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/**
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* Copyright (C) 2009 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.pesi.out;
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import java.sql.ResultSet;
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import java.sql.SQLException;
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import java.util.EnumSet;
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import java.util.HashMap;
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import java.util.HashSet;
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import java.util.Map;
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import java.util.Set;
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import java.util.UUID;
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import org.apache.commons.lang.StringUtils;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.common.CdmUtils;
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import eu.etaxonomy.cdm.io.berlinModel.BerlinModelTransformer;
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import eu.etaxonomy.cdm.io.common.Source;
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import eu.etaxonomy.cdm.io.common.mapping.UndefinedTransformerMethodException;
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import eu.etaxonomy.cdm.io.common.mapping.out.ExportTransformerBase;
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import eu.etaxonomy.cdm.io.pesi.erms.ErmsTransformer;
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import eu.etaxonomy.cdm.io.pesi.faunaEuropaea.FaunaEuropaeaTransformer;
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import eu.etaxonomy.cdm.io.pesi.out.PesiExportBase.PesiSource;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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import eu.etaxonomy.cdm.model.common.Language;
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import eu.etaxonomy.cdm.model.common.RelationshipBase;
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import eu.etaxonomy.cdm.model.common.RelationshipTermBase;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm;
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import eu.etaxonomy.cdm.model.location.Country;
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import eu.etaxonomy.cdm.model.location.NamedArea;
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import eu.etaxonomy.cdm.model.name.HybridRelationshipType;
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import eu.etaxonomy.cdm.model.name.NameRelationshipType;
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import eu.etaxonomy.cdm.model.name.NameTypeDesignationStatus;
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import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
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import eu.etaxonomy.cdm.model.name.NomenclaturalStatusType;
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import eu.etaxonomy.cdm.model.name.Rank;
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import eu.etaxonomy.cdm.model.name.TaxonName;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.reference.ReferenceType;
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import eu.etaxonomy.cdm.model.taxon.Synonym;
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import eu.etaxonomy.cdm.model.taxon.SynonymType;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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import eu.etaxonomy.cdm.model.taxon.TaxonBase;
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import eu.etaxonomy.cdm.model.taxon.TaxonNode;
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import eu.etaxonomy.cdm.model.taxon.TaxonRelationship;
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import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType;
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import eu.etaxonomy.cdm.strategy.exceptions.UnknownCdmTypeException;
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/**
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 * @author e.-m.lee
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 * @author a.mueller (update)
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 * @since 16.02.2010
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 */
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public final class PesiTransformer extends ExportTransformerBase{
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    private static final Logger logger = Logger.getLogger(PesiTransformer.class);
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	public static final String AUCT_STRING = "auct.";
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	//sourceRefUUIDs
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	public static final UUID uuidSourceRefEuroMed = UUID.fromString("51b3900c-91e0-4cc5-94f3-577a352ca9c4");
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	public static final UUID uuidSourceRefFaunaEuropaea = UUID.fromString("f27a5e67-d065-4b79-8d41-eabd3ae0edd0");
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	public static final UUID uuidSourceRefErms = UUID.fromString("7744bc26-f914-42c4-b54a-dd2a030a8bb7");
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	public static final UUID uuidSourceRefIndexFungorum = UUID.fromString("8de25d27-7d40-47f4-af3b-59d64935a843");
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	public static final UUID uuidSourceRefAuct = UUID.fromString("5f79f96c-c100-4cd8-b78e-2b2dacf09a23");
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	public static final UUID uuidSourceRefFaunaEuropaea_fromSql = UUID.fromString("6786d863-75d4-4796-b916-c1c3dff4cb70");
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    public static final UUID uuidTaxonValuelessEuroMed = UUID.fromString("f0a9322b-a57e-447b-9a75-a909f2f2a994");
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	public static final String SOURCE_STR_EM = "E+M";
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	public static final String SOURCE_STR_FE = "FaEu";
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	public static final String SOURCE_STR_IF = "IF";
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	public static final String SOURCE_STR_ERMS = "ERMS";
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	// status keys
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	private static int QUALITY_STATUS_CHECKED_EDITOR_ERMS_1_1 = 0;
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	private static int QUALITY_STATUS_ADD_BY_DBMT= 2;
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	private static int QUALITY_STATUS_CHECKED_EDITOR = 3;
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	private static int QUALITY_STATUS_EDITED_BY_DBMT = 4;
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	private static int QUALITY_STATUS_THEMATIC_EDITOR = 5;
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	// marker type
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	public static final UUID uuidMarkerGuidIsMissing = UUID.fromString("24e70843-05e2-44db-954b-84df0d23ea20");
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	public static final UUID uuidMarkerTypeHasNoLastAction = UUID.fromString("99652d5a-bc92-4251-b57d-0fec4d258ab7");
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//	public static final UUID uuidMarkerFossil = UUID.fromString("761ce108-031a-4e07-b444-f8d757070312");
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	//extension type uuids
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	public static final UUID uuidExtCacheCitation = UUID.fromString("29656168-32d6-4301-9067-d57c63be5c67");
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	//public static final UUID expertUserIdUuid = UUID.fromString("e25813d3-c67c-4585-9aa0-970fafde50b4");
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	//public static final UUID speciesExpertUserIdUuid = UUID.fromString("6d42abd8-8894-4980-ae07-e918affd4172");
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	public static final UUID uuidExtExpertName = BerlinModelTransformer.uuidExpertName;
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	public static final UUID uuidExtSpeciesExpertName = BerlinModelTransformer.uuidSpeciesExpertName;
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	public static final UUID uuidExtLastActionDate = UUID.fromString("8d0a7d81-bb83-4576-84c3-8c906ef039b2");
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	public static final UUID uuidExtLastAction = UUID.fromString("bc20d5bc-6161-4279-9499-89ea26ce5f6a");
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	public static final UUID uuidExtTaxComment = UUID.fromString("8041a752-0479-4626-ab1b-b266b751f816");
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	public static final UUID uuidExtFauComment = UUID.fromString("054f773a-41c8-4ad5-83e3-981320c1c126");
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	public static final UUID uuidExtFauExtraCodes = UUID.fromString("b8c7e77d-9869-4787-bed6-b4b302dbc5f5");
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	// References
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	private static int REF_ARTICLE_IN_PERIODICAL = 1;
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	private static int REF_PART_OF_OTHER = 2;
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	public static int REF_BOOK = 3;
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	public static int REF_DATABASE = 4;
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	private static int REF_INFORMAL = 5;
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	private static int REF_NOT_APPLICABLE = 6;
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	private static int REF_WEBSITE = 7;
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	public static int REF_PUBLISHED_CD = 8;
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	public static int REF_JOURNAL = 9;
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	public static int REF_UNRESOLVED = 10;
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	public static int REF_PUBLICATION = 11;
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	public static String REF_STR_UNRESOLVED = "unresolved";
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	private static int LANG_UNKNOWN = -99;
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	private static int LANG_DUTCH = 11;
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    private static int LANG_VALENCIAN = 65;
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	private static int LANG_HIGH_ARAGONES = 66;
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	private static int LANG_MAJORCAN = 67;
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	// NameStatus
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    public static UUID uuidNomStatusTemporaryName = UUID.fromString("aa6ada5a-ca21-4fef-b76f-9ae237e9c4ae");
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	private static int NAME_ST_NOM_INVAL = 1;
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	private static int NAME_ST_NOM_ILLEG = 2;
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	private static int NAME_ST_NOM_NUD = 3;
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	private static int NAME_ST_NOM_REJ = 4;
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	private static int NAME_ST_NOM_REJ_PROP = 5;
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	private static int NAME_ST_NOM_UTIQUE_REJ = 6;
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	private static int NAME_ST_NOM_UTIQUE_REJ_PROP = 7;
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	private static int NAME_ST_NOM_CONS = 8;
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	private static int NAME_ST_NOM_CONS_PROP = 9;
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	private static int NAME_ST_ORTH_CONS = 10;
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	private static int NAME_ST_ORTH_CONS_PROP = 11;
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	private static int NAME_ST_NOM_SUPERFL = 12;
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	private static int NAME_ST_NOM_AMBIG = 13;
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	private static int NAME_ST_NOM_PROVIS = 14;
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	private static int NAME_ST_NOM_DUB = 15;
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	private static int NAME_ST_NOM_NOV = 16;
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	private static int NAME_ST_NOM_CONFUS = 17;
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	private static int NAME_ST_NOM_ALTERN = 18;
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	private static int NAME_ST_COMB_INVAL = 19;
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	private static int NAME_ST_LEGITIMATE = 20; // PESI specific from here
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	private static int NAME_ST_COMB_INED = 21;
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	private static int NAME_ST_COMB_AND_STAT_INED = 22;
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	private static int NAME_ST_NOM_AND_ORTH_CONS = 23;
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	private static int NAME_ST_NOM_NOV_INED = 24;
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	private static int NAME_ST_SP_NOV_INED = 25;
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	private static int NAME_ST_ALTERNATE_REPRESENTATION = 26;
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	private static int NAME_ST_TEMPORARY_NAME = 27;
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	private static int NAME_ST_SPECIES_INQUIRENDA = 28;
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	// TaxonStatus
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	public static int T_STATUS_ACCEPTED = 1;
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	public static int T_STATUS_SYNONYM = 2;
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	public static int T_STATUS_PARTIAL_SYN = 3;
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	public static int T_STATUS_PRO_PARTE_SYN = 4;
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	private static int T_STATUS_UNRESOLVED = 5;
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	private static int T_STATUS_ORPHANED = 6;
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	public static int T_STATUS_UNACCEPTED = 7;
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	private static int T_STATUS_NOT_ACCEPTED_VALUELESS = 8;
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	// TypeDesginationStatus //	 -> not a table anymore
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	private static int TYPE_BY_ORIGINAL_DESIGNATION = 1;
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	private static int TYPE_BY_SUBSEQUENT_DESIGNATION = 2;
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	private static int TYPE_BY_MONOTYPY = 3;
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	private static String TYPE_STR_BY_ORIGINAL_DESIGNATION = "Type by original designation";
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	private static String TYPE_STR_BY_SUBSEQUENT_DESIGNATION = "Type by subsequent designation";
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	private static String TYPE_STR_BY_MONOTYPY = "Type by monotypy";
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	// RelTaxonQualifier
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	private static int IS_BASIONYM_FOR = 1;
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	private static int IS_LATER_HOMONYM_OF = 2;
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	private static int IS_REPLACED_SYNONYM_FOR = 3;
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	private static int IS_VALIDATION_OF = 4;
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	private static int IS_LATER_VALIDATION_OF = 5;
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	private static int IS_TYPE_OF = 6;
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	private static int IS_CONSERVED_TYPE_OF = 7;
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	private static int IS_REJECTED_TYPE_OF = 8;
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	private static int IS_FIRST_PARENT_OF = 9;
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	private static int IS_SECOND_PARENT_OF = 10;
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	private static int IS_FEMALE_PARENT_OF = 11;
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	private static int IS_MALE_PARENT_OF = 12;
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	private static int IS_CONSERVED_AGAINST = 13;
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	private static int IS_REJECTED_IN_FAVOUR_OF = 14;
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	private static int IS_TREATED_AS_LATER_HOMONYM_OF = 15;
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	private static int IS_ORTHOGRAPHIC_VARIANT_OF = 16;
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	private static int IS_ALTERNATIVE_NAME_FOR = 17;
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	private static int HAS_SAME_TYPE_AS = 18;
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	private static int IS_ORIGINAL_SPELLING_FOR = 19;
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	private static int IS_BLOCKING_NAME_FOR = 20;
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	private static int IS_LECTOTYPE_OF = 61;
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	private static int TYPE_NOT_DESIGNATED = 62;
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	public static int IS_TAXONOMICALLY_INCLUDED_IN = 101;
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	public static int IS_SYNONYM_OF = 102;
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	private static int IS_MISAPPLIED_NAME_FOR = 103;
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	private static int IS_PRO_PARTE_SYNONYM_OF = 104;
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	private static int IS_PARTIAL_SYNONYM_OF = 105;
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	private static int IS_HETEROTYPIC_SYNONYM_OF = 106;
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	private static int IS_HOMOTYPIC_SYNONYM_OF = 107;
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	private static int IS_PRO_PARTE_MISAPPLIED_NAME_FOR = 108;
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	private static int IS_PRO_PARTE_AND_HOMOTYPIC_SYNONYM_OF = 201;
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	private static int IS_PRO_PARTE_AND_HETEROTYPIC_SYNONYM_OF = 202;
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	private static int IS_PARTIAL_AND_HOMOTYPIC_SYNONYM_OF = 203;
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	private static int IS_PARTIAL_AND_HETEROTYPIC_SYNONYM_OF = 204;
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	private static int IS_INFERRED_EPITHET_FOR = 301;
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	private static int IS_INFERRED_GENUS_FOR = 302;
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	private static int IS_POTENTIAL_COMBINATION_FOR = 303;
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	//namespaces
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	public static String STR_NAMESPACE_NOMINAL_TAXON = "Nominal taxon from TAX_ID:";
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	public static String STR_NAMESPACE_INFERRED_EPITHET = "Inferred epithet from TAX_ID:";
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	public static String STR_NAMESPACE_INFERRED_GENUS = "Inferred genus from TAX_ID:";
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	public static String STR_NAMESPACE_POTENTIAL_COMBINATION = "Potential combination from TAX_ID:";
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	// Kingdoms
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	private static final int KINGDOM_NULL = 0;
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	private static final int KINGDOM_ANIMALIA = 2;
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	private static final int KINGDOM_PLANTAE = 3;
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	private static final int KINGDOM_FUNGI = 4;
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	private static final int KINGDOM_PROTOZOA = 5;
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	private static final int KINGDOM_BACTERIA = 6;
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	private static final int KINGDOM_CHROMISTA = 7;
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	// Kingdoms
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	private static Map<String, Integer> pesiKingdomMap = new HashMap<>();
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	//Kingdom title
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    private static String KINGDOM_PLANTAE_STRING = "Plantae";
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    private static String KINGDOM_FUNGI_STRING = "Fungi";
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    private static String KINGDOM_PROTOZOA_STRING = "Protozoa";
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    private static String kINGDOM_BACTERIA_STRING = "Bacteria";
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    private static String KINGDOM_CHROMISTA_STRING = "Chromista";
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	//ranks of all kingdoms
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    private static int Kingdom = 10;
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    private static int Subkingdom = 20;
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    private static int Phylum = 30;  //Phylum and Division is same (#8541) according to ICNAFP
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    private static int Division = 30;
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    private static int Subphylum = 40;  //See above comment
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    private static int Subdivision = 40;
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    private static int Class = 60;
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    private static int Subclass = 70;
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    private static int Order = 100;
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    private static int Suborder = 110;
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    private static int Family = 140;
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    private static int Subfamily = 150;
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    private static int Tribe = 160;
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    private static int Subtribe = 170;
