EDIT

/**

 * Copyright (C) 2007 EDIT

 * European Distributed Institute of Taxonomy

 * http://www.e-taxonomy.eu

 *

 * The contents of this file are subject to the Mozilla Public License Version 1.1

 * See LICENSE.TXT at the top of this package for the full license terms.

 */

package eu.etaxonomy.cdm.app.proibiosphere;

import java.io.File;

import java.net.URI;

import java.net.URISyntaxException;

import java.util.UUID;

import org.apache.log4j.Logger;

import eu.etaxonomy.cdm.app.common.CdmDestinations;

import eu.etaxonomy.cdm.database.DbSchemaValidation;

import eu.etaxonomy.cdm.database.ICdmDataSource;

import eu.etaxonomy.cdm.io.common.CdmDefaultImport;

import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;

import eu.etaxonomy.cdm.io.specimen.excel.in.SpecimenSynthesysExcelImportConfigurator;

import eu.etaxonomy.cdm.model.reference.Reference;

import eu.etaxonomy.cdm.model.reference.ReferenceFactory;

public class SpecimenImportActivator {

    @SuppressWarnings("unused")

    private static Logger logger = Logger.getLogger(SpecimenImportActivator.class);

    //database validation status (create, update, validate ...)

    static DbSchemaValidation hbm2dll = DbSchemaValidation.VALIDATE;

    final static String excelSource = "/home/pkelbert/Documents/Proibiosphere/ChenopodiumQuentin/dca_UK_records.xls";

    // final static String excelSource = "/home/pkelbert/Documents/Proibiosphere/ChenopodiumQuentin/dca_UK_specimens.xls";

    //	final static String xmlSource = "C:\\localCopy\\eclipse\\cdmlib\\app-import\\src\\main\\resources\\specimenABCD\\CDMtabular9c04a474e2_23_09_08.xls";

    static final ICdmDataSource cdmDestination = CdmDestinations.proibiosphere_chenopodium_local();

    //check - import

    static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;

    /**

     * @param args

     */

    public static void main(String[] args) {

        URI source;

        try {

            URI uri = new File(excelSource).toURI();

            source = new URI(uri.toString());

            System.out.println(source);

            System.out.println("Start import from  Synthesys Specimen data("+ source.toString() + ") ...");

            ICdmDataSource destination = cdmDestination;

            SpecimenSynthesysExcelImportConfigurator specimenImportConfigurator = SpecimenSynthesysExcelImportConfigurator.NewInstance(source,  destination);

            specimenImportConfigurator.setClassificationName("Goosefoots");

            specimenImportConfigurator.setSourceSecId("dca UK records");

            specimenImportConfigurator.setCheck(check);

            specimenImportConfigurator.setDbSchemaValidation(hbm2dll);

            specimenImportConfigurator.setDoAutomaticParsing(true);

            specimenImportConfigurator.setReUseExistingMetadata(true);

            //            specimenImportConfigurator.setDoMatchTaxa(true);

            specimenImportConfigurator.setReUseTaxon(true);

            //            specimenImportConfigurator.setDoCreateIndividualsAssociations(true);

            Reference<?> ref = ReferenceFactory.newBook();

            ref.setUuid(UUID.fromString("98b0a618-a95b-464e-943a-25aaaef202f6"));//observations

            ref.setTitle("Chenopodium vulvaria observations from the British Isles");

            //

            //            ref.setUuid(UUID.fromString("5480eed1-1a23-4ce8-ac4d-c2893e178dea"));//specimens

            //            ref.setTitle("Chenopodium vulvaria specimens from the British Isles");

            specimenImportConfigurator.setDataReference(ref);

            specimenImportConfigurator.setSourceReference(null);

            specimenImportConfigurator.setTaxonReference(null);

            // invoke import

            CdmDefaultImport<SpecimenSynthesysExcelImportConfigurator> specimenImport = new CdmDefaultImport<SpecimenSynthesysExcelImportConfigurator>();

            //new Test().invoke(tcsImportConfigurator);

            specimenImport.invoke(specimenImportConfigurator);

            System.out.println("End import from SpecimenData ("+ source.toString() + ")...");

        } catch (URISyntaxException e) {

            e.printStackTrace();

        }

    }

}