfloraSources.fdg_12_17();


  		




  55
  
  
    
	static final URI fdg13 = EfloraSources.fdg_13();


  		




  56
  
  
    
	static final URI fdg14 = EfloraSources.fdg_14();


  		




  57
  
  
    
	static final URI fdg15 = EfloraSources.fdg_15();


  		




  58
  
  
    
	static final URI fdg16 = EfloraSources.fdg_16();


  		




  59
  
  
    
	static final URI fdg18 = EfloraSources.fdg_18();


  		




  60
  
  
    
	static final URI fdg19 = EfloraSources.fdg_19();


  		




  61
  
  
    
	static final URI fdg20 = EfloraSources.fdg_20();


  		




  62
  
  
    
	static final URI fdg21 = EfloraSources.fdg_21();


  		




  63
  
  
    
	static final URI fdg22 = EfloraSources.fdg_22();


  		




  64
  
  
    
	static final URI fdg23 = EfloraSources.fdg_23();


  		




  65
  
  
    
	static final URI fdg24 = EfloraSources.fdg_24();


  		




  66
  
  
    
	static final URI fdg25 = EfloraSources.fdg_25();


  		




  67
  
  
    
	static final URI fdg26 = EfloraSources.fdg_26();


  		




  68
  
  
    
	static final URI fdg27 = EfloraSources.fdg_27();


  		




  69
  
  
    
	static final URI fdg28 = EfloraSources.fdg_28();


  		




  70
  
  
    
	static final URI fdg29 = EfloraSources.fdg_29();


  		




  71
  
  
    
	static final URI fdg30 = EfloraSources.fdg_30();


  		




  72
  
  
    
	static final URI fdg31 = EfloraSources.fdg_31();


  		




  73
  
  
    
	static final URI fdg32 = EfloraSources.fdg_32();


  		




  74
  
  
    
	static final URI fdg33 = EfloraSources.fdg_33();


  		




  75
  
  
    
	static final URI fdg34 = EfloraSources.fdg_34();


  		




  76
  
  
    
	static final URI fdg35 = EfloraSources.fdg_35();


  		




  77
  
  
    

  		




  78
  
  
    
//	static final URI fdg36 = EfloraSources.fdg_36();


  		




  79
  
  
    
//	static final URI fdg37 = EfloraSources.fdg_37();


  		




  80
  
  
    
	static final URI fdg36_37 = EfloraSources.fdg_36_37();


  		




  81
  
  
    

  		




  82
  
  
    
	static final URI fdg38 = EfloraSources.fdg_38();


  		




  83
  
  
    
	static final URI fdg39 = EfloraSources.fdg_39();


  		




  84
  
  
    
	static final URI fdg40 = EfloraSources.fdg_40();


  		




  85
  
  
    
	static final URI fdg41 = EfloraSources.fdg_41();


  		




  86
  
  
    
	static final URI fdg42 = EfloraSources.fdg_42();


  		




  87
  
  
    
	static final URI fdg43 = EfloraSources.fdg_43();


  		




  88
  
  
    
	static final URI fdg44 = EfloraSources.fdg_44();


  		




  89
  
  
    
	static final URI fdg45 = EfloraSources.fdg_45();


  		




  90
  
  
    

  		




  91
  
  
    
//	static final ICdmDataSource cdmDestination = CdmDestinations.cdm_flore_gabon_preview();


  		




  
  43
  
    

  		




  
  44
  
    
	static final ICdmDataSource cdmDestination = CdmDestinations.cdm_flore_gabon_preview();


  		




  92
  45
  
    
//	static final ICdmDataSource cdmDestination = CdmDestinations.cdm_flore_gabon_production();


  		




  93
  
  
    
	static final ICdmDataSource cdmDestination = CdmDestinations.localH2();


  		




  
  46
  
    
//	static final ICdmDataSource cdmDestination = CdmDestinations.localH2();


  		




  94
  47
  
    
//	static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql();


  		




  95
  48
  
    

  		




  96
  49
  
    
	//feature tree uuid


  		




  ......