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    private static int Genus = 180;
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    private static int Subgenus = 190;
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    private static int Species =220;
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    private static int Subspecies = 230;
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    private static int Variety = 240;
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    private static int Forma = 260;
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    //ranks of some kingdoms
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    private static int Infrakingdom = 25; //2,3,5,7
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    private static int Infraphylum = 45;  //2,7
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    private static int Superclass = 50;   //2,5,6,7
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    private static int Infraclass = 80;   //2,5,6,7
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    private static int Superorder = 90;   //2,3,5,6,7
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    private static int Infraorder = 120;  //2,5,6,7
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    private static int Superfamily = 130; //2,5,6,7
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    private static int Bot_Section = 200;    //3,4,7
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    private static int Bot_Subsection = 210; //3,4,7
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    private static int Subvariety = 250;     //2,3,4,7
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    private static int Subform = 270;        //2,3,4
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    private static int Forma_spec = 275;     //3,4,5,7
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    // Animalia Ranks
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	private static int Superphylum = 28;
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	private static int Subterclass = 85;
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	private static int Parvorder = 122;
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	private static int Animalia_Section = 125;
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	private static int Animalia_Subsection = 127;
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	private static int Natio = 235;
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	// Plantae Ranks
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	private static int Series = 212;
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	private static int Subseries	= 214;
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	private static int Aggregate	= 216;
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	private static int Coll_Species = 218;
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	private static int Grex = 225;
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	private static int Proles = 232;
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	private static int Race = 234;
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	private static int Convarietas = 236;
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	private static int Taxa_infragen = 280;
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	private static int Taxa_infraspec = 285;
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	//NoteCategory
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	private static int NoteCategory_description = 1;
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	public static int NoteCategory_ecology = 4;
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	private static int NoteCategory_phenology	= 5;
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	private static int NoteCategory_general_distribution_euromed = 10;
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	private static int NoteCategory_general_distribution_world = 11;
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	private static int NoteCategory_Common_names = 12;
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	private static int NoteCategory_Occurrence = 13;
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	private static int NoteCategory_Maps =14;
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	private static int NoteCategory_Link_to_maps = 20;
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	private static int NoteCategory_Link_to_images = 21;
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	public static int NoteCategory_Link_to_taxonomy = 22;
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	public static int NoteCategory_Link_to_general_information = 23;
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	public static int NoteCategory_undefined_link = 24;
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	private static int NoteCategory_Editor_Braces = 249;
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	private static int NoteCategory_Editor_Brackets = 250;
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	private static int NoteCategory_Editor_Parenthesis = 251;
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	private static int NoteCategory_Inedited = 252;
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	private static int NoteCategory_Comments_on_editing_process = 253;
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	private static int NoteCategory_Publication_date = 254;
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	private static int NoteCategory_Morphology = 255;
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	private static int NoteCategory_Acknowledgments = 257;
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	private static int NoteCategory_Original_publication = 258;
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	private static int NoteCategory_Type_locality	= 259;
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	private static int NoteCategory_Environment = 260;
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	private static int NoteCategory_Spelling = 261;
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	private static int NoteCategory_Systematics = 262;
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	private static int NoteCategory_Remark = 263;
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	private static int NoteCategory_Additional_information = 266;
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	private static int NoteCategory_Status = 267;
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	private static int NoteCategory_Nomenclature = 268;
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	private static int NoteCategory_Homonymy = 269;
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	private static int NoteCategory_Taxonomy = 270;
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	private static int NoteCategory_Taxonomic_status = 272;
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	private static int NoteCategory_Authority	= 273;
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	private static int NoteCategory_Identification = 274;
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	private static int NoteCategory_Validity = 275;
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	private static int NoteCategory_Classification = 276;
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	private static int NoteCategory_Distribution = 278;
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	private static int NoteCategory_Synonymy = 279;
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	private static int NoteCategory_Habitat = 280;
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	private static int NoteCategory_Biology = 281;
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	private static int NoteCategory_Diagnosis	= 282;
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	private static int NoteCategory_Host = 283;
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	private static int NoteCategory_Note = 284;
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	private static int NoteCategory_Rank = 285;
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	private static int NoteCategory_Taxonomic_Remark = 286;
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	private static int NoteCategory_Taxonomic_Remarks = 287;
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	private static int NoteCategory_Etymology = 288;
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    private static int NoteCategory_Type_species = 289;
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	private static int NoteCategory_Depth_Range = 290;
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	private static int NoteCategory_Grammatical_Gender = 291;
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	private static int NoteCategory_Introduced_Species_Remark = 292;
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	private static int NoteCategory_Alien_Species = 293;
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	private static int NoteCategory_Dimensions = 294;
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    private static int NoteCategory_New_Combination = 295;
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    private static int NoteCategory_Original_Combination = 296;
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	private static int NoteCategory_Conservation_Status= 301;
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	private static int NoteCategory_Use = 302;
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	private static int NoteCategory_Comments = 303;
361
    private static int NoteCategory_Diet = 304;
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    private static int NoteCategory_Fossil_Range = 305;
363
    private static int NoteCategory_Original_Description = 306;
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    private static int NoteCategory_Reproduction = 307;
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    private static int NoteCategory_Specimen = 308;
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    private static int NoteCategory_Type_Specimen = 309;
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    private static int NoteCategory_Type_Material = 310;
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    private static int NoteCategory_Editors_Comment = 311;
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    private static int NoteCategory_Syntype = 312;
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	// FossilStatus
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	private static int FOSSILSTATUS_RECENT_ONLY = 1;
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	private static int FOSSILSTATUS_FOSSIL_ONLY = 2;
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	private static int FOSSILSTATUS_RECENT_FOSSIL = 3;
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	public static String STR_FOSSIL_ONLY = "fossil only";  //still used for Index Fungorum
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	// SourceUse
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	private static int ORIGINAL_DESCRIPTION = 1;
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	private static int BASIS_OF_RECORD = 2;
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	private static int ADDITIONAL_SOURCE = 3;
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	private static int SOURCE_OF_SYNONYMY = 4;
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	private static int REDESCRIPTION = 5;
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	private static int NEW_COMBINATION_REFERENCE = 6;
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	private static int STATUS_SOURCE = 7;
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	public static int NOMENCLATURAL_REFERENCE = 8;
386
	public static String STR_NOMENCLATURAL_REFERENCE = "nomenclatural reference";
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	// Area
389
	private static int AREA_EAST_AEGEAN_ISLANDS = 1;
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	private static int AREA_GREEK_EAST_AEGEAN_ISLANDS = 2;
391
	private static int AREA_TURKISH_EAST_AEGEAN_ISLANDS = 3;
392
	private static int AREA_ALBANIA = 4;
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	private static int AREA_AUSTRIA_WITH_LIECHTENSTEIN = 5;
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	private static int AREA_AUSTRIA = 6;
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	private static int AREA_LIECHTENSTEIN = 7;
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	private static int AREA_AZORES = 8;
397
	private static int AREA_CORVO = 9;
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	private static int AREA_FAIAL = 10;
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	private static int AREA_GRACIOSA = 11;
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	private static int AREA_SAO_JORGE = 12;
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	private static int AREA_FLORES = 13;
402
	private static int AREA_SAO_MIGUEL = 14;
403
	private static int AREA_PICO = 15;
404
	private static int AREA_SANTA_MARIA = 16;
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	private static int AREA_TERCEIRA = 17;
406
	private static int AREA_BELGIUM_WITH_LUXEMBOURG = 18;
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	private static int AREA_BELGIUM = 19;
408
	private static int AREA_LUXEMBOURG = 20;
409
	private static int AREA_BOSNIA_HERZEGOVINA = 21;
410
	private static int AREA_BALEARES = 22;
411
	private static int AREA_IBIZA_WITH_FORMENTERA = 23;
412
	private static int AREA_MALLORCA = 24;
413
	private static int AREA_MENORCA = 25;
414
	private static int AREA_GREAT_BRITAIN = 26;
415
	private static int AREA_BALTIC_STATES_ESTONIA_LATVIA_LITHUANIA_AND_KALININGRAD_REGION = 27;
416
	private static int AREA_BULGARIA = 28;
417
	private static int AREA_BELARUS = 29;
418
	private static int AREA_CANARY_ISLANDS = 30;
419
	private static int AREA_GRAN_CANARIA = 31;
420
	private static int AREA_FUERTEVENTURA_WITH_LOBOS = 32;
421
	private static int AREA_GOMERA = 33;
422
	private static int AREA_HIERRO = 34;
423
	private static int AREA_LANZAROTE_WITH_GRACIOSA = 35;
424
	private static int AREA_LA_PALMA = 36;
425
	private static int AREA_TENERIFE = 37;
426
	private static int AREA_MONTENEGRO = 38;
427
	private static int AREA_CORSE = 39;
428
	private static int AREA_CRETE_WITH_KARPATHOS_KASOS_AND_GAVDHOS = 40;
429
	private static int AREA_CZECH_REPUBLIC = 41;
430
	private static int AREA_CROATIA = 42;
431
	private static int AREA_CYPRUS = 43;
432
	private static int AREA_FORMER_CZECHOSLOVAKIA = 44;
433
	private static int AREA_DENMARK_WITH_BORNHOLM = 45;
434
	private static int AREA_ESTONIA = 46;
435
	private static int AREA_FAROE_ISLANDS = 47;
436
	private static int AREA_FINLAND_WITH_AHVENANMAA = 48;
437
	private static int AREA_FRANCE = 49;
438
	private static int AREA_CHANNEL_ISLANDS = 50;
439
	private static int AREA_FRENCH_MAINLAND = 51;
440
	private static int AREA_MONACO = 52;
441
	private static int AREA_GERMANY = 53;
442
	private static int AREA_GREECE_WITH_CYCLADES_AND_MORE_ISLANDS = 54;
443
	private static int AREA_IRELAND = 55;
444
	private static int AREA_REPUBLIC_OF_IRELAND = 56;
445
	private static int AREA_NORTHERN_IRELAND = 57;
446
	private static int AREA_SWITZERLAND = 58;
447
	private static int AREA_NETHERLANDS = 59;
448
	private static int AREA_SPAIN = 60;
449
	private static int AREA_ANDORRA = 61;
450
	private static int AREA_GIBRALTAR = 62;
451
	private static int AREA_KINGDOM_OF_SPAIN = 63;
452
	private static int AREA_HUNGARY = 64;
453
	private static int AREA_ICELAND = 65;
454
	private static int AREA_ITALY = 66;
455
	private static int AREA_ITALIAN_MAINLAND = 67;
456
	private static int AREA_SAN_MARINO = 68;
457
	private static int AREA_FORMER_JUGOSLAVIA = 69;
458
	private static int AREA_LATVIA = 70;
459
	private static int AREA_LITHUANIA = 71;
460
	private static int AREA_PORTUGUESE_MAINLAND = 72;
461
	private static int AREA_MADEIRA_ARCHIPELAGO = 73;
462
	private static int AREA_DESERTAS = 74;
463
	private static int AREA_MADEIRA = 75;
464
	private static int AREA_PORTO_SANTO = 76;
465
	private static int AREA_THE_FORMER_JUGOSLAV_REPUBLIC_OF_MAKEDONIJA = 77;
466
	private static int AREA_MOLDOVA = 78;
467
	private static int AREA_NORWEGIAN_MAINLAND = 79;
468
	private static int AREA_POLAND = 80;
469
	private static int AREA_THE_RUSSIAN_FEDERATION = 81;
470
	private static int AREA_NOVAYA_ZEMLYA_AND_FRANZ_JOSEPH_LAND = 82;
471
	private static int AREA_CENTRAL_EUROPEAN_RUSSIA = 83;
472
	private static int AREA_EASTERN_EUROPEAN_RUSSIA = 84;
473
	private static int AREA_KALININGRAD = 85;
474
	private static int AREA_NORTHERN_EUROPEAN_RUSSIA = 86;
475
	private static int AREA_NORTHWEST_EUROPEAN_RUSSIA = 87;
476
	private static int AREA_SOUTH_EUROPEAN_RUSSIA = 88;
477
	private static int AREA_ROMANIA = 89;
478
	private static int AREA_FORMER_USSR = 90;
479
	private static int AREA_RUSSIA_BALTIC = 91;
480
	private static int AREA_RUSSIA_CENTRAL = 92;
481
	private static int AREA_RUSSIA_SOUTHEAST = 93;
482
	private static int AREA_RUSSIA_NORTHERN = 94;
483
	private static int AREA_RUSSIA_SOUTHWEST = 95;
484
	private static int AREA_SARDEGNA = 96;
485
	private static int AREA_SVALBARD_WITH_BJORNOYA_AND_JAN_MAYEN = 97;
486
	private static int AREA_SELVAGENS_ISLANDS = 98;
487
	private static int AREA_SICILY_WITH_MALTA = 99;
488
	private static int AREA_MALTA = 100;
489
	private static int AREA_SICILY = 101;
490
	private static int AREA_SLOVAKIA = 102;
491
	private static int AREA_SLOVENIA = 103;
492
	private static int AREA_SERBIA_WITH_MONTENEGRO = 104;
493
	private static int AREA_SERBIA_INCLUDING_VOJVODINA_AND_WITH_KOSOVO = 105;
494
	private static int AREA_SWEDEN = 106;
495
	private static int AREA_EUROPEAN_TURKEY = 107;
496
	private static int AREA_UKRAINE_INCLUDING_CRIMEA = 108;
497
	private static int AREA_CRIMEA = 109;
498
	private static int AREA_UKRAINE = 110;
499
	private static int AREA_GREEK_MAINLAND = 111;
500
	private static int AREA_CRETE = 112;
501
	private static int AREA_DODECANESE_ISLANDS = 113;
502
	private static int AREA_CYCLADES_ISLANDS = 114;
503
	private static int AREA_NORTH_AEGEAN_ISLANDS = 115;
504
	private static int AREA_VATICAN_CITY = 116;
505
	private static int AREA_FRANZ_JOSEF_LAND = 117;
506
	private static int AREA_NOVAYA_ZEMLYA = 118;
507
	private static int AREA_AZERBAIJAN_INCLUDING_NAKHICHEVAN = 119;
508
	private static int AREA_AZERBAIJAN = 120;
509
	private static int AREA_NAKHICHEVAN = 121;
510
	private static int AREA_ALGERIA = 122;
511
	private static int AREA_ARMENIA = 123;
512
	private static int AREA_CAUCASUS_REGION = 124;
513
	private static int AREA_EGYPT = 125;
514
	private static int AREA_GEORGIA = 126;
515
	private static int AREA_ISRAEL_JORDAN = 127;
516
	private static int AREA_ISRAEL = 128;
517
	private static int AREA_JORDAN = 129;
518
	private static int AREA_LEBANON = 130;
519
	private static int AREA_LIBYA = 131;
520
	private static int AREA_LEBANON_SYRIA = 132;
521
	private static int AREA_MOROCCO = 133;
522
	private static int AREA_NORTH_CAUCASUS = 134;
523
	private static int AREA_SINAI = 135;
524
	private static int AREA_SYRIA = 136;
525
	private static int AREA_TUNISIA = 137;
526
	private static int AREA_ASIATIC_TURKEY = 138;
527
	private static int AREA_TURKEY = 139;
528
	private static int AREA_NORTHERN_AFRICA = 140;
529
	private static int AREA_AFRO_TROPICAL_REGION = 141;
530
	private static int AREA_AUSTRALIAN_REGION = 142;
531
	private static int AREA_EAST_PALAEARCTIC = 143;
532
	private static int AREA_NEARCTIC_REGION = 144;
533
	private static int AREA_NEOTROPICAL_REGION = 145;
534
	private static int AREA_NEAR_EAST = 146;
535
	private static int AREA_ORIENTAL_REGION = 147;
536
	private static int AREA_EUROPEAN_MARINE_WATERS = 148;
537
	private static int AREA_MEDITERRANEAN_SEA = 149;
538
	private static int AREA_WHITE_SEA = 150;
539
	private static int AREA_NORTH_SEA = 151;
540
	private static int AREA_BALTIC_SEA = 152;
541
	private static int AREA_BLACK_SEA = 153;
542
	private static int AREA_BARENTSZ_SEA = 154;
543
	private static int AREA_CASPIAN_SEA = 155;
544
	private static int AREA_PORTUGUESE_EXCLUSIVE_ECONOMIC_ZONE = 156;
545
	private static int AREA_BELGIAN_EXCLUSIVE_ECONOMIC_ZONE = 157;
546
	private static int AREA_FRENCH_EXCLUSIVE_ECONOMIC_ZONE = 158;
547
	private static int AREA_ENGLISH_CHANNEL = 159;
548
	private static int AREA_ADRIATIC_SEA = 160;
549
	private static int AREA_BISCAY_BAY = 161;
550
	private static int AREA_DUTCH_EXCLUSIVE_ECONOMIC_ZONE = 162;
551
	private static int AREA_UNITED_KINGDOM_EXCLUSIVE_ECONOMIC_ZONE = 163;
552
	private static int AREA_SPANISH_EXCLUSIVE_ECONOMIC_ZONE = 164;
553
	private static int AREA_EGYPTIAN_EXCLUSIVE_ECONOMIC_ZONE = 165;
554
	private static int AREA_GREEK_EXCLUSIVE_ECONOMIC_ZONE = 166;
555
	private static int AREA_TIRRENO_SEA = 167;
556
	private static int AREA_ICELANDIC_EXCLUSIVE_ECONOMIC_ZONE = 168;
557
	private static int AREA_IRISH_EXCLUSIVE_ECONOMIC_ZONE = 169;
558
	private static int AREA_IRISH_SEA = 170;
559
	private static int AREA_ITALIAN_EXCLUSIVE_ECONOMIC_ZONE = 171;
560
	private static int AREA_NORWEGIAN_SEA = 172;
561
	private static int AREA_MOROCCAN_EXCLUSIVE_ECONOMIC_ZONE = 173;
562
	private static int AREA_NORWEGIAN_EXCLUSIVE_ECONOMIC_ZONE = 174;
563
	private static int AREA_SKAGERRAK = 175;
564
	private static int AREA_TUNISIAN_EXCLUSIVE_ECONOMIC_ZONE = 176;
565
	private static int AREA_WADDEN_SEA = 177;
566
	private static int AREA_BELT_SEA = 178;
567
	private static int AREA_MARMARA_SEA = 179;
568
	private static int AREA_SEA_OF_AZOV = 180;
569
	private static int AREA_AEGEAN_SEA = 181;
570
	private static int AREA_BULGARIAN_EXCLUSIVE_ECONOMIC_ZONE = 182;
571
	private static int AREA_SOUTH_BALTIC_PROPER = 183;
572
	private static int AREA_BALTIC_PROPER = 184;
573
	private static int AREA_NORTH_BALTIC_PROPER = 185;
574
	private static int AREA_ARCHIPELAGO_SEA = 186;
575
	private static int AREA_BOTHNIAN_SEA = 187;
576
	private static int AREA_GERMAN_EXCLUSIVE_ECONOMIC_ZONE = 188;
577
	private static int AREA_SWEDISH_EXCLUSIVE_ECONOMIC_ZONE = 189;
578
	private static int AREA_UKRAINIAN_EXCLUSIVE_ECONOMIC_ZONE = 190;
579
	private static int AREA_MADEIRAN_EXCLUSIVE_ECONOMIC_ZONE = 191;
580
	private static int AREA_LEBANESE_EXCLUSIVE_ECONOMIC_ZONE = 192;
581
	private static int AREA_SPANISH_EXCLUSIVE_ECONOMIC_ZONE_MEDITERRANEAN_PART = 193;
582
	private static int AREA_ESTONIAN_EXCLUSIVE_ECONOMIC_ZONE = 194;
583
	private static int AREA_CROATIAN_EXCLUSIVE_ECONOMIC_ZONE = 195;
584
	private static int AREA_BALEAR_SEA = 196;
585
	private static int AREA_TURKISH_EXCLUSIVE_ECONOMIC_ZONE = 197;
586
	private static int AREA_DANISH_EXCLUSIVE_ECONOMIC_ZONE = 198;
587
	private static int AREA_TRANSCAUCASUS = 199;
588

