Revision 14ec817b
Added by Andreas Müller over 5 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelTaxonNameImport.java | ||
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| 46 | 46 |
import eu.etaxonomy.cdm.model.name.TaxonNameFactory; |
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import eu.etaxonomy.cdm.model.reference.INomenclaturalReference; |
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import eu.etaxonomy.cdm.model.reference.Reference; |
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory; |
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import eu.etaxonomy.cdm.strategy.exceptions.UnknownCdmTypeException; |
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import eu.etaxonomy.cdm.strategy.parser.INonViralNameParser; |
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import eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl; |
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/** |
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* @author a.mueller |
| ... | ... | |
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Reference nomReference = |
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getReferenceFromMaps(refDetailMap, refMap, nomRefDetailFk, nomRefFk); |
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if(config.isDoPreliminaryRefDetailsWithNames() && refDetailPrelim){
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makePrelimRefDetailRef(config, rs, taxonName, nameId); |
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} |
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//setNomRef |
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if (nomReference == null ){
|
| ... | ... | |
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return success; |
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} |
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private static TeamOrPersonBase getAuthorTeam(Map<String, Team> teamMap, Object teamIdObject, int nameId, BerlinModelImportConfigurator bmiConfig){
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if (teamIdObject == null){
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private INonViralNameParser<?> parser = NonViralNameParserImpl.NewInstance(); |
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/** |
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* @param config |
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* @param rs |
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* @param taxonName |
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* @param nameId |
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* @throws SQLException |
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*/ |
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private void makePrelimRefDetailRef(IImportConfigurator config, ResultSet rs, TaxonName taxonName, int nameId) throws SQLException {
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String fullNomRefCache = rs.getString("FullNomRefCache");
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if (fullNomRefCache == null){
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logger.warn("fullNomRefCache is null for preliminary refDetail. NameId: " + nameId);
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return; |
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}else if (fullNomRefCache.trim().startsWith(": ")){
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logger.warn("fullNomRefCache starts with for preliminary refDetail. NameId: " + nameId);
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return; |
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}else if (fullNomRefCache.trim().startsWith("in ")){
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String fullStr = taxonName.getTitleCache()+ " " + fullNomRefCache; |
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INonViralName newName = parser.parseReferencedName(fullStr, config.getNomenclaturalCode(), taxonName.getRank()); |
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if (newName.isProtectedFullTitleCache()){
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Reference nomRef = ReferenceFactory.newGeneric(); |
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nomRef.setAbbrevTitleCache(fullNomRefCache, true); |
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taxonName.setNomenclaturalReference(nomRef); |
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//check detail |
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}else{
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Reference nomRef = newName.getNomenclaturalReference(); |
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taxonName.setNomenclaturalReference(nomRef); |
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String detail = newName.getNomenclaturalMicroReference(); |
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String oldDetail = taxonName.getNomenclaturalMicroReference(); |
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if (isBlank(detail)){
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if (isNotBlank(oldDetail)){
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logger.warn("Detail could not be parsed but seems to exist. NameId: " + nameId);
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} |
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}else{
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if (isNotBlank(oldDetail) && !detail.equals(oldDetail)){
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logger.warn("Details differ: " + detail + " <-> " + oldDetail + ". NameId: " + nameId);
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} |
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taxonName.setNomenclaturalMicroReference(detail); |
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} |
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} |
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}else{
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String fullStrComma = taxonName.getTitleCache()+ ", " + fullNomRefCache; |
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String fullStrIn = taxonName.getTitleCache()+ " in " + fullNomRefCache; |
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INonViralName newNameComma = parser.parseReferencedName(fullStrComma, config.getNomenclaturalCode(), taxonName.getRank()); |
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INonViralName newNameIn = parser.parseReferencedName(fullStrIn, config.getNomenclaturalCode(), taxonName.getRank()); |
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INonViralName newName; |
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boolean commaProtected = newNameComma.isProtectedFullTitleCache() || (newNameComma.getNomenclaturalReference() != null |
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&& newNameComma.getNomenclaturalReference().isProtectedTitleCache()); |
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boolean inProtected = newNameIn.isProtectedFullTitleCache() || (newNameIn.getNomenclaturalReference() != null |
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&& newNameIn.getNomenclaturalReference().isProtectedTitleCache()); |
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if (commaProtected && !inProtected){
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newName = newNameIn; |
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}else if (!commaProtected && inProtected){
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newName = newNameComma; |
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}else if (commaProtected && inProtected){
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logger.warn("Can't parse preliminary refDetail: " + fullNomRefCache + " for name " + taxonName.getTitleCache() + "; nameId: " + nameId );
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newName = newNameComma; |
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}else{
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logger.warn("Can't decide ref type for preliminary refDetail: " + fullNomRefCache + " for name " + taxonName.getTitleCache() + "; nameId: " + nameId );
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newName = newNameComma; |
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} |
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if (newName.isProtectedFullTitleCache()){
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Reference nomRef = ReferenceFactory.newGeneric(); |
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nomRef.setAbbrevTitleCache(fullNomRefCache, true); |
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taxonName.setNomenclaturalReference(nomRef); |
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//check detail |
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}else{
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Reference nomRef = newName.getNomenclaturalReference(); |
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taxonName.setNomenclaturalReference(nomRef); |
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String detail = newName.getNomenclaturalMicroReference(); |
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String oldDetail = taxonName.getNomenclaturalMicroReference(); |
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if (isBlank(detail)){
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if (isNotBlank(oldDetail)){
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logger.warn("Detail could not be parsed but seems to exist. NameId: " + nameId);
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} |
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}else{
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if (isNotBlank(oldDetail) && !detail.equals(oldDetail)){
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logger.warn("Details differ: " + detail + " <-> " + oldDetail + ". NameId: " + nameId);
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} |
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taxonName.setNomenclaturalMicroReference(detail); |
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} |
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} |
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} |
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} |
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private static TeamOrPersonBase<?> getAuthorTeam(Map<String, Team> teamMap, Integer teamIdInt, int nameId, BerlinModelImportConfigurator config){
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if (teamIdInt == null){
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return null; |
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}else {
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String teamIdStr = String.valueOf(teamIdInt); |
Also available in: Unified diff
ref #7800 parse preliminary RefDetails (first start)