EDIT

// $Id$

/**

* Copyright (C) 2016 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.app.mexico;

import java.net.URI;

import java.util.UUID;

import org.apache.log4j.Logger;

import eu.etaxonomy.cdm.app.common.CdmDestinations;

import eu.etaxonomy.cdm.database.DbSchemaValidation;

import eu.etaxonomy.cdm.database.ICdmDataSource;

import eu.etaxonomy.cdm.io.common.CdmDefaultImport;

import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;

import eu.etaxonomy.cdm.io.mexico.MexicoConabioImportConfigurator;

import eu.etaxonomy.cdm.model.reference.Reference;

import eu.etaxonomy.cdm.model.reference.ReferenceFactory;

/**

 * @author a.mueller

 * @date 16.06.2016

 *

 */

public class MexicoConabioActivator {

    private static final Logger logger = Logger.getLogger(MexicoConabioActivator.class);

    //database validation status (create, update, validate ...)

    static DbSchemaValidation hbm2dll = DbSchemaValidation.VALIDATE;

//    static final ICdmDataSource cdmDestination = CdmDestinations.localH2();

  static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql_test();

//    static final ICdmDataSource cdmDestination = CdmDestinations.cdm_mexico_production();

    static boolean invers = true;

//    boolean doRubiaceae = include;

//    static boolean include = !invers;

    //feature tree uuid

    public static final UUID featureTreeUuid = UUID.fromString("d1f4ed29-9aae-4f6e-aa1e-4a3bf780e11d");

    //classification

    static final UUID classificationUuid = UUID.fromString("61968b43-e881-4043-b5c2-ba192e8f72dc");

    private static final String classificationName = "Rubiaceae Conabio";

    static final String sourceReferenceTitle = "Conabio XXX";

    //check - import

    static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;

    boolean doVocabularies = (hbm2dll == DbSchemaValidation.CREATE);

    static final boolean doTaxa = true;

    static final boolean doDistributions = false;

    static final boolean doCommonNames = false;

//    static final boolean doDeduplicate = true;

    private void doImport(ICdmDataSource cdmDestination){

        URI source = conabio_rubiaceae();

        //make Source

        MexicoConabioImportConfigurator config= MexicoConabioImportConfigurator.NewInstance(source, cdmDestination);

        config.setClassificationUuid(classificationUuid);

        config.setClassificationName(classificationName);

        config.setCheck(check);

        config.setDoTaxa(doTaxa);

        config.setDoDistributions(doDistributions);

        config.setDoCommonNames(doCommonNames);

        config.setDbSchemaValidation(hbm2dll);

        config.setSourceReferenceTitle(sourceReferenceTitle);

//        config.setDoVocabularies(doVocabularies);

        config.setSource(source);

        String fileName = source.toString();

        fileName = fileName.substring(fileName.lastIndexOf("/") + 1 );

        String message = "Start import from ("+ fileName + ") ...";

        System.out.println(message);

        logger.warn(message);

        config.setSourceReference(getSourceReference(sourceReferenceTitle));

//        config.setDoVocabularies(doVocabularies);

        CdmDefaultImport<MexicoConabioImportConfigurator> myImport = new CdmDefaultImport<MexicoConabioImportConfigurator>();

        myImport.invoke(config);

//        if (makeFeatureTree){

//            FeatureTree tree = makeFeatureNodes(myImport.getCdmAppController().getTermService());

//            myImport.getCdmAppController().getFeatureTreeService().saveOrUpdate(tree);

//        }

        System.out.println("End import from ("+ source.toString() + ")...");

    }

    //Conabio Rubiaceae

    public static URI conabio_rubiaceae() {

        return URI.create("file:////BGBM-PESIHPC/Mexico/CONABIO-Rubiaceae.xlsx");

    }

    private Reference getSourceReference(String string) {

        Reference result = ReferenceFactory.newGeneric();

        result.setTitleCache(string, true);

//        result.setInReference(inRef);

//        inRef.setTitleCache(sourceReferenceTitle, true);

        return result;

    }

    /**

     * @param args

     */

    public static void main(String[] args) {

        MexicoConabioActivator me = new MexicoConabioActivator();

        me.doImport(cdmDestination);

        System.exit(0);

    }

}