    
589
	private static int AREA_GEORGIA_G = 200;
590
	private static int AREA_ABKHAZIA = 201;
591
	private static int AREA_ADZARIA = 202;
592

    
593
	private static int AREA_UNITED_KINGDOM = 203;
594
	private static int AREA_DENMARK_COUNTRY = 204;
595
	private static int AREA_TURKEY_COUNTRY = 205;
596
	private static int AREA_SPAIN_COUNTRY = 206;
597
	private static int AREA_GREECE_COUNTRY = 207;
598
	private static int AREA_PORTUGAL_COUNTRY = 208;
599
	//continued ERMS areas without variables
600
	//...
601
	private static int AREA_WALES = 293;
602

    
603
	//new E+M areas
604
	private static int AREA_SERBIA = 294;
605
	private static int AREA_KOSOVO = 295;
606

    
607

    
608
	//FauEu area UUIDs
609
    private static UUID uuidAreaAD = UUID.fromString("38dd31d2-8275-4b05-8b85-eb71a390d67f");
610
    private static UUID uuidAreaAFR = UUID.fromString("c3123386-51a4-42a4-9ff4-b3905b18a83c");//x
611
    private static UUID uuidAreaAL = UUID.fromString("84c54f15-fc90-44bb-a45d-26b7daa26ceb");
612
    private static UUID uuidAreaAT = UUID.fromString("d285e4a5-d027-4610-a4ff-f5e6dd16cdc3");
613
    private static UUID uuidAreaAUS = UUID.fromString("930e6455-de5e-4002-bfc3-45eecd07e4f3");//x
614
    private static UUID uuidAreaBA = UUID.fromString("946a06ea-200f-409e-bb2f-05e64e55ed41");
615
    private static UUID uuidAreaBE = UUID.fromString("f914f7fd-d5a3-4165-8409-004f197ae4e9");
616
    private static UUID uuidAreaBG = UUID.fromString("9586daca-a739-4d28-836e-6d15861375e1");
617
    private static UUID uuidAreaBY = UUID.fromString("b6f94a56-990d-41da-8e92-abf757afeca1");
618
    private static UUID uuidAreaCH = UUID.fromString("cccc1da5-6a0e-47c2-900e-e274fd593ff0");
619
    private static UUID uuidAreaCY = UUID.fromString("78950366-3f15-48bb-80c9-8b24afedcd3c");
620
    private static UUID uuidAreaCZ = UUID.fromString("d1221dbc-a7c5-4805-b7c8-15ae56557825");
621
    private static UUID uuidAreaDE = UUID.fromString("6f31223e-9a10-4c97-b482-85d96f195a23");
622
    private static UUID uuidAreaDK_DEN = UUID.fromString("4ed51fa9-f89a-47c8-a9ce-43d462f74c53");
623
    private static UUID uuidAreaDK_FOR = UUID.fromString("272874cf-b6f7-4805-8a0c-1a0efbbf0a21");
624
    private static UUID uuidAreaEE = UUID.fromString("1472705d-c94e-41e8-9482-adb46f201f71");
625
    private static UUID uuidAreaEPA = UUID.fromString("2f162235-6c5a-4ad4-8ba0-8dca28826dab");//x
626
    private static UUID uuidAreaES_BAL = UUID.fromString("d5466ee2-38fa-47e8-8109-008b71a2f47b");
627
    private static UUID uuidAreaES_CNY = UUID.fromString("1f19cdaa-af1e-406c-bb58-25f17ee00228");
628
    private static UUID uuidAreaES_SPA = UUID.fromString("d3cc7b05-b506-44b7-a49a-77d36974bd5f");
629
    private static UUID uuidAreaFI = UUID.fromString("93d6e2ba-308b-4d57-851c-94583e139806");
630
    private static UUID uuidAreaFR_COR = UUID.fromString("f7088b27-805f-46df-916f-eeed47a2e336");
631
    private static UUID uuidAreaFR_FRA = UUID.fromString("83d2df98-c0b4-4ad8-9a02-7cdfcfa74371");
632
    private static UUID uuidAreaGB_CI = UUID.fromString("a97807d0-e7e2-4ee0-8567-07f3a72d91bb");
633
    private static UUID uuidAreaGB_GI = UUID.fromString("4441b42a-7c9f-4a39-89d6-5c9c9dab9c05");
634
    private static UUID uuidAreaGB_GRB = UUID.fromString("94561875-19a6-4bf4-ade7-340c245ffd67");
635
    private static UUID uuidAreaGB_NI = UUID.fromString("791be300-6e86-4253-b1ba-aef46ea6bfb9");
636
    private static UUID uuidAreaGR_AEG = UUID.fromString("efb2f01a-f01e-4da2-ba02-464b0e1687e5");//x
637
    private static UUID uuidAreaGR_CYC = UUID.fromString("f9ad21b1-c9ed-4062-9086-cba6e6ef353b");//x
638
    private static UUID uuidAreaGR_DOD = UUID.fromString("7a84feae-9d93-4408-8122-e82b9485fc0f");//x
639
    private static UUID uuidAreaGR_GRC = UUID.fromString("a392dbac-8671-40e6-95c7-a0d2db8f7d9c");//x
640
    private static UUID uuidAreaGR_KRI = UUID.fromString("ed8e7bcd-2267-4953-b422-bc2ff45238f7");//x
641
    private static UUID uuidAreaHR = UUID.fromString("83323e5b-8a62-4784-956a-5f21ddc853b9");
642
    private static UUID uuidAreaHU = UUID.fromString("ab6985e7-e718-4bcb-bc84-55e563870998");
643
    private static UUID uuidAreaIE = UUID.fromString("6a623016-2cd7-4391-8bc9-ae8af50060b4");
644
    private static UUID uuidAreaIS = UUID.fromString("b8469350-7c87-4202-9cb1-5f0ad11ec89c");
645
    private static UUID uuidAreaIT_ITA = UUID.fromString("43df04d6-90b4-4cf4-8dfc-f60ae921f92c");
646
    private static UUID uuidAreaIT_SAR = UUID.fromString("f68d9695-238d-4684-901a-f4bbc24813ee");
647
    private static UUID uuidAreaIT_SI = UUID.fromString("1889a571-d12a-48f1-a49f-112e60c699ef");
648
    private static UUID uuidAreaLI = UUID.fromString("ebad24b5-559e-46c4-8b0d-87107e05169e");
649
    private static UUID uuidAreaLT = UUID.fromString("d00df2a8-8d5d-4c36-b3a2-4afc9006be70");
650
    private static UUID uuidAreaLU = UUID.fromString("65bbbb63-3351-4fda-a8f8-50557bc34e0d");
651
    private static UUID uuidAreaLV = UUID.fromString("997d97ea-4678-4e01-9a81-518c09da7d7c");
652
    private static UUID uuidAreaMC = UUID.fromString("0debabad-e7e2-4aad-b959-876d3d85a4b1");
653
    private static UUID uuidAreaMD = UUID.fromString("7a4ffe59-f8d6-4a58-bb4e-449fbe8420b3");
654
    private static UUID uuidAreaMK = UUID.fromString("40140714-6214-4338-bc45-f85455f7eaed");
655
    private static UUID uuidAreaMT = UUID.fromString("b36c2f47-47d5-497f-9235-2faf0d9a6e6c");
656
    private static UUID uuidAreaNAF = UUID.fromString("e3b2193d-e23a-47a7-9bf5-7f7eebe61afb");//x
657
    private static UUID uuidAreaNEA = UUID.fromString("d6082e94-7289-45a3-a298-5cb730cfbd7f");//x
658
    private static UUID uuidAreaNEO = UUID.fromString("7a530ae7-d070-49aa-8496-7b06c4ed735b");//x
659
    private static UUID uuidAreaNL = UUID.fromString("7b74033f-ada3-4956-87b7-ec9bf0cb4c76");
660
    private static UUID uuidAreaNO_NOR = UUID.fromString("11b26fc9-3da4-4323-8b03-e960e8b1c914");
661
    private static UUID uuidAreaNO_SVA = UUID.fromString("9a3fe056-2011-4b02-a416-59de00eaf533");
662
    private static UUID uuidAreaNRE = UUID.fromString("5e005e59-b313-4c5b-8702-c2f88317db25");//x
663
    private static UUID uuidAreaORR = UUID.fromString("2047d0dd-12dc-4454-8344-07ad52fa0af0");//x
664
    private static UUID uuidAreaPL = UUID.fromString("68edc557-dbed-494e-9549-6746f11fb904");
665
    private static UUID uuidAreaPT_AZO = UUID.fromString("6f5e4eb5-83c8-4baf-99f2-cb6e25d8ac9d");
666
    private static UUID uuidAreaPT_MDR = UUID.fromString("97bed937-f4ad-4b42-ba0c-8832816fa234");
667
    private static UUID uuidAreaPT_POR = UUID.fromString("09107b85-2bdb-4534-a51c-8d02cdd71590");
668
    private static UUID uuidAreaPT_SEL = UUID.fromString("e067287c-50c6-4e54-9859-91aa15aa289a");
669
    private static UUID uuidAreaRO = UUID.fromString("de3e2ca8-d2ea-4c1f-8a19-a7a0b5daf39d");
670
    private static UUID uuidAreaRU_FJL = UUID.fromString("2b79434b-df7d-4dc5-996f-1ca4227f6e0e");//x
671
    private static UUID uuidAreaRU_KGD = UUID.fromString("227a661b-91de-489c-88ed-6b72f78481f0");
672
    private static UUID uuidAreaRU_NOZ = UUID.fromString("2b26f68a-fdac-41ab-bce0-105b24d7eb26");//x
673
    private static UUID uuidAreaRU_RUC = UUID.fromString("235748eb-9eef-48a8-9b9a-c4abd00b6244");
674
    private static UUID uuidAreaRU_RUE = UUID.fromString("5ad5b07e-518f-44ee-ac96-c7608d93e757");
675
    private static UUID uuidAreaRU_RUN = UUID.fromString("05d35653-9f67-442c-8d99-4a7ae68cf5d1");
676
    private static UUID uuidAreaRU_RUS = UUID.fromString("98b00cf8-7bd6-4f44-885c-0927bbc1d456");
677
    private static UUID uuidAreaRU_RUW = UUID.fromString("ae84bc08-957a-4c62-a828-1fb3fc2f0c3e");
678
    private static UUID uuidAreaSE = UUID.fromString("8ff37027-4832-4ce1-9f25-e21eaf26299c");
679
    private static UUID uuidAreaSI = UUID.fromString("0b76b448-5564-415c-bc18-727c37e62bf1");
680
    private static UUID uuidAreaSK = UUID.fromString("e966cd7c-3e68-4153-887b-54920eb6eb47");
681
    private static UUID uuidAreaSM = UUID.fromString("c40b8a71-c50c-4636-96de-be0bb48ed025");
682
    private static UUID uuidAreaTR_TUE = UUID.fromString("807317b3-746b-4916-9441-d8086d0d1cb1");
683
    private static UUID uuidAreaUA = UUID.fromString("2f80440d-cb03-499c-a829-c4ac4c6608d3");//x
684
    private static UUID uuidAreaVA = UUID.fromString("cd256143-1b74-4a7d-998f-ba0a9c01bb3e");
685
    private static UUID uuidAreaYU = UUID.fromString("cd80a852-1993-465a-b0e3-8c73218d4d90");
686

    
687

    
688
	// OccurrenceStatus
689
	private static int STATUS_PRESENT = 1;
690
	public static int STATUS_ABSENT = 2;
691
	public static int STATUS_NATIVE = 3;
692
	public static int STATUS_INTRODUCED = 4;
693
	public static int STATUS_NATURALISED = 5;
694
	private static int STATUS_INVASIVE = 6;
695
	public static int STATUS_MANAGED = 7;
696
	public static int STATUS_DOUBTFUL = 8;
697

    
698
	private final Map<String, Integer> tdwgKeyMap = new HashMap<>();
699
	private final Map<Integer, String> areaCacheMap = new HashMap<>();
700
	private final Map<Integer, String> languageCacheMap  = new HashMap<>();
701
	private static final Map<String,Integer> languageCodeToKeyMap = new HashMap<>();
702

    
703
	private final Map<Integer, String> featureCacheMap  = new HashMap<>();
704
	private final Map<Integer, String> nameStatusCacheMap  = new HashMap<>();
705
	private final Map<Integer, String> qualityStatusCacheMap  = new HashMap<>();
706
	private final Map<Integer, String> taxonStatusCacheMap  = new HashMap<>();
707
	private final Map<Integer, String> taxRelQualifierCacheMap  = new HashMap<>();
708
	private final Map<Integer, String> taxRelZooQualifierCacheMap  = new HashMap<>();
709
	private final Map<Integer, String> sourceUseCacheMap  = new HashMap<>();
710
	private final Map<Integer, String> fossilStatusCacheMap  = new HashMap<>();
711
	private final Map<Integer, String> typeDesigStatusCacheMap  = new HashMap<>();
712
	private final Map<Integer, String> sourceCategoryCacheMap  = new HashMap<>();
713
	private final Map<Integer, String> occurrenceStatusCacheMap  = new HashMap<>();
714
	private final Map<Integer, Map<Integer, String>> rankCacheMap  = new  HashMap<>();
715
	private final Map<Integer, Map<Integer, String>> rankAbbrevCacheMap  = new  HashMap<>();
716

    
717

    
718
	private final Source destination;
719

    
720
	public PesiTransformer(Source destination) {
721
		super();
722
		this.destination = destination;
723
		fillMaps();
724
	}
725

    
726
	private void fillMaps() {
727
		try {
728
		    //TDWG
729
			String sql = " SELECT AreaId, AreaName, AreaTdwgCode, AreaEmCode, AreaFaEuCode FROM Area";
730
			ResultSet rs = destination.getResultSet(sql);
731
			while (rs.next()){
732
				String tdwg = rs.getString("AreaTdwgCode");
733
				Integer id = rs.getInt("AreaId");
734
				String label = rs.getString("AreaName");
735

    
736
				if (StringUtils.isNotBlank(tdwg)){
737
					this.tdwgKeyMap.put(tdwg, id);
738
				}
739
				this.areaCacheMap.put(id, label);
740
			}
741

    
742
			//rankCache
743
			sql = " SELECT KingdomId, RankId, Rank, RankAbbrev, Kingdom  FROM Rank";
744
			rs = destination.getResultSet(sql);
745
			while (rs.next()){
746
				String rank = rs.getString("Rank");
747
				String abbrev = rs.getString("RankAbbrev");
748
				Integer rankId = rs.getInt("RankId");
749
				Integer kingdomId = rs.getInt("KingdomId");
750
				String kingdom = rs.getString("Kingdom");
751

    
752
				//rank str
753
				Map<Integer, String> kingdomMap = rankCacheMap.get(kingdomId);
754
				if (kingdomMap == null){
755
					kingdomMap = new HashMap<>();
756
					rankCacheMap.put(kingdomId, kingdomMap);
757
				}
758
				kingdomMap.put(rankId, rank);
759

    
760
				if (rank.equals("Kingdom")){
761
				    pesiKingdomMap.put(kingdom, kingdomId);
762
				}
763

    
764
				//rank abbrev
765
				Map<Integer, String> kingdomAbbrevMap = rankAbbrevCacheMap.get(kingdomId);
766
				if (kingdomAbbrevMap == null){
767
					kingdomAbbrevMap = new HashMap<>();
768
					rankAbbrevCacheMap.put(kingdomId, kingdomAbbrevMap);
769
				}
770
				if (StringUtils.isNotBlank(abbrev)){
771
					kingdomAbbrevMap.put(rankId, abbrev);
772
				}
773
			}
774

    
775
			//languageCache
776
			fillSingleMap(languageCacheMap, "Language");
777

    
778
			//feature / note category
779
			fillSingleMap(featureCacheMap, "NoteCategory");
780

    
781
			//nameStatusCache
782
			fillSingleMap(nameStatusCacheMap, "NameStatus", "NomStatus");
783

    
784
			//qualityStatusCache
785
			fillSingleMap(qualityStatusCacheMap, "QualityStatus");
786

    
787
			//taxonStatusCache
788
			fillSingleMap(taxonStatusCacheMap, "TaxonStatus", "Status");
789

    
790
			//sourceUse
791
			fillSingleMap(sourceUseCacheMap, "SourceUse");
792

    
793
			//fossil status
794
			fillSingleMap(fossilStatusCacheMap, "FossilStatus");
795

    
796
			//fossil status
797
			fillSingleMap(typeDesigStatusCacheMap, "FossilStatus");
798

    
799
			//fossil status
800
			fillSingleMap(occurrenceStatusCacheMap, "OccurrenceStatus");
801

    
802
			//source category
803
			fillSingleMap(sourceCategoryCacheMap, "SourceCategory", "Category", "SourceCategoryId");
804

    
805
			//RelTaxonQualifier
806
			sql = " SELECT QualifierId, Qualifier, ZoologQualifier FROM RelTaxonQualifier ";
807
			rs = destination.getResultSet(sql);
808
			while (rs.next()){
809
				Integer key = rs.getInt("QualifierId");
810
				String cache = rs.getString("Qualifier");
811
				if (StringUtils.isNotBlank(cache)){
812
					this.taxRelQualifierCacheMap.put(key, cache);
813
				}
814
				String zoologCache = rs.getString("ZoologQualifier");
815
				if (StringUtils.isNotBlank(zoologCache)){
816
					this.taxRelZooQualifierCacheMap.put(key, zoologCache);
817
				}
818
			}
819

    
820
			//language code map
821
			sql = " SELECT LanguageId, Language, ISO639_1, ISO639_2, ISO639_3 FROM Language";
822
			rs = destination.getResultSet(sql);
823
			while (rs.next()){
824
                Integer id = rs.getInt("LanguageId");
825
                Integer oldId;
826
                String iso639_1 = rs.getString("ISO639_1");
827
                if (StringUtils.isNotBlank(iso639_1)){
828
                    oldId = languageCodeToKeyMap.put(iso639_1, id);
829
                    checkOldId(id, oldId, iso639_1);
830
                }
831
                String iso639_2 = rs.getString("ISO639_2");
832
                if (StringUtils.isNotBlank(iso639_2)){
833
                    oldId = languageCodeToKeyMap.put(iso639_2, id);
834
                    checkOldId(id, oldId, iso639_1);
835
                }
836
                String iso639_3 = rs.getString("ISO639_3");
837
                if (StringUtils.isNotBlank(iso639_3)){
838
                    oldId = languageCodeToKeyMap.put(iso639_3, id);
839
                    checkOldId(id, oldId, iso639_1);
840
                }
841

    
842
            }
843
			rs = null;
844
		} catch (Exception e) {
845
			logger.error("Exception when trying to read area map", e);
846
			e.printStackTrace();
847
		}
848
	}
849

    
850
    private void checkOldId(Integer id, Integer oldId, String isoCode) {
851
        if (oldId != null && !oldId.equals(id)){
852
            logger.warn("Language code " + isoCode + " exists for >1 language IDs. This should not happen.");
853
        }
854
    }
855

    
856
    private void fillSingleMap(Map<Integer, String> map, String tableName) throws SQLException {
857
		fillSingleMap(map, tableName, tableName,  tableName + "Id");
858
	}
859

    
860
	private void fillSingleMap(Map<Integer, String> map, String tableName, String attr) throws SQLException {
861
			fillSingleMap(map, tableName, attr,  attr + "Id");
862
	}
863

    
864
	private void fillSingleMap(Map<Integer, String> map, String tableName, String attr, String idAttr) throws SQLException {
865
		String sql;
866
		ResultSet rs;
867
		sql = " SELECT %s, %s FROM %s ";
868
		sql = String.format(sql, idAttr, attr, tableName);
869
		rs = destination.getResultSet(sql);
870
		while (rs.next()){
871
			Integer key = rs.getInt(idAttr);
872
			String cache = rs.getString(attr);
873
			if (StringUtils.isNotBlank(cache)){
874
				map.put(key, cache);
875
			}
876
		}
877
	}
878

    
879
	/**
880
	 * Converts the databaseString to its abbreviation if its known.
881
	 * Otherwise the databaseString is returned.
882
	 * @param databaseString
883
	 * @return
884
	 */
885
	public static String databaseString2Abbreviation(String databaseString) {
886
		String result = databaseString;
887
		if (databaseString.equals("Fauna Europaea database")) {
888
			result = "FaEu";
889
		}
890
		return result;
891
	}
892

    
893
	/**
894
	 * Returns the OccurrenceStatusId for a given PresenceAbsenceTerm.
895
	 * @param term
896
	 * @return
897
	 * @throws UnknownCdmTypeException
898
	 */
899
	public static Integer presenceAbsenceTerm2OccurrenceStatusId(PresenceAbsenceTerm term) {
900
		Integer result = null;
901
		if (term == null){
902
			return null;
903
		//present
904
		}else if (term.isInstanceOf(PresenceAbsenceTerm.class)) {
905
			PresenceAbsenceTerm presenceTerm = CdmBase.deproxy(term, PresenceAbsenceTerm.class);
906
			if (presenceTerm.equals(PresenceAbsenceTerm.PRESENT()) ||
907
					presenceTerm.equals(PresenceAbsenceTerm.INTRODUCED_DOUBTFULLY_INTRODUCED()) ||
908
					presenceTerm.equals(PresenceAbsenceTerm.NATIVE_DOUBTFULLY_NATIVE())) {
909
				result = STATUS_PRESENT;
910
			} else if (presenceTerm.equals(PresenceAbsenceTerm.NATIVE())) {
911
				result = STATUS_NATIVE;
912
			} else if (presenceTerm.equals(PresenceAbsenceTerm.INTRODUCED()) ||
913
					presenceTerm.equals(PresenceAbsenceTerm.CASUAL()) ||
914
					presenceTerm.equals(PresenceAbsenceTerm.INTRODUCED_UNCERTAIN_DEGREE_OF_NATURALISATION())) {
915
				result = STATUS_INTRODUCED;
916
			} else if (presenceTerm.equals(PresenceAbsenceTerm.NATURALISED())
917
					|| presenceTerm.equals(PresenceAbsenceTerm.NATURALISED())) {
918
				result = STATUS_NATURALISED;
919
			} else if (presenceTerm.equals(PresenceAbsenceTerm.INVASIVE())) {
920
				result = STATUS_INVASIVE;
921
			} else if (presenceTerm.equals(PresenceAbsenceTerm.CULTIVATED())) {
922
				result = STATUS_MANAGED;
923
			} else if (presenceTerm.equals(PresenceAbsenceTerm.PRESENT_DOUBTFULLY())||
924
					presenceTerm.equals(PresenceAbsenceTerm.INTRODUCED_PRESENCE_QUESTIONABLE()) ||
925
					presenceTerm.equals(PresenceAbsenceTerm.NATIVE_PRESENCE_QUESTIONABLE() )) {
926
				result = STATUS_DOUBTFUL;
927
			//absent
928
			}else if (presenceTerm.equals(PresenceAbsenceTerm.ABSENT()) || presenceTerm.equals(PresenceAbsenceTerm.NATIVE_FORMERLY_NATIVE()) ||
929
					presenceTerm.equals(PresenceAbsenceTerm.CULTIVATED_REPORTED_IN_ERROR()) || presenceTerm.equals(PresenceAbsenceTerm.INTRODUCED_REPORTED_IN_ERROR()) ||
930
					presenceTerm.equals(PresenceAbsenceTerm.INTRODUCED_FORMERLY_INTRODUCED()) || presenceTerm.equals(PresenceAbsenceTerm.NATIVE_REPORTED_IN_ERROR() ) ) {
931
				result = STATUS_ABSENT;
932
			} else {
933
				logger.error("PresenceAbsenceTerm could not be translated to datawarehouse occurrence status id: " + presenceTerm.getLabel());
934
			}
935
		}
936
		return result;
937
	}
938

    
939
	@Override
940
	public String getCacheByPresenceAbsenceTerm(PresenceAbsenceTerm status) throws UndefinedTransformerMethodException {
941
		if (status == null){
942
			return null;
943
		}else{
944
			return this.occurrenceStatusCacheMap.get(getKeyByPresenceAbsenceTerm(status));
945
		}
946
	}
947

    
948
	@Override
949
	public Object getKeyByPresenceAbsenceTerm(PresenceAbsenceTerm status) throws UndefinedTransformerMethodException {
950
		return presenceAbsenceTerm2OccurrenceStatusId(status);
951
	}
952

    
953
	@Override
954
	public String getCacheByNamedArea(NamedArea namedArea) throws UndefinedTransformerMethodException {
955
		NamedArea area = CdmBase.deproxy(namedArea);
956
		if (area == null){
957
			return null;
958
		}else{
959
			return this.areaCacheMap.get(getKeyByNamedArea(area));
960
		}
961
	}
962

    
963
	@Override
964
	public Object getKeyByNamedArea(NamedArea area) throws UndefinedTransformerMethodException {
965
		NamedArea namedArea = CdmBase.deproxy(area);
966

    
967
		if (area == null) {
968
			return null;
969
		//TDWG areas
970
		} else if (area.getVocabulary().getUuid().equals(NamedArea.uuidTdwgAreaVocabulary)) {
971
			String abbrevLabel = namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel();
972
			Integer result = this.tdwgKeyMap.get(abbrevLabel);
973
			if (result == null){
974
				logger.warn("Unknown TDWGArea: " + area.getTitleCache());
975
			}
976
			return result;
977
		//countries
978
		}else if (namedArea.isInstanceOf(Country.class)){
979
			if (namedArea.equals(Country.UKRAINE())) { return AREA_UKRAINE_INCLUDING_CRIMEA; }
980
			else if (namedArea.equals(Country.AZERBAIJANREPUBLICOF())) { return AREA_AZERBAIJAN_INCLUDING_NAKHICHEVAN; }
981
			else if (namedArea.equals(Country.GEORGIA())) { return AREA_GEORGIA; }
982
			else if (namedArea.equals(Country.RUSSIANFEDERATION())) { return AREA_THE_RUSSIAN_FEDERATION; }
983
			else if (namedArea.equals(Country.UNITEDKINGDOMOFGREATBRITAINANDNORTHERNIRELAND())) { return AREA_UNITED_KINGDOM; }
984
			else if (namedArea.equals(Country.DENMARKKINGDOMOF())) { return AREA_DENMARK_COUNTRY; }
985
			else if (namedArea.equals(Country.TURKEYREPUBLICOF())) { return AREA_TURKEY_COUNTRY; }
986
			else {
987
				logger.warn("Unknown Country: " + area.getTitleCache());
988
			}
989

