EDIT

/**

* Copyright (C) 2007 EDIT

* European Distributed Institute of Taxonomy 

* http://www.e-taxonomy.eu

* 

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.app.caryophyllales;

import java.util.UUID;

import org.apache.log4j.Logger;

import eu.etaxonomy.cdm.api.application.ICdmApplicationDefaultConfiguration;

import eu.etaxonomy.cdm.app.berlinModelImport.SourceBase;

import eu.etaxonomy.cdm.app.common.CdmDestinations;

import eu.etaxonomy.cdm.database.DbSchemaValidation;

import eu.etaxonomy.cdm.database.ICdmDataSource;

import eu.etaxonomy.cdm.io.caryo.CaryoImportConfigurator;

import eu.etaxonomy.cdm.io.common.CdmDefaultImport;

import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;

import eu.etaxonomy.cdm.io.common.Source;

import eu.etaxonomy.cdm.model.agent.Person;

import eu.etaxonomy.cdm.model.reference.Reference;

import eu.etaxonomy.cdm.model.reference.ReferenceFactory;

/**

 * @author a.mueller

 * @created 16.10.2012

 * @version 1.0

 */

public class CaryoActivator extends SourceBase{

	private static final Logger logger = Logger.getLogger(CaryoActivator.class);

	//database validation status (create, update, validate ...)

	static final DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;

	static final Source source = caryo_len61();

	static final ICdmDataSource cdmDestination = CdmDestinations.localH2();

//	static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql();

//	static final ICdmDataSource cdmDestination = CdmDestinations.cdm_local_postgres_CdmTest();

	static final String classificationName = "Caryophyllales";

	//classification

	static final UUID classificationUuid = UUID.fromString("9edc58b5-de3b-43aa-9f31-1ede7c009c2b");

	//check - import

	static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;

	//taxa

	static final boolean doTaxa = true;

	static final boolean doDeduplicate = true;

	private void doImport(ICdmDataSource cdmDestination){

		//make Source

		CaryoImportConfigurator config= CaryoImportConfigurator.NewInstance(source, cdmDestination);

		config.setClassificationUuid(classificationUuid);

		config.setCheck(check);

		config.setDoTaxa(doTaxa);

		config.setDbSchemaValidation(hbm2dll);

		config.setSourceReferenceTitle("NCU - Caryophyllales, v0.4");

		config.setClassificationName(classificationName);

		CdmDefaultImport<CaryoImportConfigurator> myImport = new CdmDefaultImport<CaryoImportConfigurator>();

		//...

		if (true){

			System.out.println("Start import from ("+ source.toString() + ") ...");

			config.setSourceReference(getSourceReference(config.getSourceReferenceTitle()));

			myImport.invoke(config);

			System.out.println("End import from ("+ source.toString() + ")...");

		}

		//deduplicate

		if (doDeduplicate){

			ICdmApplicationDefaultConfiguration app = myImport.getCdmAppController();

			int count = app.getAgentService().deduplicate(Person.class, null, null);

			logger.warn("Deduplicated " + count + " persons.");

//			count = app.getAgentService().deduplicate(Team.class, null, null);

//			logger.warn("Deduplicated " + count + " teams.");

			count = app.getReferenceService().deduplicate(Reference.class, null, null);

			logger.warn("Deduplicated " + count + " references.");

		}

	}

	private Reference<?> getSourceReference(String string) {

		Reference<?> result = ReferenceFactory.newGeneric();

		result.setTitleCache(string);

		return result;

	}

	public static Source caryo_len61(){

		//	Cyryophyllales source

		String dbms = Source.SQL_SERVER_2008;

		String strServer = "Lenovo-T61";

		String strDB = "caryo";

		int port = 1433;

		String userName = "WebUser";

		return  makeSource(dbms, strServer, strDB, port, userName, null);

	}

	/**

	 * @param args

	 */

	public static void main(String[] args) {

		CaryoActivator me = new CaryoActivator();

		me.doImport(cdmDestination);

	}

}