  117
  70
  
    
	//if true, use inverse include information


  		




  118
  71
  
    
	private boolean inverseInclude = true;


  		




  119
  72
  
    

  		




  
  73
  
    
	private boolean includeFdg12_17 = true;  //2236  1h17  803t (Rubiaceae)


  		




  
  74
  
    
	private boolean includeFdg36_37 = true;  //2022  1h8   1627t(824)


  		




  
  75
  
    
    private boolean includeFdg29 = false;     //1442  //transient (nach 24min)


  		




  
  76
  
    
    private boolean includeFdg16 = true;     //1355


  		




  
  77
  
    
    private boolean includeFdg26 = true;     //1290


  		




  
  78
  
    
    private boolean includeFdg15 = true;  //transient  //1228


  		




  
  79
  
    
    private boolean includeFdg44 = true;  //1176


  		




  
  80
  
    
    private boolean includeFdg20 = true;  //1045


  		




  
  81
  
    

  		




  
  82
  
    
    private boolean includeFdg13 = true;  //transient object


  		




  
  83
  
    
    private boolean includeFdg5 = true;


  		




  
  84
  
    
    private boolean includeFdg31 = true;


  		




  
  85
  
    
    private boolean includeFdg23 = true;


  		




  
  86
  
    
    private boolean includeFdg24 = true;


  		




  
  87
  
    
    private boolean includeFdg32 = true;


  		




  
  88
  
    
    private boolean includeFdg8 = true;


  		




  
  89
  
    

  		




  120
  90
  
    
	private boolean includeFdg1 = true;


  		




  121
  91
  
    
	private boolean includeFdg2 = true;


  		




  122
  92
  
    
	private boolean includeFdg3 = true;


  		




  123
  93
  
    
	private boolean includeFdg4 = true;


  		




  124
  
  
    
	private boolean includeFdg5 = true;


  		




  125
  94
  
    
	private boolean includeFdg5bis = true;


  		




  126
  95
  
    
	private boolean includeFdg6 = true;


  		




  127
  96
  
    
	private boolean includeFdg7 = true;


  		




  128
  
  
    
	private boolean includeFdg8 = true;


  		




  129
  97
  
    
	private boolean includeFdg9 = true;


  		




  130
  98
  
    
	private boolean includeFdg10 = true;


  		




  131
  99
  
    
	private boolean includeFdg11 = true;


  		




  132
  
  
    
	private boolean includeFdg12_17 = true;


  		




  133
  
  
    
	private boolean includeFdg13 = true;


  		




  
  100
  
    

  		




  134
  101
  
    
	private boolean includeFdg14 = true;


  		




  135
  
  
    
	private boolean includeFdg15 = true;


  		




  136
  
  
    
	private boolean includeFdg16 = true;


  		




  
  102
  
    

  		




  137
  103
  
    
	private boolean includeFdg18 = true;


  		




  138
  104
  
    
	private boolean includeFdg19 = true;


  		




  139
  
  
    
	private boolean includeFdg20 = true;


  		




  140
  105
  
    
	private boolean includeFdg21 = true;


  		




  141
  106
  
    
	private boolean includeFdg22 = true;


  		




  142
  
  
    

  		




  143
  
  
    
	private boolean includeFdg23 = false;


  		




  144
  
  
    
	private boolean includeFdg24 = true;


  		




  145
  107
  
    
	private boolean includeFdg25 = true;


  		




  146
  
  
    
	private boolean includeFdg26 = true;


  		




  147
  108
  
    

  		




  148
  109
  
    
	private boolean includeFdg27 = true;


  		




  149
  110
  
    
	private boolean includeFdg28 = true;


  		




  150
  111
  
    

  		




  151
  
  
    
	private boolean includeFdg29 = true;


  		




  152
  
  
    

  		




  153
  112
  
    
	private boolean includeFdg30 = true;


  		




  154
  113
  
    

  		




  155
  
  
    
	private boolean includeFdg31 = true;


  		




  156
  
  
    
	private boolean includeFdg32 = true;


  		




  157
  114
  
    
	private boolean includeFdg33 = true;


  		




  158
  115
  
    

  		




  159
  116
  
    
	private boolean includeFdg34 = true;


  		




  160
  117
  
    
	private boolean includeFdg35 = true;


  		




  161
  
  
    

  		




  162
  
  
    
//	private boolean includeFdg36 = true;


  		




  163
  
  
    