    
990
		}else if (area.getVocabulary().getUuid().equals(BerlinModelTransformer.uuidVocEuroMedAreas)){
991
			if (namedArea.getUuid().equals(BerlinModelTransformer.uuidEM)) {
992
//				logger.warn("E+M area not available in PESI");
993
				return null;
994
			}
995
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidEUR)) { logger.warn("EUR area not available in PESI"); return null; }
996
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAb)) { return AREA_AZERBAIJAN_INCLUDING_NAKHICHEVAN; }
997
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAb_A)) { return AREA_AZERBAIJAN; }
998
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAb_N)) { return AREA_NAKHICHEVAN; }
999
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAE)) { return AREA_EAST_AEGEAN_ISLANDS; }
1000
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAE_G)) { return AREA_GREEK_EAST_AEGEAN_ISLANDS; }
1001
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAE_T)) { return AREA_TURKISH_EAST_AEGEAN_ISLANDS; }
1002
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAg)) { return AREA_ALGERIA; }
1003
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAl)) { return AREA_ALBANIA; }
1004
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAr)) { return AREA_ARMENIA; }
1005
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAu)) { return AREA_AUSTRIA_WITH_LIECHTENSTEIN; }
1006
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAu_A)) { return AREA_AUSTRIA; }
1007
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAu_L)) { return AREA_LIECHTENSTEIN; }
1008
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz)) { return AREA_AZORES; }
1009
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_C)) { return AREA_CORVO; }
1010
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_F)) { return AREA_FAIAL; }
1011
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_G)) { return AREA_GRACIOSA; }
1012
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_J)) { return AREA_SAO_JORGE; }
1013
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_L)) { return AREA_FLORES; }
1014
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_M)) { return AREA_SAO_MIGUEL; }
1015
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_P)) { return AREA_PICO; }
1016
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_S)) { return AREA_SANTA_MARIA; }
1017
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidAz_T)) { return AREA_TERCEIRA; }
1018
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBe)) { return AREA_BELGIUM_WITH_LUXEMBOURG; }
1019
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBe_B)) { return AREA_BELGIUM; }
1020
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBe_L)) { return AREA_LUXEMBOURG; }
1021
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBH)) { return AREA_BOSNIA_HERZEGOVINA; }
1022
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBl)) { return AREA_BALEARES; }
1023
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBl_I)) { return AREA_IBIZA_WITH_FORMENTERA; }
1024
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBl_M)) { return AREA_MALLORCA; }
1025
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBl_N)) { return AREA_MENORCA; }
1026
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBr)) { return AREA_GREAT_BRITAIN; }
1027
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBt)) { return AREA_BALTIC_STATES_ESTONIA_LATVIA_LITHUANIA_AND_KALININGRAD_REGION; }
1028
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBu)) { return AREA_BULGARIA; }
1029
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidBy)) { return AREA_BELARUS; }
1030
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCa)) { return AREA_CANARY_ISLANDS; }
1031
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCa_C)) { return AREA_GRAN_CANARIA; }
1032
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCa_F)) { return AREA_FUERTEVENTURA_WITH_LOBOS; }
1033
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCa_G)) { return AREA_GOMERA; }
1034
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCa_H)) { return AREA_HIERRO; }
1035
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCa_L)) { return AREA_LANZAROTE_WITH_GRACIOSA; }
1036
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCa_P)) { return AREA_LA_PALMA; }
1037
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCa_T)) { return AREA_TENERIFE; }
1038
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCc)) { return AREA_CAUCASUS_REGION; }
1039
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCg)) { return AREA_MONTENEGRO; }
1040
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCo)) { return AREA_CORSE; }
1041
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCr)) { return AREA_CRETE_WITH_KARPATHOS_KASOS_AND_GAVDHOS; }
1042
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCs)) { return AREA_CZECH_REPUBLIC; }
1043
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCt)) { return AREA_CROATIA; }
1044
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCy)) { return AREA_CYPRUS; }
1045
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidCz)) { return AREA_FORMER_CZECHOSLOVAKIA; }
1046
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidDa)) { return AREA_DENMARK_WITH_BORNHOLM; }
1047
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidEg)) { return AREA_EGYPT; }
1048
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidEs)) { return AREA_ESTONIA; }
1049
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidFa)) { return AREA_FAROE_ISLANDS; }
1050
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidFe)) { return AREA_FINLAND_WITH_AHVENANMAA; }
1051
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGa)) { return AREA_FRANCE; }
1052
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGa_C)) { return AREA_CHANNEL_ISLANDS; }
1053
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGa_F)) { return AREA_FRENCH_MAINLAND; }
1054
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGa_M)) { return AREA_MONACO; }
1055

    
1056
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGe)) { return AREA_GERMANY; }
1057
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGg)) { return AREA_GEORGIA; }
1058

    
1059
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGg_G)) { return AREA_GEORGIA_G; }
1060
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGg_A)) { return AREA_ABKHAZIA; }
1061
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGg_D)) { return AREA_ADZARIA; }
1062

    
1063
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidGr)) { return AREA_GREECE_WITH_CYCLADES_AND_MORE_ISLANDS; }
1064
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHb)) { return AREA_IRELAND; }
1065
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHb_E)) { return AREA_REPUBLIC_OF_IRELAND; }
1066
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHb_N)) { return AREA_NORTHERN_IRELAND; }
1067
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHe)) { return AREA_SWITZERLAND; }
1068
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHo)) { return AREA_NETHERLANDS; }
1069
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHs)) { return AREA_SPAIN; }
1070
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHs_A)) { return AREA_ANDORRA; }
1071
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHs_G)) { return AREA_GIBRALTAR; }
1072
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHs_S)) { return AREA_KINGDOM_OF_SPAIN; }
1073
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidHu)) { return AREA_HUNGARY; }
1074
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidIJ)) { return AREA_ISRAEL_JORDAN; }
1075
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidIr)) { return AREA_ISRAEL; }
1076
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidIs)) { return AREA_ICELAND; }
1077
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidIt)) { return AREA_ITALY; }
1078
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidIt_I)) { return AREA_ITALIAN_MAINLAND; }
1079
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidIt_S)) { return AREA_SAN_MARINO; }
1080
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidJo)) { return AREA_JORDAN; }
1081
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidJu)) { return AREA_FORMER_JUGOSLAVIA; }
1082
            else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidKo)) { return AREA_KOSOVO; }
1083
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidLa)) { return AREA_LATVIA; }
1084
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidLe)) { return AREA_LEBANON; }
1085
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidLi)) { return AREA_LIBYA; }
1086
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidLS)) { return AREA_LEBANON_SYRIA; }
1087
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidLt)) { return AREA_LITHUANIA; }
1088
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidLu)) { return AREA_PORTUGUESE_MAINLAND; }
1089
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidMa)) { return AREA_MOROCCO; }
1090
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidMd)) { return AREA_MADEIRA_ARCHIPELAGO; }
1091
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidMd_D)) { return AREA_DESERTAS; }
1092
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidMd_M)) { return AREA_MADEIRA; }
1093
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidMd_P)) { return AREA_PORTO_SANTO; }
1094
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidMk)) { return AREA_THE_FORMER_JUGOSLAV_REPUBLIC_OF_MAKEDONIJA; }
1095
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidMo)) { return AREA_MOLDOVA; }
1096
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidNo)) { return AREA_NORWEGIAN_MAINLAND; }
1097
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidPo)) { return AREA_POLAND; }
1098
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf)) { return AREA_THE_RUSSIAN_FEDERATION; }
1099
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf_A)) { return AREA_NOVAYA_ZEMLYA_AND_FRANZ_JOSEPH_LAND; }
1100
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf_C)) { return AREA_CENTRAL_EUROPEAN_RUSSIA; }
1101
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf_CS)) { return AREA_NORTH_CAUCASUS; }
1102
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf_E)) { return AREA_EASTERN_EUROPEAN_RUSSIA; }
1103
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf_K)) { return AREA_KALININGRAD; }
1104
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf_N)) { return AREA_NORTHERN_EUROPEAN_RUSSIA; }
1105
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf_NW)) { return AREA_NORTHWEST_EUROPEAN_RUSSIA; }
1106
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRf_S)) { return AREA_SOUTH_EUROPEAN_RUSSIA; }
1107
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRm)) { return AREA_ROMANIA; }
1108
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRs)) { return AREA_FORMER_USSR; }
1109
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRs_B)) { return AREA_RUSSIA_BALTIC; }
1110
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRs_C)) { return AREA_RUSSIA_CENTRAL; }
1111
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRs_E)) { return AREA_RUSSIA_SOUTHEAST; }
1112
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRs_K)) { return AREA_CRIMEA; }
1113
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRs_N)) { return AREA_RUSSIA_NORTHERN; }
1114
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidRs_W)) { return AREA_RUSSIA_SOUTHWEST; }
1115
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSa)) { return AREA_SARDEGNA; }
1116
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSb)) { return AREA_SVALBARD_WITH_BJORNOYA_AND_JAN_MAYEN; }
1117
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSe)) { return AREA_SERBIA; }
1118
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSg)) { return AREA_SELVAGENS_ISLANDS; }
1119
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSi)) { return AREA_SICILY_WITH_MALTA; }
1120
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSi_M)) { return AREA_MALTA; }
1121
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSi_S)) { return AREA_SICILY; }
1122
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSk)) { return AREA_SLOVAKIA; }
1123
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSl)) { return AREA_SLOVENIA; }
1124
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSM)) { return AREA_SERBIA_WITH_MONTENEGRO; }
1125
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSn)) { return AREA_SINAI; }
1126
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSr)) { return AREA_SERBIA_INCLUDING_VOJVODINA_AND_WITH_KOSOVO; }
1127
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSu)) { return AREA_SWEDEN; }
1128
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidSy)) { return AREA_SYRIA; }
1129
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidTcs)) { return AREA_TRANSCAUCASUS; }
1130
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidTn)) { return AREA_TUNISIA; }
1131
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidTu)) { return AREA_TURKEY; }
1132
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidTu_A)) { return AREA_ASIATIC_TURKEY; }
1133
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidTu_E)) { return AREA_EUROPEAN_TURKEY; }
1134
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidUk)) { return AREA_UKRAINE_INCLUDING_CRIMEA; }
1135
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidUk_K)) { return AREA_CRIMEA; }
1136
			else if (namedArea.getUuid().equals(BerlinModelTransformer.uuidUk_U)) { return AREA_UKRAINE; }
1137
			else {
1138
                logger.warn("Unknown EuroMed distribution area: " + area.getTitleCache());
1139
            }
1140
        }else if (area.getVocabulary().getUuid().equals(BerlinModelTransformer.uuidVocEuroMedCommonNameAreas)){
1141
            UUID uuidArea = namedArea.getUuid();
1142
            if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameAlbania)) { return AREA_ALBANIA; }
1143
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameAndorra)) { return AREA_ANDORRA; }
1144
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameArmenia)) { return AREA_ARMENIA; }
1145
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameAustria)) { return AREA_AUSTRIA; }
1146
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameAzerbaijan)) { return AREA_AZERBAIJAN; }
1147
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameAzores)) { return AREA_AZORES; }
1148
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameBaleares)) { return AREA_BALEARES; }
1149
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameBelarus)) { return AREA_BELARUS; }
1150
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameBelgium)) { return AREA_BELGIUM; }
1151
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameBulgaria)) { return AREA_BULGARIA; }
1152
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameCanaryIs)) { return AREA_CANARY_ISLANDS; }
1153
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameCorse)) { return AREA_CORSE; }
1154
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameCrete)) { return AREA_CRETE; }
1155
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameCrimea)) { return AREA_CRIMEA; }
1156
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameCroatia)) { return AREA_CROATIA; }
1157
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameCzechRepublic)) { return AREA_CZECH_REPUBLIC; }
1158
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameDenmark)) { return AREA_DENMARK_COUNTRY; } //??
1159
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameEastAegeanIslands)) { return AREA_EAST_AEGEAN_ISLANDS; }
1160
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameEstonia)) { return AREA_ESTONIA; }
1161
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameEstonia)) { return AREA_ESTONIA; }
1162
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameFaroer)) { return AREA_FAROE_ISLANDS; }
1163
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameFinland)) { return AREA_FINLAND_WITH_AHVENANMAA; }  //??
1164
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameFinlandWithAhvenanmaa)) { return AREA_FINLAND_WITH_AHVENANMAA; }
1165
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameFrance)) { return AREA_FRANCE; }
1166
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameGeorgia)) { return AREA_GEORGIA; }
1167
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameGermany)) { return AREA_GERMANY; }
1168
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameGreatBritain)) { return AREA_GREAT_BRITAIN; }
1169
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameGreece)) { return AREA_GREECE_COUNTRY; } //??
1170
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameHungary)) { return AREA_HUNGARY; }
1171
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameIbizaWithFormentera)) { return AREA_IBIZA_WITH_FORMENTERA; }
1172
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameIceland)) { return AREA_ICELAND; }
1173
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameIreland)) { return AREA_IRELAND; }
1174
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameIsrael)) { return AREA_ISRAEL; }
1175
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameItaly)) { return AREA_ITALY; }
1176
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameLaPalma)) { return AREA_LA_PALMA; }
1177
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameLativa)) { return AREA_LATVIA; }
1178
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameLebanon)) { return AREA_LEBANON; }
1179
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameLibya)) { return AREA_LIBYA; }
1180
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameLithuania)) { return AREA_LITHUANIA; }
1181
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameMadeira)) { return AREA_MADEIRA; }
1182
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameMallorca)) { return AREA_MALLORCA; }
1183
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameMalta)) { return AREA_MALTA; }
1184
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameMenorca)) { return AREA_MENORCA; }
1185
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameMoldova)) { return AREA_MOLDOVA; }
1186
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameMorocco)) { return AREA_MOROCCO; }
1187
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameNetherlands)) { return AREA_NETHERLANDS; }
1188
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameNorway)) { return AREA_NORWEGIAN_MAINLAND; }
1189
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNamePoland)) { return AREA_POLAND; }
1190
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNamePortugal)) { return AREA_PORTUGAL_COUNTRY; }  //??
1191
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameRomania)) { return AREA_ROMANIA; }
1192
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameRussiaCentral)) { return AREA_RUSSIA_CENTRAL; }
1193
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameRussianFederation)) { return AREA_THE_RUSSIAN_FEDERATION; }
1194
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSardegna)) { return AREA_SARDEGNA; }
1195
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSerbiaMontenegro)) { return AREA_SERBIA_WITH_MONTENEGRO; }
1196
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSlovakia)) { return AREA_SLOVAKIA; }
1197
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSlovenia)) { return AREA_SLOVENIA; }
1198
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSouthEuropeanRussia)) { return AREA_SOUTH_EUROPEAN_RUSSIA; }
1199
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSpain)) { return AREA_SPAIN; }
1200
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSweden)) { return AREA_SWEDEN; }
1201
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSwitzerland)) { return AREA_SWITZERLAND; }
1202
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameSyria)) { return AREA_SYRIA; }
1203
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameTenerife)) { return AREA_TENERIFE; }
1204
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameTurkey)) { return AREA_TURKEY; }  //??
1205
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameUkraine)) { return AREA_UKRAINE; }  //??
1206
            else if (uuidArea.equals(BerlinModelTransformer.uuidEMAreaCommonNameWales)) { return AREA_WALES; }
1207
            else {
1208
                logger.warn("Unknown EuroMed common name area: " + area.getTitleCache());
1209
            }
1210

