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Revision 1aebda23

Added by Andreas Müller over 11 years ago

update vibrant activators

View differences:

.gitattributes
1253 1253 
cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/pesi/merging/FaunaEuErmsMergeActivator.java -text
1254 1254 
cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/vibrant/IopiActivator.java -text
1255 1255 
cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/vibrant/MclActivator.java -text
1256 
cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/vibrant/VibrantActivator.java -text
1256 1257 
cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/erms/ErmsAreaImport.java -text
1257 1258 
cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/erms/ErmsDrImport.java -text
1258 1259 
cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/erms/ErmsImageImport.java -text
cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/pesi/EuroMedActivator.java
52 52
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//	static final ICdmDataSource cdmDestination = CdmDestinations.cdm_pesi_euroMed();
54 54 
//	static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql();
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	static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql_test();
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	static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql();
56 56
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	static final boolean includePesiExport = false;
58 58
......
152 152 
//	static final boolean doMarker = false;
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	public void importEm2CDM (Source source, ICdmDataSource destination){
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	public void importEm2CDM (Source source, ICdmDataSource destination, DbSchemaValidation hbm2dll){
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		System.out.println("Start import from BerlinModel("+ berlinModelSource.getDatabase() + ") to " + cdmDestination.getDatabase() + " ...");
157 157 
		//make BerlinModel Source
158 158
......
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		Source source = berlinModelSource;
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		ICdmDataSource cdmRepository = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination;
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		importActivator.importEm2CDM(source, cdmRepository);
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		importActivator.importEm2CDM(source, cdmRepository, hbm2dll);
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		if (includePesiExport){
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			PesiExportActivatorEM exportActivator = new PesiExportActivatorEM();
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			exportActivator.doExport(cdmRepository);
cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/vibrant/IopiActivator.java
124 124 
	static final boolean doCommonNames = false;
125 125 

  		




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  127
  
  
    
	public void importIopi (Source source, ICdmDataSource destination){


  		




  
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	public void importIopi (Source source, ICdmDataSource destination, DbSchemaValidation hbm2dll){


  		




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		System.out.println("Start import from BerlinModel("+ berlinModelSource.getDatabase() + ") to " + cdmDestination.getDatabase() + " ...");


  		




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		//make BerlinModel Source


  		




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  ......




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		Source source = berlinModelSource;


  		




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		ICdmDataSource cdmRepository = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination;


  		




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		importActivator.importIopi(source, cdmRepository);


  		




  
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		importActivator.importIopi(source, cdmRepository, hbm2dll);


  		




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	}


  		




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      cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/vibrant/MclActivator.java
    
  





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	static final boolean doMarker = false;   //not available in MCL


  		




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  123
  
  
    
	public void importMcl (Source source, ICdmDataSource destination){


  		




  
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	public void importMcl (Source source, ICdmDataSource destination, DbSchemaValidation hbm2dll){


  		




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		System.out.println("Start import from BerlinModel("+ berlinModelSource.getDatabase() + ") to " + cdmDestination.getDatabase() + " ...");


  		




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		//make BerlinModel Source


  		




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  ......




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		Source source = berlinModelSource;


  		




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		ICdmDataSource cdmRepository = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination;


  		




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		importActivator.importMcl(source, cdmRepository);


  		




  
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		importActivator.importMcl(source, cdmRepository, hbm2dll);


  		




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	}


  		




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      cdm-pesi/src/main/java/eu/etaxonomy/cdm/app/vibrant/VibrantActivator.java
    
  





  
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/**


  		




  
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* Copyright (C) 2007 EDIT


  		




  
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* European Distributed Institute of Taxonomy 


  		




  
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* http://www.e-taxonomy.eu


  		




  
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* 


  		




  
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* The contents of this file are subject to the Mozilla Public License Version 1.1


  		




  
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* See LICENSE.TXT at the top of this package for the full license terms.