//	private boolean includeFdg37 = true;


  		




  164
  
  
    
	private boolean includeFdg36_37 = true;


  		




  165
  118
  
    
	private boolean includeFdg38 = true;


  		




  166
  119
  
    
	private boolean includeFdg39 = true;


  		




  167
  120
  
    
	private boolean includeFdg40 = true;


  		




  168
  121
  
    
	private boolean includeFdg41 = true;


  		




  169
  122
  
    
	private boolean includeFdg42 = true;


  		




  170
  123
  
    
	private boolean includeFdg43 = true;


  		




  171
  
  
    
	private boolean includeFdg44 = true;


  		




  172
  124
  
    
	private boolean includeFdg45 = true;


  		




  173
  125
  
    

  		




  
  126
  
    
	   static final URI fdg1 = EfloraSources.fdg_1();


  		




  
  127
  
    
	    static final URI fdg2 = EfloraSources.fdg_2();


  		




  
  128
  
    
	    static final URI fdg3 = EfloraSources.fdg_3();


  		




  
  129
  
    
	    static final URI fdg4 = EfloraSources.fdg_4();


  		




  
  130
  
    
	    static final URI fdg5 = EfloraSources.fdg_5();


  		




  
  131
  
    
	    static final URI fdg5bis = EfloraSources.fdg_5bis();


  		




  
  132
  
    
	    static final URI fdg6 = EfloraSources.fdg_6();


  		




  
  133
  
    
	    static final URI fdg7 = EfloraSources.fdg_7();


  		




  
  134
  
    
	    static final URI fdg8 = EfloraSources.fdg_8();


  		




  
  135
  
    
	    static final URI fdg9 = EfloraSources.fdg_9();


  		




  
  136
  
    
	    static final URI fdg10 = EfloraSources.fdg_10();


  		




  
  137
  
    
	    static final URI fdg11 = EfloraSources.fdg_11();


  		




  
  138
  
    
	    static final URI fdg12_17 = EfloraSources.fdg_12_17();


  		




  
  139
  
    
	    static final URI fdg13 = EfloraSources.fdg_13();


  		




  
  140
  
    
	    static final URI fdg14 = EfloraSources.fdg_14();


  		




  
  141
  
    
	    static final URI fdg15 = EfloraSources.fdg_15();


  		




  
  142
  
    
	    static final URI fdg16 = EfloraSources.fdg_16();


  		




  
  143
  
    
	    static final URI fdg18 = EfloraSources.fdg_18();


  		




  
  144
  
    
	    static final URI fdg19 = EfloraSources.fdg_19();


  		




  
  145
  
    
	    static final URI fdg20 = EfloraSources.fdg_20();


  		




  
  146
  
    
	    static final URI fdg21 = EfloraSources.fdg_21();


  		




  
  147
  
    
	    static final URI fdg22 = EfloraSources.fdg_22();


  		




  
  148
  
    
	    static final URI fdg23 = EfloraSources.fdg_23();


  		




  
  149
  
    
	    static final URI fdg24 = EfloraSources.fdg_24();


  		




  
  150
  
    
	    static final URI fdg25 = EfloraSources.fdg_25();


  		




  
  151
  
    
	    static final URI fdg26 = EfloraSources.fdg_26();


  		




  
  152
  
    
	    static final URI fdg27 = EfloraSources.fdg_27();


  		




  
  153
  
    
	    static final URI fdg28 = EfloraSources.fdg_28();


  		




  
  154
  
    
	    static final URI fdg29 = EfloraSources.fdg_29();


  		




  
  155
  
    
	    static final URI fdg30 = EfloraSources.fdg_30();


  		




  
  156
  
    
	    static final URI fdg31 = EfloraSources.fdg_31();


  		




  
  157
  
    
	    static final URI fdg32 = EfloraSources.fdg_32();


  		




  
  158
  
    
	    static final URI fdg33 = EfloraSources.fdg_33();


  		




  
  159
  
    
	    static final URI fdg34 = EfloraSources.fdg_34();


  		




  
  160
  
    
	    static final URI fdg35 = EfloraSources.fdg_35();


  		




  
  161
  
    

  		




  
  162
  
    
	//  static final URI fdg36 = EfloraSources.fdg_36();