    
1211
        }else if (area.getVocabulary().getUuid().equals(FaunaEuropaeaTransformer.uuidFauEuArea)){
1212
            UUID uuidArea = namedArea.getUuid();
1213
            if (uuidArea.equals(uuidAreaAD)) { return AREA_ANDORRA; }
1214
            else if (uuidArea.equals(uuidAreaAFR)) { return AREA_AFRO_TROPICAL_REGION; }
1215
            else if (uuidArea.equals(uuidAreaAL)) { return AREA_ALBANIA; }
1216
            else if (uuidArea.equals(uuidAreaAT)) { return AREA_AUSTRIA; }
1217
			else if (uuidArea.equals(uuidAreaAUS)) { return AREA_AUSTRALIAN_REGION; }
1218
			else if (uuidArea.equals(uuidAreaBA)) { return AREA_BOSNIA_HERZEGOVINA; }
1219
			else if (uuidArea.equals(uuidAreaBE)) { return AREA_BELGIUM; }
1220
			else if (uuidArea.equals(uuidAreaBG)) { return AREA_BULGARIA; }
1221
			else if (uuidArea.equals(uuidAreaBY)) { return AREA_BELARUS; }
1222
			else if (uuidArea.equals(uuidAreaCH)) { return AREA_SWITZERLAND; }
1223
			else if (uuidArea.equals(uuidAreaCY)) { return AREA_CYPRUS; }
1224
			else if (uuidArea.equals(uuidAreaCZ)) { return AREA_CZECH_REPUBLIC; }
1225
			else if (uuidArea.equals(uuidAreaDE)) { return AREA_GERMANY; }
1226
			else if (uuidArea.equals(uuidAreaDK_DEN)) { return AREA_DENMARK_WITH_BORNHOLM; }
1227
			else if (uuidArea.equals(uuidAreaDK_FOR)) { return AREA_FAROE_ISLANDS; }
1228
			else if (uuidArea.equals(uuidAreaEE)) { return AREA_ESTONIA; }
1229
			else if (uuidArea.equals(uuidAreaEPA)) { return AREA_EAST_PALAEARCTIC; }
1230
			else if (uuidArea.equals(uuidAreaES_BAL)) { return AREA_BALEARES; }
1231
			else if (uuidArea.equals(uuidAreaES_CNY)) { return AREA_CANARY_ISLANDS; }
1232
			else if (uuidArea.equals(uuidAreaES_SPA)) { return AREA_KINGDOM_OF_SPAIN; }
1233
			else if (uuidArea.equals(uuidAreaFI)) { return AREA_FINLAND_WITH_AHVENANMAA; }
1234
			else if (uuidArea.equals(uuidAreaFR_COR)) { return AREA_CORSE; }
1235
			else if (uuidArea.equals(uuidAreaFR_FRA)) { return AREA_FRENCH_MAINLAND; }
1236
			else if (uuidArea.equals(uuidAreaGB_CI)) { return AREA_CHANNEL_ISLANDS; }
1237
			else if (uuidArea.equals(uuidAreaGB_GI)) { return AREA_GIBRALTAR; }
1238
			else if (uuidArea.equals(uuidAreaGB_GRB)) { return AREA_GREAT_BRITAIN; }
1239
			else if (uuidArea.equals(uuidAreaGB_NI)) { return AREA_NORTHERN_IRELAND; }
1240
			else if (uuidArea.equals(uuidAreaGR_AEG)) { return AREA_NORTH_AEGEAN_ISLANDS; }
1241
			else if (uuidArea.equals(uuidAreaGR_CYC)) { return AREA_CYCLADES_ISLANDS; }
1242
			else if (uuidArea.equals(uuidAreaGR_DOD)) { return AREA_DODECANESE_ISLANDS; }
1243
			else if (uuidArea.equals(uuidAreaGR_KRI)) { return AREA_CRETE; }
1244
			else if (uuidArea.equals(uuidAreaGR_GRC)) { return AREA_GREEK_MAINLAND; }
1245
			else if (uuidArea.equals(uuidAreaHR)) { return AREA_CROATIA; }
1246
			else if (uuidArea.equals(uuidAreaHU)) { return AREA_HUNGARY; }
1247
			else if (uuidArea.equals(uuidAreaIE)) { return AREA_REPUBLIC_OF_IRELAND; }
1248
			else if (uuidArea.equals(uuidAreaIS)) { return AREA_ICELAND; }
1249
			else if (uuidArea.equals(uuidAreaIT_ITA)) { return AREA_ITALIAN_MAINLAND; }
1250
			else if (uuidArea.equals(uuidAreaIT_SAR)) { return AREA_SARDEGNA; }
1251
			else if (uuidArea.equals(uuidAreaIT_SI)) { return AREA_SICILY; }
1252
			else if (uuidArea.equals(uuidAreaLI)) { return AREA_LIECHTENSTEIN; }
1253
			else if (uuidArea.equals(uuidAreaLT)) { return AREA_LITHUANIA; }
1254
			else if (uuidArea.equals(uuidAreaLU)) { return AREA_LUXEMBOURG; }
1255
			else if (uuidArea.equals(uuidAreaLV)) { return AREA_LATVIA; }
1256
			else if (uuidArea.equals(uuidAreaMC)) { return AREA_MONACO; }
1257
			else if (uuidArea.equals(uuidAreaMD)) { return AREA_MOLDOVA; }
1258
			else if (uuidArea.equals(uuidAreaMK)) { return AREA_THE_FORMER_JUGOSLAV_REPUBLIC_OF_MAKEDONIJA; }
1259
			else if (uuidArea.equals(uuidAreaMT)) { return AREA_MALTA; }
1260
			else if (uuidArea.equals(uuidAreaNAF)) { return AREA_NORTHERN_AFRICA; }
1261
			else if (uuidArea.equals(uuidAreaNEA)) { return AREA_NEARCTIC_REGION; }
1262
			else if (uuidArea.equals(uuidAreaNEO)) { return AREA_NEOTROPICAL_REGION; }
1263
			else if (uuidArea.equals(uuidAreaNL)) { return AREA_NETHERLANDS; }
1264
			else if (uuidArea.equals(uuidAreaNO_NOR)) { return AREA_NORWEGIAN_MAINLAND; }
1265
			else if (uuidArea.equals(uuidAreaNO_SVA)) { return AREA_SVALBARD_WITH_BJORNOYA_AND_JAN_MAYEN; }
1266
			else if (uuidArea.equals(uuidAreaNRE)) { return AREA_NEAR_EAST; }
1267
			else if (uuidArea.equals(uuidAreaORR)) { return AREA_ORIENTAL_REGION; }
1268
			else if (uuidArea.equals(uuidAreaPL)) { return AREA_POLAND; }
1269
			else if (uuidArea.equals(uuidAreaPT_AZO)) { return AREA_AZORES; }
1270
			else if (uuidArea.equals(uuidAreaPT_MDR)) { return AREA_MADEIRA; }
1271
			else if (uuidArea.equals(uuidAreaPT_POR)) { return AREA_PORTUGUESE_MAINLAND; }
1272
			else if (uuidArea.equals(uuidAreaPT_SEL)) { return AREA_SELVAGENS_ISLANDS; }
1273
			else if (uuidArea.equals(uuidAreaRO)) { return AREA_ROMANIA; }
1274
			else if (uuidArea.equals(uuidAreaRU_FJL)) { return AREA_FRANZ_JOSEF_LAND; }
1275
			else if (uuidArea.equals(uuidAreaRU_KGD)) { return AREA_KALININGRAD; }
1276
			else if (uuidArea.equals(uuidAreaRU_NOZ)) { return AREA_NOVAYA_ZEMLYA; }
1277
			else if (uuidArea.equals(uuidAreaRU_RUC)) { return AREA_CENTRAL_EUROPEAN_RUSSIA; }
1278
			else if (uuidArea.equals(uuidAreaRU_RUE)) { return AREA_EASTERN_EUROPEAN_RUSSIA; }
1279
			else if (uuidArea.equals(uuidAreaRU_RUN)) { return AREA_NORTHERN_EUROPEAN_RUSSIA; }
1280
			else if (uuidArea.equals(uuidAreaRU_RUS)) { return AREA_SOUTH_EUROPEAN_RUSSIA; }
1281
			else if (uuidArea.equals(uuidAreaRU_RUW)) { return AREA_NORTHWEST_EUROPEAN_RUSSIA; }
1282
			else if (uuidArea.equals(uuidAreaSE)) { return AREA_SWEDEN; }
1283
			else if (uuidArea.equals(uuidAreaSI)) { return AREA_SLOVENIA; }
1284
			else if (uuidArea.equals(uuidAreaSK)) { return AREA_SLOVAKIA; }
1285
			else if (uuidArea.equals(uuidAreaSM)) { return AREA_SAN_MARINO; }
1286
			else if (uuidArea.equals(uuidAreaTR_TUE)) { return AREA_EUROPEAN_TURKEY; }
1287
			else if (uuidArea.equals(uuidAreaUA)) { return AREA_UKRAINE_INCLUDING_CRIMEA; }
1288
			else if (uuidArea.equals(uuidAreaVA)) { return AREA_VATICAN_CITY; }
1289
			else if (uuidArea.equals(uuidAreaYU)) { return AREA_FORMER_JUGOSLAVIA; }
1290

    
1291
        }else if (area.getVocabulary().getUuid().equals(ErmsTransformer.uuidVocErmsAreas)){
1292
			//ERMS
1293
            UUID uuidArea = namedArea.getUuid();
1294
            if (uuidArea.equals(ErmsTransformer.uuidEuropeanMarineWaters)) { return AREA_EUROPEAN_MARINE_WATERS; }
1295
			else if (//(namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("MES") ||   /carefull: NPE!
1296
					(uuidArea.equals(ErmsTransformer.uuidMediterraneanSea))) { return AREA_MEDITERRANEAN_SEA; } // abbreviated label missing
1297
			else if (uuidArea.equals(ErmsTransformer.uuidWhiteSea)) { return AREA_WHITE_SEA; }
1298
			else if (uuidArea.equals(ErmsTransformer.uuidNorthSea)) { return AREA_NORTH_SEA; }
1299
			else if (uuidArea.equals(ErmsTransformer.uuidBalticSea)) { return AREA_BALTIC_SEA; }
1300
			else if (//(namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("BLS") ||   /carefull: NPE!
1301
					(uuidArea.equals(ErmsTransformer.uuidBlackSea))) { return AREA_BLACK_SEA; } // abbreviated label missing
1302
			else if (uuidArea.equals(ErmsTransformer.uuidBarentszSea)) { return AREA_BARENTSZ_SEA; }
1303
			else if (//(namedArea.getRepresentation(Language.DEFAULT()).getAbbreviatedLabel()).equals("CAS") ||   /carefull: NPE!
1304
					(uuidArea.equals(ErmsTransformer.uuidCaspianSea))) { return AREA_CASPIAN_SEA; } // abbreviated label missing
1305
			else if (uuidArea.equals(ErmsTransformer.uuidPortugueseExclusiveEconomicZone)) { return AREA_PORTUGUESE_EXCLUSIVE_ECONOMIC_ZONE; }
1306
			else if (uuidArea.equals(ErmsTransformer.uuidBelgianExclusiveEconomicZone)) { return AREA_BELGIAN_EXCLUSIVE_ECONOMIC_ZONE; }
1307
			else if (uuidArea.equals(ErmsTransformer.uuidFrenchExclusiveEconomicZone)) { return AREA_FRENCH_EXCLUSIVE_ECONOMIC_ZONE; }
1308
			else if (uuidArea.equals(ErmsTransformer.uuidEnglishChannel)) { return AREA_ENGLISH_CHANNEL; }
1309
			else if (uuidArea.equals(ErmsTransformer.uuidAdriaticSea)) { return AREA_ADRIATIC_SEA; }
1310
			else if (uuidArea.equals(ErmsTransformer.uuidBiscayBay)) { return AREA_BISCAY_BAY; }
1311
			else if (uuidArea.equals(ErmsTransformer.uuidDutchExclusiveEconomicZone)) { return AREA_DUTCH_EXCLUSIVE_ECONOMIC_ZONE; }
1312
			else if (uuidArea.equals(ErmsTransformer.uuidUnitedKingdomExclusiveEconomicZone)) { return AREA_UNITED_KINGDOM_EXCLUSIVE_ECONOMIC_ZONE; }
1313
			else if (uuidArea.equals(ErmsTransformer.uuidSpanishExclusiveEconomicZone)) { return AREA_SPANISH_EXCLUSIVE_ECONOMIC_ZONE; }
1314
			else if (uuidArea.equals(ErmsTransformer.uuidEgyptianExclusiveEconomicZone)) { return AREA_EGYPTIAN_EXCLUSIVE_ECONOMIC_ZONE; }
1315
			else if (uuidArea.equals(ErmsTransformer.uuidTirrenoSea)) { return AREA_TIRRENO_SEA; }
1316
			else if (uuidArea.equals(ErmsTransformer.uuidIcelandicExclusiveEconomicZone)) { return AREA_ICELANDIC_EXCLUSIVE_ECONOMIC_ZONE; }
1317
			else if (uuidArea.equals(ErmsTransformer.uuidIrishExclusiveeconomicZone)) { return AREA_IRISH_EXCLUSIVE_ECONOMIC_ZONE; }
1318
			else if (uuidArea.equals(ErmsTransformer.uuidIrishSea)) { return AREA_IRISH_SEA; }
1319
			else if (uuidArea.equals(ErmsTransformer.uuidIsraeliExclusiveEconomicZone)){ return 218;}
1320
			else if (uuidArea.equals(ErmsTransformer.uuidItalianExclusiveEconomicZone)) { return AREA_ITALIAN_EXCLUSIVE_ECONOMIC_ZONE; }
1321
			else if (uuidArea.equals(ErmsTransformer.uuidNorwegianSea)) { return AREA_NORWEGIAN_SEA; }
1322
			else if (uuidArea.equals(ErmsTransformer.uuidMoroccanExclusiveEconomicZone)) { return AREA_MOROCCAN_EXCLUSIVE_ECONOMIC_ZONE; }
1323
			else if (uuidArea.equals(ErmsTransformer.uuidNorwegianExclusiveEconomicZone)) { return AREA_NORWEGIAN_EXCLUSIVE_ECONOMIC_ZONE; }
1324
			else if (uuidArea.equals(ErmsTransformer.uuidSkagerrak)) { return AREA_SKAGERRAK; }
1325
			else if (uuidArea.equals(ErmsTransformer.uuidTunisianExclusiveEconomicZone)) { return AREA_TUNISIAN_EXCLUSIVE_ECONOMIC_ZONE; }
1326
			else if (uuidArea.equals(ErmsTransformer.uuidWaddenSea)) { return AREA_WADDEN_SEA; }
1327
			else if (uuidArea.equals(ErmsTransformer.uuidBaeltSea)) { return AREA_BELT_SEA; }
1328
			else if (uuidArea.equals(ErmsTransformer.uuidMarmaraSea)) { return AREA_MARMARA_SEA; }
1329
			else if (uuidArea.equals(ErmsTransformer.uuidSeaofAzov)) { return AREA_SEA_OF_AZOV; }
1330
			else if (uuidArea.equals(ErmsTransformer.uuidAegeanSea)) { return AREA_AEGEAN_SEA; }
1331
			else if (uuidArea.equals(ErmsTransformer.uuidBulgarianExclusiveEconomicZone)) { return AREA_BULGARIAN_EXCLUSIVE_ECONOMIC_ZONE; }
1332
			else if (uuidArea.equals(ErmsTransformer.uuidSouthBalticproper)) { return AREA_SOUTH_BALTIC_PROPER; }
1333
			else if (uuidArea.equals(ErmsTransformer.uuidBalticProper)) { return AREA_BALTIC_PROPER; }
1334
			else if (uuidArea.equals(ErmsTransformer.uuidNorthBalticproper)) { return AREA_NORTH_BALTIC_PROPER; }
1335
			else if (uuidArea.equals(ErmsTransformer.uuidArchipelagoSea)) { return AREA_ARCHIPELAGO_SEA; }
1336
			else if (uuidArea.equals(ErmsTransformer.uuidBothnianSea)) { return AREA_BOTHNIAN_SEA; }
1337
			else if (uuidArea.equals(ErmsTransformer.uuidGermanExclusiveEconomicZone)) { return AREA_GERMAN_EXCLUSIVE_ECONOMIC_ZONE; }
1338
			else if (uuidArea.equals(ErmsTransformer.uuidSwedishExclusiveEconomicZone)) { return AREA_SWEDISH_EXCLUSIVE_ECONOMIC_ZONE; }
1339
			else if (uuidArea.equals(ErmsTransformer.uuidUkrainianExclusiveEconomicZone)) { return AREA_UKRAINIAN_EXCLUSIVE_ECONOMIC_ZONE; }
1340
			else if (uuidArea.equals(ErmsTransformer.uuidMadeiranExclusiveEconomicZone)) { return AREA_MADEIRAN_EXCLUSIVE_ECONOMIC_ZONE; }
1341
			else if (uuidArea.equals(ErmsTransformer.uuidLebaneseExclusiveEconomicZone)) { return AREA_LEBANESE_EXCLUSIVE_ECONOMIC_ZONE; }
1342
			else if (uuidArea.equals(ErmsTransformer.uuidSpanishExclusiveEconomicZoneMediterraneanpart)) { return AREA_SPANISH_EXCLUSIVE_ECONOMIC_ZONE_MEDITERRANEAN_PART; }
1343
			else if (uuidArea.equals(ErmsTransformer.uuidEstonianExclusiveEconomicZone)) { return AREA_ESTONIAN_EXCLUSIVE_ECONOMIC_ZONE; }
1344
			else if (uuidArea.equals(ErmsTransformer.uuidCroatianExclusiveEconomicZone)) { return AREA_CROATIAN_EXCLUSIVE_ECONOMIC_ZONE; }
1345
			else if (uuidArea.equals(ErmsTransformer.uuidBalearSea)) { return AREA_BALEAR_SEA; }
1346
			else if (uuidArea.equals(ErmsTransformer.uuidTurkishExclusiveEconomicZone)) { return AREA_TURKISH_EXCLUSIVE_ECONOMIC_ZONE; }
1347
			else if (uuidArea.equals(ErmsTransformer.uuidDanishExclusiveEconomicZone)) { return AREA_DANISH_EXCLUSIVE_ECONOMIC_ZONE; }
1348

    
1349
			else if (uuidArea.equals(ErmsTransformer.uuidAfghanistan)) { return 297; }
1350
            else if (uuidArea.equals(ErmsTransformer.uuidAlboranSea)) { return 219; }
1351
			else if (uuidArea.equals(ErmsTransformer.uuidAlgeria)) { return 220; }
1352
			else if (uuidArea.equals(ErmsTransformer.uuidAngola)) { return 221; }
1353
			else if (uuidArea.equals(ErmsTransformer.uuidArcticOcean)) { return 296; }
1354
            else if (uuidArea.equals(ErmsTransformer.uuidAustralianExclusiveEconomicZone)) { return 222; }
1355
			else if (uuidArea.equals(ErmsTransformer.uuidBahamas)) { return 223; }
1356
			else if (uuidArea.equals(ErmsTransformer.uuidBalearicSea)) { return 224; }
1357
			else if (uuidArea.equals(ErmsTransformer.uuidBelgium)) { return 225; }
1358
			else if (uuidArea.equals(ErmsTransformer.uuidBelize)) { return 226; }
1359
			else if (uuidArea.equals(ErmsTransformer.uuidBrazil)) { return 227; }
1360
			else if (uuidArea.equals(ErmsTransformer.uuidBulgaria)) { return 228; }
1361
			else if (uuidArea.equals(ErmsTransformer.uuidCanada)) { return 229; }
1362
			else if (uuidArea.equals(ErmsTransformer.uuidCapeVerde)) { return 230; }
1363
			else if (uuidArea.equals(ErmsTransformer.uuidCapeVerdeanExclusiveEconomicZone)) { return 231; }
1364
			else if (uuidArea.equals(ErmsTransformer.uuidCaribbeanSea)) { return 210; }
1365
            else if (uuidArea.equals(ErmsTransformer.uuidChile)) { return 232; }
1366
			else if (uuidArea.equals(ErmsTransformer.uuidColombia)) { return 233; }
1367
			else if (uuidArea.equals(ErmsTransformer.uuidCostaRica)) { return 234; }
1368
			else if (uuidArea.equals(ErmsTransformer.uuidCroatia)) { return 235; }
1369
			else if (uuidArea.equals(ErmsTransformer.uuidCuba)) { return 236; }
1370
			else if (uuidArea.equals(ErmsTransformer.uuidDenmark)) { return 292; }
1371
            else if (uuidArea.equals(ErmsTransformer.uuidEgypt)) { return 237; }
1372
			else if (uuidArea.equals(ErmsTransformer.uuidEstonia)) { return 238; }
1373
			else if (uuidArea.equals(ErmsTransformer.uuidFaeroeExclusiveEconomicZone)) { return 239; }
1374
			else if (uuidArea.equals(ErmsTransformer.uuidFrance)) { return 240; }
1375
			else if (uuidArea.equals(ErmsTransformer.uuidGhana)) { return 241; }
1376
			else if (uuidArea.equals(ErmsTransformer.uuidGreece)) { return 242; }
1377
			else if (uuidArea.equals(ErmsTransformer.uuidGermany)) { return 298; }
1378
            else if (uuidArea.equals(ErmsTransformer.uuidGreekExclusiveEconomicZone)) { return AREA_GREEK_EXCLUSIVE_ECONOMIC_ZONE; }
1379
            else if (uuidArea.equals(ErmsTransformer.uuidGulfOfBothnia)) { return 243; }
1380
			else if (uuidArea.equals(ErmsTransformer.uuidGulfOfFinland)) { return 244; }
1381
			else if (uuidArea.equals(ErmsTransformer.uuidGulfOfGuinea)) { return 245; }
1382
			else if (uuidArea.equals(ErmsTransformer.uuidGulfOfMexico)) { return 246; }
1383
			else if (uuidArea.equals(ErmsTransformer.uuidGulfOfRiga)) { return 247; }
1384
			else if (uuidArea.equals(ErmsTransformer.uuidIceland)) { return 248; }
1385
			else if (uuidArea.equals(ErmsTransformer.uuidIonianSea)) { return 249; }
1386
			else if (uuidArea.equals(ErmsTransformer.uuidIreland)) { return 250; }
1387
            else if (uuidArea.equals(ErmsTransformer.uuidItaly)) { return 251; }
1388
			else if (uuidArea.equals(ErmsTransformer.uuidJamaica)) { return 252; }
1389
			else if (uuidArea.equals(ErmsTransformer.uuidKattegat)) { return 253; }
1390
			else if (uuidArea.equals(ErmsTransformer.uuidLevantineSea)) { return 254; }
1391
			else if (uuidArea.equals(ErmsTransformer.uuidLigurianSea)) { return 255; }
1392
			else if (uuidArea.equals(ErmsTransformer.uuidMalteseExclusiveEconomicZone)) { return 256; }
1393
			else if (uuidArea.equals(ErmsTransformer.uuidMauritanianExclusiveEconomicZone)) { return 257; }
1394
			else if (uuidArea.equals(ErmsTransformer.uuidMediterraneanSea_EasternBasin)) { return 258; }
1395
			else if (uuidArea.equals(ErmsTransformer.uuidMediterraneanSea_WesternBasin)) { return 259; }
1396
			else if (uuidArea.equals(ErmsTransformer.uuidMexico)) { return 260; }
1397
			else if (uuidArea.equals(ErmsTransformer.uuidMongolia)) { return 299; }
1398
            else if (uuidArea.equals(ErmsTransformer.uuidMorocco)) { return 261; }
1399
			else if (uuidArea.equals(ErmsTransformer.uuidNetherlands)) { return 262; }
1400
			else if (uuidArea.equals(ErmsTransformer.uuidNewZealand)) { return 263; }
1401
			else if (uuidArea.equals(ErmsTransformer.uuidNewZealandExclusiveEconomicZone)) { return 264; }
1402
			else if (uuidArea.equals(ErmsTransformer.uuidNorthAtlanticOcean)) { return 265; }
1403
			else if (uuidArea.equals(ErmsTransformer.uuidNorway)) { return 266; }
1404
			else if (uuidArea.equals(ErmsTransformer.uuidPanama)) { return 267; }
1405
			else if (uuidArea.equals(ErmsTransformer.uuidPanamanianExclusiveEconomicZone)) { return 268; }
1406
			else if (uuidArea.equals(ErmsTransformer.uuidPolishExclusiveEconomicZone)) { return 216; }
1407
            else if (uuidArea.equals(ErmsTransformer.uuidPortugal)) { return 269; }
1408
			else if (uuidArea.equals(ErmsTransformer.uuidPortugueseExclusiveEconomicZone_Azores)) { return 270; }
1409
			else if (uuidArea.equals(ErmsTransformer.uuidPortugueseExclusiveEconomicZone_Madeira)) { return 271; }
1410
			else if (uuidArea.equals(ErmsTransformer.uuidRedSea)) { return 272; }
1411
			else if (uuidArea.equals(ErmsTransformer.uuidRussianExclusiveEconomicZone)) { return 217; }
1412
			else if (uuidArea.equals(ErmsTransformer.uuidSeaOfMarmara)) { return 273; }
1413
			else if (uuidArea.equals(ErmsTransformer.uuidSenegaleseExclusiveEconomicZone)) { return 274; }
1414
			else if (uuidArea.equals(ErmsTransformer.uuidSingapore)) { return 275; }
1415
			else if (uuidArea.equals(ErmsTransformer.uuidSlovenianExclusiveEconomicZone)) { return 276; }
1416
			else if (uuidArea.equals(ErmsTransformer.uuidSouthAfrica)) { return 277; }
1417
			else if (uuidArea.equals(ErmsTransformer.uuidSouthAfricanExclusiveEconomicZone)) { return 278; }
1418
			else if (uuidArea.equals(ErmsTransformer.uuidSouthChinaSea)) { return 279; }
1419
			else if (uuidArea.equals(ErmsTransformer.uuidSpain)) { return 280; }
1420
			else if (uuidArea.equals(ErmsTransformer.uuidSpanishExclusiveEconomicZone_CanaryIslands)) { return 281; }
1421
			else if (uuidArea.equals(ErmsTransformer.uuidSriLankanExclusiveEconomicZone)) { return 282; }
1422
			else if (uuidArea.equals(ErmsTransformer.uuidStraitOfGibraltar)) { return 283; }
1423
			else if (uuidArea.equals(ErmsTransformer.uuidSweden)) { return 284; }
1424
			else if (uuidArea.equals(ErmsTransformer.uuidTunisia)) { return 285; }
1425
			else if (uuidArea.equals(ErmsTransformer.uuidTurkey)) { return 286; }
1426
			else if (uuidArea.equals(ErmsTransformer.uuidTyrrhenianSea)) { return 287; }
1427
			else if (uuidArea.equals(ErmsTransformer.uuidUnitedKingdom)) { return 288; }
1428
	        else if (uuidArea.equals(ErmsTransformer.uuidUnitedStates)) { return 291; }
1429
			else if (uuidArea.equals(ErmsTransformer.uuidUnitedStatesExclusiveEconomicZone_Alaska)) { return 289; }
1430
			else if (uuidArea.equals(ErmsTransformer.uuidVenezuela)) { return 290; }
1431