  		




  
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*/


  		




  
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package eu.etaxonomy.cdm.app.vibrant;


  		




  
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import java.util.UUID;


  		




  
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import org.apache.log4j.Logger;


  		




  
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import eu.etaxonomy.cdm.app.common.BerlinModelSources;


  		




  
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import eu.etaxonomy.cdm.app.common.CdmDestinations;


  		




  
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import eu.etaxonomy.cdm.app.pesi.EuroMedActivator;


  		




  
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import eu.etaxonomy.cdm.database.DatabaseTypeEnum;


  		




  
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import eu.etaxonomy.cdm.database.DbSchemaValidation;


  		




  
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import eu.etaxonomy.cdm.database.ICdmDataSource;


  		




  
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import eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator;


  		




  
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import eu.etaxonomy.cdm.io.common.CdmDefaultImport;


  		




  
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import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;


  		




  
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import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;


  		




  
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import eu.etaxonomy.cdm.io.common.IImportConfigurator.EDITOR;


  		




  
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import eu.etaxonomy.cdm.io.common.Source;


  		




  
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import eu.etaxonomy.cdm.io.pesi.out.PesiTransformer;


  		




  
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import eu.etaxonomy.cdm.model.name.NomenclaturalCode;


  		




  
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/**


  		




  
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 * TODO add the following to a wiki page:


  		




  
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 * HINT: If you are about to import into a mysql data base running under windows and if you wish to dump and restore the resulting data bas under another operation systen 


  		




  
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 * you must set the mysql system variable lower_case_table_names = 0 in order to create data base with table compatible names.


  		




  
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 * 


  		




  
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 * 


  		




  
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 * @author a.mueller


  		




  
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 *


  		




  
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 */


  		




  
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public class VibrantActivator {


  		




  
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	@SuppressWarnings("unused")


  		




  
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	private static final Logger logger = Logger.getLogger(VibrantActivator.class);


  		




  
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	//database validation status (create, update, validate ...)


  		




  
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	static DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;


  		




  
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	static final Source iopiSource = BerlinModelSources.iopi();


  		




  
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	static final Source mclSource = BerlinModelSources.iopi();


  		




  
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	static final Source emSource = BerlinModelSources.iopi();


  		




  
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//	static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql();


  		




  
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	static final ICdmDataSource cdmDestination = cdm_test_local_vibrant();


  		




  
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	static final boolean doMcl = true;


  		




  
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	static final boolean doEuroMed = true;


  		




  
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	static final boolean doIopi = true;


  		




  
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	/**


  		




  
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	 * @param args


  		




  
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	 */


  		




  
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	public static void main(String[] args) {


  		




  
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		ICdmDataSource cdmRepository = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmDestination;


  		




  
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		if (doMcl){


  		




  
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			MclActivator mclActivator = new MclActivator();


  		




  
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			mclActivator.importMcl(iopiSource, cdmRepository, hbm2dll);


  		




  
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			hbm2dll = DbSchemaValidation.NONE;


  		




  
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		}


  		




  
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		if (doEuroMed){


  		




  
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			EuroMedActivator emActivator = new EuroMedActivator();


  		




  
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			emActivator.importEm2CDM(emSource, cdmRepository, hbm2dll);


  		




  
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			hbm2dll = DbSchemaValidation.NONE;


  		




  
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		}


  		




  
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		if (doIopi){


  		




  
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			IopiActivator iopiActivator = new IopiActivator();


  		




  
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			iopiActivator.importIopi(iopiSource, cdmRepository, hbm2dll);


  		




  
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			hbm2dll = DbSchemaValidation.NONE;


  		




  
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		}


  		




  
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	}


  		




  
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	public static ICdmDataSource cdm_test_local_vibrant(){


  		




  
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		DatabaseTypeEnum dbType = DatabaseTypeEnum.MySQL;


  		




  
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		String cdmServer = "127.0.0.1";


  		




  
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		String cdmDB = "iopi"; 


  		




  
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		String cdmUserName = "root";


  		




  
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		return CdmDestinations.makeDestination(dbType, cdmServer, cdmDB, -1, cdmUserName, null);


  		




  
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	}


  		




  
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}


  		












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