  		




  
  163
  
    
	//  static final URI fdg37 = EfloraSources.fdg_37();


  		




  
  164
  
    
	    static final URI fdg36_37 = EfloraSources.fdg_36_37();


  		




  
  165
  
    

  		




  
  166
  
    
	    static final URI fdg38 = EfloraSources.fdg_38();


  		




  
  167
  
    
	    static final URI fdg39 = EfloraSources.fdg_39();


  		




  
  168
  
    
	    static final URI fdg40 = EfloraSources.fdg_40();


  		




  
  169
  
    
	    static final URI fdg41 = EfloraSources.fdg_41();


  		




  
  170
  
    
	    static final URI fdg42 = EfloraSources.fdg_42();


  		




  
  171
  
    
	    static final URI fdg43 = EfloraSources.fdg_43();


  		




  
  172
  
    
	    static final URI fdg44 = EfloraSources.fdg_44();


  		




  
  173
  
    
	    static final URI fdg45 = EfloraSources.fdg_45();


  		




  
  174
  
    

  		




  
  175
  
    

  		




  174
  176
  
    
// **************** NO CHANGE **********************************************/


  		




  175
  177
  
    

  		




  176
  178
  
    
	private void doImport(ICdmDataSource cdmDestination){


  		




  ......




  277
  279
  
    
		//Vol35


  		




  278
  280
  
    
		executeVolume(fdg35, includeFdg35 ^ inverseInclude);


  		




  279
  281
  
    

  		




  280
  
  
    
//		//Vol36


  		




  281
  
  
    
//		executeVolume(fdg36, includeFdg36 ^ inverseInclude);


  		




  282
  
  
    
//


  		




  283
  
  
    
//		//Vol37


  		




  284
  
  
    
//		executeVolume(fdg37, includeFdg37 ^ inverseInclude);


  		




  285
  
  
    

  		




  286
  282
  
    
		//Vol 36_37


  		




  287
  283
  
    
		executeVolume(fdg36_37, includeFdg36_37 ^ inverseInclude);


  		




  288
  284
  
    

  		




  ......




  310
  306
  
    
		//Vol45


  		




  311
  307
  
    
		executeVolume(fdg45, includeFdg45 ^ inverseInclude);


  		




  312
  308
  
    

  		




  313
  
  
    
		TermTree<Feature> tree = makeFeatureNode(myImport.getCdmAppController().getTermService());


  		




  314
  
  
    
		myImport.getCdmAppController().getTermTreeService().saveOrUpdate(tree);


  		




  315
  
  
    

  		




  316
  
  
    
		makeAutomatedFeatureTree(myImport.getCdmAppController(), config.getState(),


  		




  317
  
  
    
				featureTreeUuid, featureTreeTitle);


  		




  
  309
  
    
//		TermTree<Feature> tree = makeFeatureNode(myImport.getCdmAppController().getTermService());


  		




  
  310
  
    
//		myImport.getCdmAppController().getTermTreeService().saveOrUpdate(tree);


  		




  
  311
  
    
//


  		




  
  312
  
    
//		makeAutomatedFeatureTree(myImport.getCdmAppController(), config.getState(),


  		




  
  313
  
    
//				featureTreeUuid, featureTreeTitle);


  		




  318
  314
  
    

  		




  319
  315
  
    
		//check keys


  		




  320
  316
  
    
		if (doPrintKeys){


  		




  ......




  551
  547
  
    

  		




  552
  548
  
    
	public static void main(String[] args) {


  		




  553
  549
  
    
		FloreGabonActivator me = new FloreGabonActivator();


  		




  554
  
  
    
		me.doImport(cdmDestination);


  		




  
  550
  
    
		try {


  		




  
  551
  
    
            me.doImport(cdmDestination);


  		




  
  552
  
    
        } catch (Exception e) {


  		




  
  553
  
    
            logger.warn("Uncatched exception: " + e.getMessage());


  		




  
  554
  
    
            e.printStackTrace();


  		




  
  555
  
    
        }


  		




  
  556
  
    
		logger.warn("Finish");


  		




  
  557
  
    
		System.exit(0);


  		




  555
  558
  
    
	}


  		




  556
  559
  
    
}


  		












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