    
1432
			else {
1433
				logger.warn("Unknown ERMS Area: " + area.getTitleCache());
1434
			}
1435

    
1436
		} else {
1437
            logger.warn("Unknown NamedArea Area not in a known vocabulary: " + area.getTitleCache());
1438
        }
1439
		return null;
1440
	}
1441

    
1442

    
1443
	/**
1444
	 * Returns the PESI SourceUseId for a given CDM sourceUseId.
1445
	 * @param sourceUseId
1446
	 * @return
1447
	 */
1448
	public static Integer sourceUseIdSourceUseId(Integer sourceUseId) {
1449
		// TODO: CDM sourceUseId and PESI sourceUseId are equal for now.
1450
		Integer result = null;
1451
		switch (sourceUseId) {
1452
			case 3: return ADDITIONAL_SOURCE;
1453
			case 4: return SOURCE_OF_SYNONYMY;
1454
			case 8: return NOMENCLATURAL_REFERENCE;
1455
		}
1456
		return result;
1457
	}
1458

    
1459
	@Override
1460
	public Object getKeyByLanguage(Language language) throws UndefinedTransformerMethodException {
1461
		return language2LanguageId(language);
1462
	}
1463

    
1464
	@Override
1465
	public String getCacheByLanguage(Language language) throws UndefinedTransformerMethodException {
1466
		if (language == null){
1467
			return null;
1468
		}else{
1469
			return this.languageCacheMap.get(getKeyByLanguage(language));
1470
		}
1471
	}
1472

    
1473
	/**
1474
	 * Returns the identifier of the given Language.
1475
	 */
1476
	public static Integer language2LanguageId(Language language) {
1477
		if (language == null ) {
1478
			return null;
1479
		}
1480
		Integer result;
1481
		if ((result = languageCodeToKeyMap.get(language.getIso639_1())) != null){
1482
		    return result;
1483
		}else if ((result = languageCodeToKeyMap.get(language.getIdInVocabulary())) != null){
1484
            return result;
1485
        //Languages without ISO identifier
1486
		}else if (language.getUuid().equals(BerlinModelTransformer.uuidLangValencian)){return LANG_VALENCIAN;
1487
        }else if (language.getUuid().equals(BerlinModelTransformer.uuidLangHighAragonese)){return LANG_HIGH_ARAGONES;
1488
        }else if (language.getUuid().equals(BerlinModelTransformer.uuidLangMajorcan)){return LANG_MAJORCAN;
1489
        //FE wrong mapping in FE, Dutch_Middle should probably be Dutch
1490
        }else if (language.equals(Language.DUTCH_MIDDLE())){return LANG_DUTCH;
1491
        //some common names from ILDIS have no defined language
1492
        }else if (language.equals(Language.UNKNOWN_LANGUAGE())){return LANG_UNKNOWN;
1493
        } else {
1494
			logger.warn("Unknown Language: " + language.getTitleCache());
1495
			return null;
1496
		}
1497
	}
1498

    
1499
	/**
1500
	 * Returns the NodeCategoryCache for a given TextData.
1501
	 */
1502
	@Override
1503
    public String getCacheByFeature(Feature feature) {
1504
		if (feature == null){
1505
			return null;
1506
		}else{
1507
			return this.featureCacheMap.get(feature2NoteCategoryFk(feature));
1508
		}
1509
	}
1510

    
1511
	/**
1512
	 * Returns the NodeCategoryFk for a given TextData.
1513
	 */
1514
	public static Integer feature2NoteCategoryFk(Feature feature) {
1515
		if (feature == null) {
1516
			return null;
1517
		}
1518

    
1519
		if (feature.equals(Feature.DESCRIPTION())) {
1520
			return NoteCategory_description;
1521
		} else if (feature.equals(Feature.ECOLOGY())) {
1522
			return NoteCategory_ecology;
1523
		} else if (feature.equals(Feature.PHENOLOGY())) {
1524
			return NoteCategory_phenology;
1525
		} else if (feature.equals(Feature.DIAGNOSIS())) {
1526
            return NoteCategory_Diagnosis;
1527
        } else if (feature.equals(Feature.COMMON_NAME())) {
1528
			return NoteCategory_Common_names;
1529
		} else if (feature.equals(Feature.OCCURRENCE())) {
1530
			return NoteCategory_Occurrence;
1531
		} else if (feature.equals(Feature.DISTRIBUTION())) {
1532
			return NoteCategory_Distribution;
1533
		} else if (feature.equals(Feature.ETYMOLOGY())) {
1534
            return NoteCategory_Etymology;
1535
        } else if (feature.getUuid().equals(ErmsTransformer.uuidAcknowledgments)){
1536
		    return NoteCategory_Acknowledgments;
1537
		} else if (feature.getUuid().equals(ErmsTransformer.uuidAdditionalinformation)) {
1538
		    return NoteCategory_Additional_information;
1539
		} else if (feature.getUuid().equals(ErmsTransformer.uuidAlienSpecies)) {
1540
		    return NoteCategory_Alien_Species;
1541
		} else if (feature.getUuid().equals(ErmsTransformer.uuidAuthority)) {
1542
		    return NoteCategory_Authority;
1543
		} else if (feature.getUuid().equals(ErmsTransformer.uuidDepthRange)) {
1544
		    return NoteCategory_Depth_Range;
1545
		} else if (feature.getUuid().equals(ErmsTransformer.uuidBiology)) {
1546
		    return NoteCategory_Biology;
1547
		} else if (feature.getUuid().equals(ErmsTransformer.uuidClassification)) {
1548
		    return NoteCategory_Classification;
1549
		} else if (feature.getUuid().equals(ErmsTransformer.uuidDiet)) {
1550
		    return NoteCategory_Diet;
1551
		} else if (feature.getUuid().equals(ErmsTransformer.uuidDimensions)) {
1552
		    return NoteCategory_Dimensions;
1553
		} else if (feature.getUuid().equals(ErmsTransformer.uuidEditorsComment)) {
1554
		    return NoteCategory_Editors_Comment;
1555
		} else if (feature.getUuid().equals(ErmsTransformer.uuidEnvironment)) {
1556
		    return NoteCategory_Environment;
1557
		} else if (feature.getUuid().equals(ErmsTransformer.uuidFossilRange)) {
1558
		    return NoteCategory_Fossil_Range;
1559
		} else if (feature.getUuid().equals(ErmsTransformer.uuidGrammaticalGender)) {
1560
		    return NoteCategory_Grammatical_Gender;
1561
		} else if (feature.getUuid().equals(ErmsTransformer.uuidHabitat)) {
1562
		    return NoteCategory_Habitat;
1563
		} else if (feature.getUuid().equals(ErmsTransformer.uuidHomonymy)) {
1564
		    return NoteCategory_Homonymy;
1565
		} else if (feature.getUuid().equals(ErmsTransformer.uuidIdentification)) {
1566
		    return NoteCategory_Identification;
1567
		} else if (feature.getUuid().equals(ErmsTransformer.uuidIntroducedSpeciesRemark)) {
1568
		    return NoteCategory_Introduced_Species_Remark;
1569
		} else if (feature.getUuid().equals(ErmsTransformer.uuidMorphology)) {
1570
		    return NoteCategory_Morphology;
1571
		} else if (feature.getUuid().equals(ErmsTransformer.uuidNewCombination)) {
1572
		    return NoteCategory_New_Combination;
1573
		} else if (feature.getUuid().equals(ErmsTransformer.uuidNomenclature)) {
1574
		    return NoteCategory_Nomenclature;
1575
		} else if (feature.getUuid().equals(ErmsTransformer.uuidNote)){
1576
		    return NoteCategory_Note;
1577
		} else if (feature.getUuid().equals(ErmsTransformer.uuidOriginalCombination)) {
1578
		    return NoteCategory_Original_Combination;
1579
		} else if (feature.getUuid().equals(ErmsTransformer.uuidOriginalDescription)) {
1580
		    return NoteCategory_Original_Description;
1581
		} else if (feature.getUuid().equals(ErmsTransformer.uuidOriginalpublication)) {
1582
		    return NoteCategory_Original_publication;
1583
		} else if (feature.getUuid().equals(ErmsTransformer.uuidPublicationdate)) {
1584
            return NoteCategory_Publication_date;
1585
        } else if (feature.getUuid().equals(ErmsTransformer.uuidRank)) {
1586
		    return NoteCategory_Rank;
1587
		} else if (feature.getUuid().equals(ErmsTransformer.uuidRemark)) {
1588
		    return NoteCategory_Remark;
1589
		} else if (feature.getUuid().equals(ErmsTransformer.uuidReproduction)) {
1590
		    return NoteCategory_Reproduction;
1591
		} else if (feature.getUuid().equals(ErmsTransformer.uuidSpelling)) {
1592
		    return NoteCategory_Spelling;
1593
		} else if (feature.getUuid().equals(ErmsTransformer.uuidSpecimen)) {
1594
            return NoteCategory_Specimen;
1595
        } else if (feature.getUuid().equals(ErmsTransformer.uuidStatus)){
1596
		    return NoteCategory_Status;
1597
		} else if (feature.getUuid().equals(ErmsTransformer.uuidSynonymy)) {
1598
		    return NoteCategory_Synonymy;
1599
		} else if (feature.getUuid().equals(ErmsTransformer.uuidSyntype)) {
1600
		    return NoteCategory_Syntype;
1601
		} else if (feature.getUuid().equals(ErmsTransformer.uuidSystematics)) {
1602
		    return NoteCategory_Systematics;
1603
		} else if (feature.getUuid().equals(ErmsTransformer.uuidTaxonomicRemarks)) {
1604
			return NoteCategory_Taxonomic_Remarks;
1605
		} else if (feature.getUuid().equals(ErmsTransformer.uuidTaxonomy)) {
1606
			return NoteCategory_Taxonomy;
1607
		} else if (feature.getUuid().equals(ErmsTransformer.uuidTaxonomicstatus)) {
1608
			return NoteCategory_Taxonomic_status;
1609
		} else if (feature.getUuid().equals(ErmsTransformer.uuidTypelocality)) {
1610
		    return NoteCategory_Type_locality;
1611
		} else if (feature.getUuid().equals(ErmsTransformer.uuidTypeMaterial)) {
1612
		    return NoteCategory_Type_Material;
1613
		} else if (feature.getUuid().equals(ErmsTransformer.uuidTypeSpecimen)) {
1614
		    return NoteCategory_Type_Specimen;
1615
        } else if (feature.getUuid().equals(ErmsTransformer.uuidTypespecies)) {
1616
            return NoteCategory_Type_species;
1617
		} else if (feature.getUuid().equals(ErmsTransformer.uuidTaxonomicRemark)) {
1618
			return NoteCategory_Taxonomic_Remark;
1619
		} else if (feature.getUuid().equals(ErmsTransformer.uuidValidity)) {
1620
			return NoteCategory_Validity;
1621

    
1622
//        } else if (feature.getUuid().equals(ErmsTransformer.uuidSourceOfSynonymy)) {
1623
//		    logger.debug("Source of synonymy not yet handled");
1624
//		    return null;
1625
		} else if (feature.equals(Feature.CITATION())) {
1626
			return null;  //citations are handled differently
1627
		} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureMaps)){
1628
			return NoteCategory_Link_to_maps;
1629
		} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureUse)){
1630
			return NoteCategory_Use;
1631
		} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureComments)){
1632
			return NoteCategory_Comments;
1633
		} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureConservationStatus)){
1634
			return NoteCategory_Conservation_Status;
1635

    
1636
		//E+M
1637
		} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureDistrEM)){
1638
			return NoteCategory_general_distribution_euromed;
1639
		} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureDistrWorld)){
1640
			return NoteCategory_general_distribution_world;
1641
		} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureEditorBrackets)){
1642
			return NoteCategory_Editor_Brackets;
1643
		} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureEditorParenthesis)){
1644
			return NoteCategory_Editor_Parenthesis;
1645
		} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureInedited)){
1646
			return NoteCategory_Inedited;
1647
		} else if (feature.getUuid().equals(BerlinModelTransformer.uuidFeatureCommentsEditing)){
1648
			return NoteCategory_Comments_on_editing_process;
1649

    
1650
		}else{
1651
			logger.warn("Unhandled Feature: " + feature.getTitleCache());
1652
			return null;
1653
		}
1654
	}
1655

    
1656
	/**
1657
	 * Returns the string representation for a given rank.
1658
	 */
1659
	public String getCacheByRankAndKingdom(Rank rank, Integer pesiKingdomId) {
1660
		if (rank == null){
1661
			return null;
1662
		}else if (pesiKingdomId == null && rank.equals(Rank.DOMAIN())){  //might be Superdomain in future
1663
		    return this.rankCacheMap.get(0).get(0);
1664
		}else{
1665
		    Map<Integer, String> rankMap = this.rankCacheMap.get(pesiKingdomId);
1666
		    if (rankMap != null){
1667
		        return rankMap.get(rank2RankId(rank, pesiKingdomId));
1668
		    }else{
1669
		        logger.warn("RankCacheMap is null for " + pesiKingdomId);
1670
		        return null;
1671
		    }
1672
		}
1673
	}
1674

    
1675
	/**
1676
	 * Returns the identifier of a PESI specific kingdom for a given CDM nomenclatural code.
1677
	 * @param nomenclaturalCode
1678
	 * @return KINGDOM_ANIMALIA for NomenclaturalCode.ICZN, KINGDOM_PLANTAE for NomenclaturalCode.ICNAFP
1679
	 */
1680
	public static Integer nomenclaturalCode2Kingdom(NomenclaturalCode nomenclaturalCode) {
1681
		Integer result = null;
1682
		// TODO: This needs to be refined. For now we differentiate between animalia, plantae and bacteria only.
1683
		if (nomenclaturalCode.equals(NomenclaturalCode.ICZN)) {
1684
			result = KINGDOM_ANIMALIA;
1685
		} else if (nomenclaturalCode.equals(NomenclaturalCode.ICNAFP)) {
1686
			result = KINGDOM_PLANTAE;
1687
		} else if (nomenclaturalCode.equals(NomenclaturalCode.ICNB)) {
1688
			result = KINGDOM_BACTERIA;
1689
//		} else if (nomenclaturalCode.equals(NomenclaturalCode.)) { // Biota
1690
//			result =
1691
		} else {
1692
 			logger.error("NomenclaturalCode not yet considered: " + nomenclaturalCode.getUuid() + " (" +  nomenclaturalCode.getTitleCache() + ")");
1693
		}
1694
		return result;
1695
	}
1696

    
1697
	/**
1698
	 * Returns the RankId for a Rank.
1699
	 * @param rank
1700
	 * @return
1701
	 */
1702
	public static Integer rank2RankId (Rank rank, Integer pesiKingdomId) {
1703
		Integer result = null;
1704
		if (rank == null) {
1705
			return null;
1706
		}else if (rank.equals(Rank.DOMAIN())){
1707
		    return KINGDOM_NULL;
1708
		}else if (rank.equals(Rank.KINGDOM())) {
1709
            result = Kingdom;
1710
        }else if (rank.equals(Rank.SUBKINGDOM())) {
1711
            result = Subkingdom;
1712
        } else if (rank.equals(Rank.PHYLUM())) {
1713
            result = Phylum;
1714
        }else if (rank.equals(Rank.DIVISION())) {  //same as Phylum
1715
            result = Division;
1716
        }else if (rank.equals(Rank.SUBPHYLUM())) {
1717
            result = Subphylum;
1718
        }else if (rank.equals(Rank.SUBDIVISION())) { //same as Subphylum
1719
            result = Subdivision;
1720
        }else if (rank.equals(Rank.CLASS())) {
1721
            result = Class;
1722
        } else if (rank.equals(Rank.SUBCLASS())) {
1723
            result = Subclass;
1724
        } else if (rank.equals(Rank.ORDER())) {
1725
            result = Order;
1726
        } else if (rank.equals(Rank.SUBORDER())) {
1727
            result = Suborder;
1728
        } else if (rank.equals(Rank.FAMILY())) {
1729
            result = Family;
1730
        } else if (rank.equals(Rank.SUBFAMILY())) {
1731
            result = Subfamily;
1732
        } else if (rank.equals(Rank.TRIBE())) {
1733
            result = Tribe;
1734
        } else if (rank.equals(Rank.SUBTRIBE())) {
1735
            result = Subtribe;
1736
        } else if (rank.equals(Rank.GENUS())) {
1737
            result = Genus;
1738
        } else if (rank.equals(Rank.SUBGENUS())) {
1739
            result = Subgenus;
1740
        } else if (rank.equals(Rank.SPECIES())) {
1741
            result = Species;
1742
        } else if (rank.equals(Rank.SUBSPECIES())) {
1743
            result = Subspecies;
1744
        } else if (rank.equals(Rank.VARIETY())) {
1745
            result = Variety;
1746
        } else if (rank.equals(Rank.FORM())) {
1747
            result = Forma;
1748
        } else
1749

    
1750
		// We differentiate between Animalia and Plantae only for now.
1751
		if (pesiKingdomId != null && pesiKingdomId.intValue() == KINGDOM_ANIMALIA) {
1752
			if (rank.equals(Rank.INFRAKINGDOM())) {result = Infrakingdom;
1753
            } else if (rank.equals(Rank.SUPERPHYLUM())) {result = Superphylum;
1754
			} else if (rank.equals(Rank.INFRAPHYLUM())) {result = Infraphylum;
1755
			} else if (rank.equals(Rank.SUPERCLASS())) {result = Superclass;
1756
			} else if (rank.equals(Rank.INFRACLASS())) {result = Infraclass;
1757
            } else if (rank.getUuid().equals(ErmsTransformer.uuidRankSubterclass)) {result = Subterclass;
1758
			} else if (rank.equals(Rank.SUPERORDER())) {result = Superorder;
1759
			} else if (rank.equals(Rank.INFRAORDER())) {result = Infraorder;
1760
			} else if (rank.getUuid().equals(ErmsTransformer.uuidRankParvorder)) {result = Parvorder;
1761
            } else if (rank.equals(Rank.SECTION_ZOOLOGY())) {result = Animalia_Section;
1762
			} else if (rank.equals(Rank.SUBSECTION_ZOOLOGY())) {result = Animalia_Subsection;
1763
			} else if (rank.equals(Rank.SUPERFAMILY())) {result = Superfamily;
1764
			} else if (rank.equals(Rank.NATIO())) {result = Natio;
1765
			} else if (rank.equals(Rank.SUBVARIETY())) {result = Subvariety;
1766
			} else if (rank.equals(Rank.SUBFORM())) {result = Subform;
1767
            } else {
1768
				//TODO Exception
1769
				logger.warn("Rank for Kingdom Animalia not yet supported in CDM: "+ rank.getLabel());
1770
				return null;
1771
			}
1772
		} else if (pesiKingdomId != null && pesiKingdomId.intValue() == KINGDOM_PLANTAE) {
1773
			if (rank.equals(Rank.INFRAKINGDOM())) {result = Infrakingdom;
1774
            } else if (rank.equals(Rank.SUPERORDER())) {result = Superorder;
1775
			} else if (rank.equals(Rank.SECTION_BOTANY())) {result = Bot_Section;
1776
			} else if (rank.equals(Rank.SUBSECTION_BOTANY())) {result = Bot_Subsection;
1777
			} else if (rank.equals(Rank.SERIES())) {result = Series;
1778
			} else if (rank.equals(Rank.SUBSERIES())) {result = Subseries;
1779
			} else if (rank.equals(Rank.SPECIESAGGREGATE() )) {result = Aggregate;
1780
			} else if (rank.equals(Rank.SPECIESGROUP())) {
1781
				logger.warn("Rank Species Group not yet implemented");
1782
				result = null;
1783
			} else if (rank.getUuid().equals(Rank.uuidCollSpecies)) {result = Coll_Species;
1784
			} else if (rank.equals(Rank.GREX())) {result = Grex;
1785
			} else if (rank.getUuid().equals(Rank.uuidProles) ) {result = Proles;
1786
			} else if (rank.getUuid().equals(Rank.uuidRace)) {result = Race;
1787
			} else if (rank.equals(Rank.CONVAR())) {result = Convarietas;
1788
			} else if (rank.equals(Rank.SUBVARIETY())) {result = Subvariety;
1789
			} else if (rank.equals(Rank.SUBFORM())) {result = Subform;
1790
			} else if (rank.equals(Rank.SPECIALFORM())) {result = Forma_spec;
1791
			} else if (rank.equals(Rank.INFRAGENERICTAXON())) {result = Taxa_infragen;
1792
			} else if (rank.equals(Rank.INFRASPECIFICTAXON())) {result = Taxa_infraspec;
1793
			} else {
1794
				//TODO Exception
1795
				logger.warn("Rank for Kingdom Plantae not yet supported in CDM: "+ rank.getLabel());
1796
				return null;
1797
			}
1798
		} else if (pesiKingdomId != null && pesiKingdomId.intValue() == KINGDOM_FUNGI) {
1799
		    if (rank.equals(Rank.SECTION_BOTANY())) { result = Bot_Section;
1800
		    } else if (rank.equals(Rank.SUBSECTION_BOTANY())) { result = Bot_Subsection;
1801
		    } else if (rank.equals(Rank.SUBVARIETY())) { result = Subvariety;
1802
		    } else if (rank.equals(Rank.SUBFORM())) { result = Subform;
1803
		    } else if (rank.equals(Rank.SPECIALFORM())) {result = Forma_spec;
1804
		    } else {
1805
		        //TODO Exception
1806
		        logger.warn("Rank for Kingdom Fungi not yet supported in CDM: "+ rank.getLabel());
1807
		        return null;
1808
		    }
1809
        }else if (pesiKingdomId != null && pesiKingdomId.intValue() == KINGDOM_PROTOZOA) {
1810
            if (rank.equals(Rank.INFRAKINGDOM())) { result = Infrakingdom;
1811
            } else if (rank.equals(Rank.SUPERCLASS())) { result = Superclass;
1812
            } else if (rank.equals(Rank.INFRACLASS())) { result = Infraclass;
1813
            } else if (rank.equals(Rank.SUPERORDER())) { result = Superorder;
1814
            } else if (rank.equals(Rank.INFRAORDER())) { result = Infraorder;
1815
            } else if (rank.equals(Rank.SUPERFAMILY())) { result = Superfamily;
1816
            } else if (rank.equals(Rank.SPECIALFORM())) {result = Forma_spec;
1817
            } else {
1818
                //TODO Exception
1819
                logger.warn("Rank for Kingdom Protozoa not yet supported in CDM: "+ rank.getLabel());
1820
                return null;
1821
            }
1822
        } else if (pesiKingdomId != null && pesiKingdomId.intValue() == KINGDOM_BACTERIA) {
1823
            if (rank.equals(Rank.SUPERCLASS())) { result = Superclass;
1824
            } else if (rank.equals(Rank.INFRACLASS())) { result = Infraclass;
1825
            } else if (rank.equals(Rank.SUPERORDER())) { result = Superorder;
1826
            } else if (rank.equals(Rank.INFRAORDER())) { result = Infraorder;
1827
            } else if (rank.equals(Rank.SUPERFAMILY())) { result = Superfamily;
1828
            } else {
1829
                //TODO Exception
1830
                logger.warn("Rank for Kingdom Bacteria not yet supported in CDM: "+ rank.getLabel());
1831
                return null;
1832
            }
1833
        }else if (pesiKingdomId != null && pesiKingdomId.intValue() == KINGDOM_CHROMISTA) {
1834
            if (rank.equals(Rank.INFRAKINGDOM())) { result = Infrakingdom;
1835
            } else if (rank.equals(Rank.INFRAPHYLUM())) { result = Infraphylum;
1836
            } else if (rank.equals(Rank.SUPERCLASS())) { result = Superclass;
1837
            } else if (rank.equals(Rank.INFRACLASS())) { result = Infraclass;
1838
            } else if (rank.equals(Rank.SUPERORDER())) { result = Superorder;
1839
            } else if (rank.equals(Rank.INFRAORDER())) { result = Infraorder;
1840
            } else if (rank.equals(Rank.SUPERFAMILY())) { result = Superfamily;
1841
            } else if (rank.equals(Rank.SECTION_BOTANY())) { result = Bot_Section;
1842
            } else if (rank.equals(Rank.SUBSECTION_BOTANY())) { result = Bot_Subsection;
1843
            } else if (rank.equals(Rank.SUBVARIETY())) { result = Subvariety;
1844
            } else if (rank.equals(Rank.SPECIALFORM())) {result = Forma_spec;
1845
            } else {
1846
                //TODO Exception
1847
                logger.warn("Rank for Kingdom Chromista not yet supported in CDM: "+ rank.getLabel());
1848
                return null;
1849
            }
1850
        }else{
1851
			//TODO Exception
1852
			logger.warn("Kingdom not yet supported in CDM: "+ pesiKingdomId);
1853
			return null;
1854
		}
1855
		return result;
1856
	}
1857

    
1858
	public static Integer nameTypeDesignationStatus2TypeDesignationStatusId(NameTypeDesignationStatus nameTypeDesignationStatus) {
1859
		if (nameTypeDesignationStatus == null) {
1860
			return null;
1861
		}
1862
		if (nameTypeDesignationStatus.equals(NameTypeDesignationStatus.ORIGINAL_DESIGNATION())) {
1863
			return TYPE_BY_ORIGINAL_DESIGNATION;
1864
		} else if (nameTypeDesignationStatus.equals(NameTypeDesignationStatus.SUBSEQUENT_DESIGNATION())) {
1865
			return TYPE_BY_SUBSEQUENT_DESIGNATION;
1866
		} else if (nameTypeDesignationStatus.equals(NameTypeDesignationStatus.MONOTYPY())) {
1867
			return TYPE_BY_MONOTYPY;
1868
		} else {
1869
			//TODO Figure out a way to handle this gracefully.
1870
			logger.warn("Name Type Designation Status not yet supported in PESI: "+ nameTypeDesignationStatus.getLabel());
1871
			return null;
1872
		}
1873

    
1874
	}
1875

    
1876
	public static String nameTypeDesignationStatus2TypeDesignationStatusCache(NameTypeDesignationStatus nameTypeDesignationStatus) {
1877
		if (nameTypeDesignationStatus == null) {
1878
			return null;
1879
		}
1880
		if (nameTypeDesignationStatus.equals(NameTypeDesignationStatus.ORIGINAL_DESIGNATION())) {
1881
			return TYPE_STR_BY_ORIGINAL_DESIGNATION;
1882
		} else if (nameTypeDesignationStatus.equals(NameTypeDesignationStatus.SUBSEQUENT_DESIGNATION())) {
1883
			return TYPE_STR_BY_SUBSEQUENT_DESIGNATION;
1884
		} else if (nameTypeDesignationStatus.equals(NameTypeDesignationStatus.MONOTYPY())) {
1885
			return TYPE_STR_BY_MONOTYPY;
1886
		} else {
1887
			//TODO Figure out a way to handle this gracefully.
1888
			logger.warn("Name Type Designation Status not yet supported in PESI: "+ nameTypeDesignationStatus.getLabel());
1889
			return null;
1890
		}
1891
	}
1892

    
1893
	/**
1894
	 * @see PesiTaxonExport#doPhaseUpdates(PesiExportState) for further transformation
1895
	 * @param taxonBase
1896
	 * @return
1897
	 */
1898
	public static Integer taxonBase2statusFk (TaxonBase<?> taxonBase){
1899
		if (taxonBase == null){
1900
			return null;
1901
		}
1902
		if (taxonBase.isInstanceOf(Taxon.class)){
1903
			Taxon taxon = CdmBase.deproxy(taxonBase, Taxon.class);
1904
			Set<TaxonRelationship> rels = taxon.getRelationsFromThisTaxon();
1905
			Set<TaxonNode> nodes = taxon.getTaxonNodes();
1906
			if (!rels.isEmpty() && !nodes.isEmpty()){
1907
			    logger.warn("Taxon has relations and parent. This is not expected in E+M, but maybe possible in ERMS. Check if taxon status is correct.");
1908
			}else if (rels.isEmpty() && nodes.isEmpty()){
1909
                logger.warn("Taxon has neither relations nor parent. This is not expected. Check if taxon status is correct.");
1910
            }
1911
			if (!rels.isEmpty()){
1912
			    //we expect all rels to have same type, maybe not true
1913
			    UUID relTypeUuid = rels.iterator().next().getType().getUuid();
1914
			    //E+M
1915
			    if (TaxonRelationshipType.proParteUuids().contains(relTypeUuid)){
1916
	                return T_STATUS_PRO_PARTE_SYN;
1917
	            }else if (TaxonRelationshipType.partialUuids().contains(relTypeUuid)){
1918
	                return T_STATUS_PARTIAL_SYN;
1919
	            }else if (TaxonRelationshipType.misappliedNameUuids().contains(relTypeUuid)){
1920
	                return T_STATUS_SYNONYM;  //no explicit MAN status exists in PESI
1921
	            }
1922
			    //ERMS
1923
	            else if (TaxonRelationshipType.pseudoTaxonUuids().contains(relTypeUuid)){
1924
	                return T_STATUS_SYNONYM;
1925
	            }
1926
			}
1927
			if (!nodes.isEmpty()){
1928
			    TaxonNode parentNode = nodes.iterator().next().getParent();
1929
			    if (parentNode.getTaxon() != null && !parentNode.getTaxon().isPublish()){
1930
			        if (parentNode.getTaxon().getUuid().equals(uuidTaxonValuelessEuroMed) ){
1931
			            return T_STATUS_NOT_ACCEPTED_VALUELESS;
1932
			        }
1933
			    }else{
1934
			        return T_STATUS_ACCEPTED;
1935
			    }
1936
	        }
1937
			logger.error("Taxon status could not be defined. This should not happen: " + taxonBase.getTitleCache() );
1938
			return T_STATUS_UNRESOLVED;
1939
		}else if (taxonBase.isInstanceOf(Synonym.class)){
1940
			Synonym synonym = CdmBase.deproxy(taxonBase, Synonym.class);
1941
			if (taxonBase2statusFk(synonym.getAcceptedTaxon())== T_STATUS_NOT_ACCEPTED_VALUELESS ){
1942
			    return T_STATUS_NOT_ACCEPTED_VALUELESS;
1943
			}else{
1944
			    return T_STATUS_SYNONYM;
1945
			}
1946
		}else{
1947
			logger.warn("Unresolved taxon status.");
1948
			return T_STATUS_UNRESOLVED;
1949
		}
1950
		//TODO
1951
//		public static int T_STATUS_UNRESOLVED = 5;
1952
//		public static int T_STATUS_ORPHANED = 6;
1953
	}
1954

    
1955
//	/**
1956
//	 *
1957
//	 * @param taxonBase
1958
//	 * @return
1959
//	 */
1960
//	public static String taxonBase2statusCache (TaxonBase<?> taxonBase){
1961
//		if (taxonBase == null){return null;}
1962
//		if (taxonBase.isInstanceOf(Taxon.class)){
1963
//			Taxon taxon = CdmBase.deproxy(taxonBase, Taxon.class);
1964
//			if (taxon.getTaxonNodes().size() == 0){
1965
//				return T_STATUS_STR_NOT_ACCEPTED;
1966
//			}else{
1967
//				return T_STATUS_STR_ACCEPTED;
1968
//			}
1969
//		}else if (taxonBase.isInstanceOf(Synonym.class)){
1970
//			return T_STATUS_STR_SYNONYM;
1971
//		}else{
1972
//			logger.warn("Unknown ");
1973
//			return T_STATUS_STR_UNRESOLVED;
1974
//		}
1975
//		//TODO
1976
//		public static int T_STATUS_STR_PARTIAL_SYN = 3;
1977
//		public static int T_STATUS_STR_PRO_PARTE_SYN = 4;
1978
//		public static int T_STATUS_STR_UNRESOLVED = 5;
1979
//		public static int T_STATUS_STR_ORPHANED = 6;
1980
//	}
1981

    
1982
	/**
1983
	 * Returns the {@link SourceCategory SourceCategory} representation of the given {@link ReferenceType ReferenceType} in PESI.
1984
	 * @param reference The {@link Reference Reference}.
1985
	 * @return The {@link SourceCategory SourceCategory} representation in PESI.
1986
	 */
1987
	public static Integer reference2SourceCategoryFK(Reference reference) {
1988
		if (reference == null){
1989
			return null;
1990
		} else if (reference.getType().equals(ReferenceType.Article)) {
1991
			return REF_ARTICLE_IN_PERIODICAL;
1992
		} else if (reference.getType().equals(ReferenceType.Book)) {
1993
			return REF_BOOK;
1994
		} else if (reference.getType().equals(ReferenceType.BookSection)) {
1995
			return REF_PART_OF_OTHER;
1996
		} else if (reference.getType().equals(ReferenceType.Section)) {
1997
			return REF_PART_OF_OTHER;
1998
		} else if (reference.getType().equals(ReferenceType.Database)) {
1999
			return REF_DATABASE;
2000
		} else if (reference.getType().equals(ReferenceType.WebPage)) {
2001
			return REF_WEBSITE;
2002
		} else if (reference.getType().equals(ReferenceType.CdDvd)) {
2003
			return REF_NOT_APPLICABLE;
2004
		} else if (reference.getType().equals(ReferenceType.Journal)) {
2005
			return REF_JOURNAL;
2006
		} else if (reference.getType().equals(ReferenceType.PrintSeries)) {
2007
			return REF_PUBLICATION;  //?
2008
		} else if (reference.getType().equals(ReferenceType.Proceedings)) {
2009
			return REF_PUBLICATION;  //?
2010
		} else if (reference.getType().equals(ReferenceType.Patent)) {
2011
			return REF_NOT_APPLICABLE;
2012
		} else if (reference.getType().equals(ReferenceType.PersonalCommunication)) {
2013
			return REF_INFORMAL;
2014
		} else if (reference.getType().equals(ReferenceType.Report)) {
2015
			return REF_NOT_APPLICABLE;
2016
		} else if (reference.getType().equals(ReferenceType.Thesis)) {
2017
			return REF_NOT_APPLICABLE;
2018
		} else if (reference.getType().equals(ReferenceType.Generic)) {
2019
            if(reference.hasMarker(ErmsTransformer.uuidMarkerRefPublication, true)){
2020
                return REF_PUBLICATION;
2021
            }else if(reference.hasMarker(ErmsTransformer.uuidMarkerRefInformal, true)){
2022
                return REF_INFORMAL;
2023
            }else if(reference.hasMarker(ErmsTransformer.uuidMarkerRefTypeI, true)){
2024
                logger.warn("ERMS ref type 'i' is not yet correctly matched to PESI");
2025
                return REF_INFORMAL;
2026
            }else{
2027
                return REF_UNRESOLVED;
2028
            }
2029
        } else {
2030
			logger.warn("Reference type not yet supported in PESI: "+ reference.getType());
2031
			return null;
2032
		}
2033
	}
2034

    
2035
	/**
2036
	 * Returns the {@link SourceCategoryCache SourceCategoryCache}.
2037
	 * @param reference The {@link Reference Reference}.
2038
	 * @return The {@link SourceCategoryCache SourceCategoryCache}.
2039
	 */
2040
	public String getCacheByReference(Reference reference) {
2041
		if (reference == null){
2042
			return null;
2043
		}else{
2044
			return this.sourceCategoryCacheMap.get(reference2SourceCategoryFK(reference));
2045
		}
2046
	}
2047

    
2048
	@Override
2049
    public String getCacheByNomStatus(NomenclaturalStatusType status) {
2050
		if (status == null){
2051
			return null;
2052
		}else{
2053
			return this.nameStatusCacheMap.get(nomStatus2nomStatusFk(status));
2054
		}
2055
	}
2056

    
2057
	public static Integer nomStatus2nomStatusFk (NomenclaturalStatusType status){
2058
		if (status == null){
2059
			return null;
2060
		}
2061
		if (status.equals(NomenclaturalStatusType.INVALID())) {return NAME_ST_NOM_INVAL;
2062
		}else if (status.equals(NomenclaturalStatusType.ILLEGITIMATE())) {return NAME_ST_NOM_ILLEG;
2063
		}else if (status.equals(NomenclaturalStatusType.NUDUM())) {return NAME_ST_NOM_NUD;
2064
		}else if (status.equals(NomenclaturalStatusType.REJECTED())) {return NAME_ST_NOM_REJ;
2065
		}else if (status.equals(NomenclaturalStatusType.REJECTED_PROP())) {return NAME_ST_NOM_REJ_PROP;
2066
		}else if (status.equals(NomenclaturalStatusType.UTIQUE_REJECTED())) {return NAME_ST_NOM_UTIQUE_REJ;
2067
		}else if (status.equals(NomenclaturalStatusType.UTIQUE_REJECTED_PROP())) {return NAME_ST_NOM_UTIQUE_REJ_PROP;
2068
		}else if (status.equals(NomenclaturalStatusType.CONSERVED())) {return NAME_ST_NOM_CONS;
2069

    
2070
		}else if (status.equals(NomenclaturalStatusType.CONSERVED_PROP())) {return NAME_ST_NOM_CONS_PROP;
2071
		}else if (status.equals(NomenclaturalStatusType.ORTHOGRAPHY_CONSERVED())) {return NAME_ST_ORTH_CONS;
2072
		}else if (status.equals(NomenclaturalStatusType.ORTHOGRAPHY_CONSERVED_PROP())) {return NAME_ST_ORTH_CONS_PROP;
2073
		}else if (status.equals(NomenclaturalStatusType.SUPERFLUOUS())) {return NAME_ST_NOM_SUPERFL;
2074
		}else if (status.equals(NomenclaturalStatusType.AMBIGUOUS())) {return NAME_ST_NOM_AMBIG;
2075
		}else if (status.equals(NomenclaturalStatusType.PROVISIONAL())) {return NAME_ST_NOM_PROVIS;
2076
		}else if (status.equals(NomenclaturalStatusType.DOUBTFUL())) {return NAME_ST_NOM_DUB;
2077
		}else if (status.equals(NomenclaturalStatusType.NOVUM())) {return NAME_ST_NOM_NOV;
2078

    
2079
		}else if (status.equals(NomenclaturalStatusType.CONFUSUM())) {return NAME_ST_NOM_CONFUS;
2080
		}else if (status.equals(NomenclaturalStatusType.ALTERNATIVE())) {return NAME_ST_NOM_ALTERN;
2081
		}else if (status.equals(NomenclaturalStatusType.COMBINATION_INVALID())) {return NAME_ST_COMB_INVAL;
2082
		}else if (status.equals(NomenclaturalStatusType.LEGITIMATE())) {return NAME_ST_LEGITIMATE;
2083

    
2084
		}else if (status.getUuid().equals(BerlinModelTransformer.uuidNomStatusCombIned)||
2085
		        //FIXME deduplicate COMB_NOV
2086
		        status.equals(NomenclaturalStatusType.COMB_NOV())) {return NAME_ST_COMB_INED;
2087
		}else if (status.getUuid().equals(BerlinModelTransformer.uuidNomStatusNomOrthCons)) {return NAME_ST_NOM_AND_ORTH_CONS;
2088
		}else if (status.getUuid().equals(BerlinModelTransformer.uuidNomStatusSpNovIned)) {return NAME_ST_SP_NOV_INED;
2089

    
2090

    
2091
		// The following are non-existent in CDM
2092
//		}else if (status.equals(NomenclaturalStatusType.)) {return NAME_ST_COMB_AND_STAT_INED;
2093
//		}else if (status.equals(NomenclaturalStatusType.)) {return NAME_ST_NOM_NOV_INED;
2094
		}else if (status.getUuid().equals(ErmsTransformer.uuidNomStatusAlternateRepresentation)) {return NAME_ST_ALTERNATE_REPRESENTATION;
2095
		}else if (status.getUuid().equals(uuidNomStatusTemporaryName)) {return NAME_ST_TEMPORARY_NAME;
2096
		}else if (status.getUuid().equals(ErmsTransformer.uuidNomStatusSpeciesInquirenda)) {return NAME_ST_SPECIES_INQUIRENDA;
2097

    
2098
		//TODO
2099
		}else {
2100
			//TODO Exception
2101
			logger.warn("NomStatus type not yet supported by PESI export: "+ status);
2102
			return null;
2103
		}
2104
	}
2105

    
2106
	/**
2107
	 * Returns the RelTaxonQualifierCache for a given taxonRelation.
2108
	 * @param relation
2109
	 * @return
2110
	 */
2111
	public String getCacheByRelationshipType(RelationshipBase relation, NomenclaturalCode code){
2112
		if (relation == null){
2113
			return null;
2114
		}else{
2115
			String result;
2116
			Integer key = taxonRelation2RelTaxonQualifierFk(relation);
2117
			if (code.equals(NomenclaturalCode.ICZN)){
2118
				result = this.taxRelZooQualifierCacheMap.get(key);
2119
				if (result == null){
2120
					result = this.taxRelQualifierCacheMap.get(key);
2121
				}
2122
			}else{
2123
				result = this.taxRelQualifierCacheMap.get(key);
2124
			}
2125
			return result;
2126
		}
2127
	}
2128

    
2129
    public String getCacheBySynonymType(Synonym synonym, NomenclaturalCode code){
2130
        if (synonym == null){
2131
            return null;
2132
        }else{
2133
            String result;
2134
            Integer key = synonym2RelTaxonQualifierFk(synonym);
2135
            if (code.equals(NomenclaturalCode.ICZN)){
2136
                result = this.taxRelZooQualifierCacheMap.get(key);
2137
                if (result == null){
2138
                    result = this.taxRelQualifierCacheMap.get(key);
2139
                }
2140
            }else{
2141
                result = this.taxRelQualifierCacheMap.get(key);
2142
            }
2143
            return result;
2144
        }
2145
    }
2146

    
2147
    public static Integer synonym2RelTaxonQualifierFk(Synonym synonym) {
2148
        if (synonym == null || synonym.getType() == null){
2149
            return null;
2150
        }
2151
        SynonymType type = synonym.getType();
2152
        if (type.equals(SynonymType.SYNONYM_OF())) {return IS_SYNONYM_OF;
2153
        }else if (type.equals(SynonymType.HOMOTYPIC_SYNONYM_OF())) {return IS_HOMOTYPIC_SYNONYM_OF;
2154
        }else if (type.equals(SynonymType.HETEROTYPIC_SYNONYM_OF())) {return IS_HETEROTYPIC_SYNONYM_OF;
2155
        }else if (type.equals(SynonymType.INFERRED_EPITHET_OF())) {return IS_INFERRED_EPITHET_FOR;
2156
        }else if (type.equals(SynonymType.INFERRED_GENUS_OF())) {return IS_INFERRED_GENUS_FOR;
2157
        }else if (type.equals(SynonymType.POTENTIAL_COMBINATION_OF())) {return IS_POTENTIAL_COMBINATION_FOR;
2158
        }else if (type.equals(SynonymType.INFERRED_SYNONYM_OF())) {
2159
            logger.warn("Inferred synonynm type not yet implemented. Should it realy exist?");
2160
            return null;
2161
        }else{
2162
            logger.warn("Unhandled synonym type: " + type.getTitleCache());
2163
            return null;
2164
        }
2165
//              return IS_PRO_PARTE_SYNONYM_OF;
2166
//              return IS_PARTIAL_SYNONYM_OF;
2167
//              return IS_PRO_PARTE_AND_HOMOTYPIC_SYNONYM_OF;
2168
//              return IS_PARTIAL_AND_HOMOTYPIC_SYNONYM_OF;
2169
//              return IS_PRO_PARTE_AND_HETEROTYPIC_SYNONYM_OF;
2170
//              return IS_PARTIAL_AND_HETEROTYPIC_SYNONYM_OF;
2171
    }
2172

    
2173

    
2174
	/**
2175
	 * Returns the RelTaxonQualifierFk for a TaxonRelation.
2176
	 * @param relation
2177
	 * @return
2178
	 */
2179
	public static Integer taxonRelation2RelTaxonQualifierFk(RelationshipBase<?,?,?> relation) {
2180
		if (relation == null || relation.getType() == null) {
2181
			return null;
2182
		}
2183
		RelationshipTermBase<?> type = relation.getType();
2184
		if (type.equals(TaxonRelationshipType.MISAPPLIED_NAME_FOR())) {
2185
			return IS_MISAPPLIED_NAME_FOR;
2186
		} else if (type.equals(TaxonRelationshipType.PRO_PARTE_MISAPPLIED_NAME_FOR())) {
2187
            return IS_PRO_PARTE_MISAPPLIED_NAME_FOR;
2188
        } else if (type.equals(TaxonRelationshipType.PRO_PARTE_SYNONYM_FOR())) {
2189
		    return IS_PRO_PARTE_SYNONYM_OF;
2190
		} else if (type.equals(TaxonRelationshipType.PARTIAL_SYNONYM_FOR())) {
2191
            return IS_PARTIAL_SYNONYM_OF;
2192
        } else if (type.equals(NameRelationshipType.BASIONYM())) {
2193
			return IS_BASIONYM_FOR;
2194
		} else if (type.equals(NameRelationshipType.LATER_HOMONYM())) {
2195
			return IS_LATER_HOMONYM_OF;
2196
		} else if (type.equals(NameRelationshipType.REPLACED_SYNONYM())) {
2197
			return IS_REPLACED_SYNONYM_FOR;
2198
		} else if (type.equals(NameRelationshipType.VALIDATED_BY_NAME())) {
2199
			return IS_VALIDATION_OF;
2200
		} else if (type.equals(NameRelationshipType.LATER_VALIDATED_BY_NAME())) {
2201
			return IS_LATER_VALIDATION_OF;
2202
		} else if (type.equals(NameRelationshipType.CONSERVED_AGAINST())) {
2203
			return IS_CONSERVED_AGAINST;
2204
		} else if (type.equals(NameRelationshipType.TREATED_AS_LATER_HOMONYM())) {
2205
			return IS_TREATED_AS_LATER_HOMONYM_OF;
2206
		} else if (type.equals(NameRelationshipType.ORTHOGRAPHIC_VARIANT())) {
2207
			return IS_ORTHOGRAPHIC_VARIANT_OF;
2208
	    } else if (type.equals(NameRelationshipType.ORIGINAL_SPELLING())) {
2209
	        return IS_ORIGINAL_SPELLING_FOR;
2210
        } else if (type.equals(NameRelationshipType.BLOCKING_NAME_FOR())) {
2211
            return IS_BLOCKING_NAME_FOR;
2212
		} else if (type.equals(NameRelationshipType.ALTERNATIVE_NAME())) {
2213
			return IS_ALTERNATIVE_NAME_FOR;
2214
		} else if (type.equals(HybridRelationshipType.FEMALE_PARENT())) {
2215
			return IS_FEMALE_PARENT_OF;
2216
		} else if (type.equals(HybridRelationshipType.MALE_PARENT())) {
2217
			return IS_MALE_PARENT_OF;
2218
		} else if (type.equals(HybridRelationshipType.FIRST_PARENT())) {
2219
			return IS_FIRST_PARENT_OF;
2220
		} else if (type.equals(HybridRelationshipType.SECOND_PARENT())) {
2221
			return IS_SECOND_PARENT_OF;
2222
		} else if (type.getUuid().equals(TaxonRelationshipType.uuidSynonymOfTaxonRelationship)) {
2223
			return IS_SYNONYM_OF;
2224
	    } else if (type.getUuid().equals(TaxonRelationshipType.uuidHeterotypicSynonymTaxonRelationship)) {
2225
	        return IS_HETEROTYPIC_SYNONYM_OF;
2226
	    } else if (type.getUuid().equals(TaxonRelationshipType.uuidHomotypicSynonymTaxonRelationship)) {
2227
	        return IS_HOMOTYPIC_SYNONYM_OF;
2228
		} else {
2229
			logger.warn("No equivalent RelationshipType found in datawarehouse for: " + type.getTitleCache());
2230
		}
2231

    
2232
		// The following have no equivalent attribute in CDM
2233
//		IS_TYPE_OF
2234
//		IS_CONSERVED_TYPE_OF
2235
//		IS_REJECTED_TYPE_OF
2236
//		IS_REJECTED_IN_FAVOUR_OF
2237
//		HAS_SAME_TYPE_AS
2238
//		IS_LECTOTYPE_OF
2239
//		TYPE_NOT_DESIGNATED
2240

    
2241

    
2242
		return null;
2243
	}
2244
	/**
2245
     * FIXME still needed?
2246
     * Returns the RelTaxonQualifierFk for a TaxonRelation.
2247
     * @param relation
2248
     * @return
2249
     */
2250
	public static Integer synonymrelation2RelTaxonQualifierFk(Synonym syn) {
2251
        if (syn.getAcceptedTaxon() == null) {
2252
            return null;
2253
        }
2254
        if (syn.getType().equals(SynonymType.HETEROTYPIC_SYNONYM_OF())){
2255
            return IS_HETEROTYPIC_SYNONYM_OF;
2256
        } else if (syn.getType().equals(SynonymType.HOMOTYPIC_SYNONYM_OF())){
2257
            return IS_HOMOTYPIC_SYNONYM_OF;
2258
        }else if (syn.getType().equals(SynonymType.INFERRED_EPITHET_OF())) {
2259
            return IS_INFERRED_EPITHET_FOR;
2260
        } else if (syn.getType().equals(SynonymType.INFERRED_GENUS_OF())) {
2261
            return IS_INFERRED_GENUS_FOR;
2262
        } else if (syn.getType().equals(SynonymType.POTENTIAL_COMBINATION_OF())) {
2263
            return IS_POTENTIAL_COMBINATION_FOR;
2264
        }
2265
        return IS_SYNONYM_OF;
2266

    
2267
	}
2268

    
2269
	/**
2270
	 * Returns the StatusFk for a given StatusCache.
2271
	 * @param StatusCache
2272
	 * @return
2273
	 */
2274
	public Integer statusCache2StatusFk(String StatusCache) {
2275
		Integer result = null;
2276
		if (StatusCache.equalsIgnoreCase("Checked by Taxonomic Editor: included in ERMS 1.1")) {
2277
			return 0;
2278
		} else if (StatusCache.equalsIgnoreCase("Added by Database Management Team")) {
2279
			return 2;
2280
		} else if (StatusCache.equalsIgnoreCase("Checked by Taxonomic Editor")) {
2281
			return 3;
2282
		} else if (StatusCache.equalsIgnoreCase("Edited by Database Management Team")) {
2283
			return 4;
2284
		} else {
2285
			logger.error("StatusFk could not be determined. StatusCache unknown: " + StatusCache);
2286
		}
2287

    
2288
		return result;
2289
	}
2290

    
2291
	/**
2292
	 * Returns the FossilStatusFk for a given FossilStatusCache.
2293
	 * @param fossilStatusCache
2294
	 * @return
2295
	 */
2296
	public Integer fossilStatusCache2FossilStatusFk(String fossilStatusCache) {
2297
		Integer result = null;
2298
		if (fossilStatusCache.equalsIgnoreCase("recent only")) {
2299
			return 1;
2300
		} else if (fossilStatusCache.equalsIgnoreCase("fossil only")) {
2301
			return 2;
2302
		} else if (fossilStatusCache.equalsIgnoreCase("recent + fossil")) {
2303
			return 3;
2304
		} else {
2305
			logger.error("FossilStatusFk could not be determined. FossilStatusCache unknown: " + fossilStatusCache);
2306
		}
2307

    
2308
		return result;
2309
	}
2310

    
2311
	/**
2312
	 * Returns the NoteCategoryFk for a given UUID representing an ExtensionType.
2313
	 * @param uuid
2314
	 * @return
2315
	 */
2316
	public static Integer getNoteCategoryFk(UUID uuid) {
2317
		Integer result = null;
2318
		if (uuid.equals(uuidExtTaxComment)) {
2319
			result = 270;
2320
		} else if (uuid.equals(uuidExtFauComment)) {
2321
			result = 281;
2322
		} else if (uuid.equals(uuidExtFauExtraCodes)) {
2323
			result = 278;
2324
		}
2325
		return result;
2326
	}
2327

    
2328
	/**
2329
	 * Returns the NoteCategoryCache for a given UUID representing an ExtensionType.
2330
	 * @param uuid
2331
	 * @return
2332
	 */
2333
	public static String getNoteCategoryCache(UUID uuid) {
2334
		String result = null;
2335
		if (uuid.equals(uuidExtTaxComment)) {
2336
			result = "Taxonomy";
2337
		} else if (uuid.equals(uuidExtFauComment)) {
2338
			result = "Biology";
2339
		} else if (uuid.equals(uuidExtFauExtraCodes)) {
2340
			result = "Distribution";
2341
		}
2342
		return result;
2343
	}
2344

    
2345
	public static Integer getQualityStatusKeyBySource(EnumSet<PesiSource> sources, TaxonName taxonName) {
2346
		if (sources.contains(PesiSource.EM)){
2347
			return QUALITY_STATUS_ADD_BY_DBMT;
2348
		}else if (sources.contains(PesiSource.ERMS)){
2349
			Set<String> statusSet = getAllQualityStatus(taxonName);
2350
			if (statusSet.size() > 1){
2351
				logger.warn("ERMS TaxonName has more than 1 quality status: " + taxonName.getTitleCache() + "; lisd=" + taxonName.getLsid());
2352
			}
2353
			if (statusSet.contains("Checked by Taxonomic Editor: included in ERMS 1.1")){
2354
				return QUALITY_STATUS_CHECKED_EDITOR_ERMS_1_1;
2355
			}else if (statusSet.contains("Added by Database Management Team")){
2356
				return QUALITY_STATUS_ADD_BY_DBMT;
2357
			}else if (statusSet.contains("Checked by Taxonomic Editor")){
2358
				return QUALITY_STATUS_CHECKED_EDITOR;
2359
			}else if (statusSet.contains("Edited by Database Management Team")){
2360
				return QUALITY_STATUS_EDITED_BY_DBMT;
2361
			}else if (statusSet.contains("Added/edited by Thematic Editor")){
2362
                return QUALITY_STATUS_THEMATIC_EDITOR;
2363
            }else{
2364
				logger.warn("Unknown ERMS quality status: " + statusSet.iterator().next() + " for taxon name " + taxonName.getTitleCache());
2365
				return null;
2366
			}
2367
		}else{
2368
			return null;   // TODO needs to be implemented for others
2369
		}
2370
	}
2371

    
2372

    
2373
	private static Set<String> getAllQualityStatus(TaxonName taxonName) {
2374
		Set<String> result = new HashSet<>();
2375
		for (TaxonBase<?> taxonBase : taxonName.getTaxonBases()){
2376
			result.addAll(taxonBase.getExtensions(ErmsTransformer.uuidExtQualityStatus));
2377
		}
2378
		return result;
2379
	}
2380

    
2381
	@Override
2382
	public String getQualityStatusCacheByKey(Integer qualityStatusId) throws UndefinedTransformerMethodException {
2383
		if (qualityStatusId == null){
2384
			return null;
2385
		}else{
2386
			return this.qualityStatusCacheMap.get(qualityStatusId);
2387
		}
2388
	}
2389

    
2390

    
2391
	public Object getSourceUseCacheByKey(Integer sourceUseFk) {
2392
		if (sourceUseFk == null){
2393
			return null;
2394
		}else{
2395
			return this.sourceUseCacheMap.get(sourceUseFk);
2396
		}
2397
	}
2398

    
2399
	//TODO create a reverse map
2400
	public Integer getSourceUseKeyCacheByCache(String sourceUseCache) {
2401
        if (sourceUseCache == null){
2402
            return null;
2403
        }else{
2404
            for (Integer key: sourceUseCacheMap.keySet()){
2405
                if (sourceUseCacheMap.get(key).equalsIgnoreCase(sourceUseCache)){
2406
                    return key;
2407
                }
2408
            }
2409
        }
2410
        return null;
2411
    }
2412

    
2413
	@Override
2414
	public String getTaxonStatusCacheByKey(Integer taxonStatusId) throws UndefinedTransformerMethodException {
2415
		if (taxonStatusId == null){
2416
			return null;
2417
		}else{
2418
			return this.taxonStatusCacheMap.get(taxonStatusId);
2419
		}
2420
	}
2421

    
2422
	public static String getOriginalDbBySources(EnumSet<PesiSource> sources) {
2423
		String result = "";
2424
		if (sources.contains(PesiSource.EM)){
2425
			result = CdmUtils.concat(",", result,  SOURCE_STR_EM);
2426
		}
2427
		if (sources.contains(PesiSource.FE)){
2428
			result = CdmUtils.concat(",", result,  SOURCE_STR_FE);
2429
		}
2430
		if (sources.contains(PesiSource.IF)){
2431
			result = CdmUtils.concat(",", result,  SOURCE_STR_IF);
2432
		}
2433
		if (sources.contains(PesiSource.ERMS)){
2434
			result = CdmUtils.concat(",", result,  SOURCE_STR_ERMS);
2435
		}
2436

    
2437
		return result;
2438
	}
2439

    
2440
    public static Integer pesiKingdomId(String str) {
2441
        return pesiKingdomMap.get(str);
2442
    }
2443
}
(14-14/14)