Revision 09549132
Added by Patrick Plitzner over 7 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/gefaesspflanzen/RedListGefaesspflanzenImportNames.java | ||
|---|---|---|
| 383 | 383 |
NomenclaturalStatus status = NomenclaturalStatus.NewInstance(statusType); |
| 384 | 384 |
//special case for invalid names where the DB entry contains |
| 385 | 385 |
//additional information in brackets e.g. "nom. inval. (sine basion.)" |
| 386 |
if(statusType.equals(NomenclaturalStatusType.INVALID())){
|
|
| 386 |
if(statusType.equals(NomenclaturalStatusType.INVALID()) || statusType.equals(NomenclaturalStatusType.REJECTED()) ){
|
|
| 387 | 387 |
Pattern pattern = Pattern.compile("\\((.*?)\\)");
|
| 388 | 388 |
Matcher matcher = pattern.matcher(nomZusatzString); |
| 389 | 389 |
if (matcher.find()){
|
| ... | ... | |
| 413 | 413 |
else if(hybString.equals(RedListUtil.HYB_G)){
|
| 414 | 414 |
name.setMonomHybrid(true); |
| 415 | 415 |
} |
| 416 |
else if(hybString.equals(RedListUtil.HYB_XF)){
|
|
| 416 |
else if(hybString.equals(RedListUtil.HYB_XF) || hybString.equals(RedListUtil.HYB_XU)){
|
|
| 417 | 417 |
name.setHybridFormula(true); |
| 418 | 418 |
if(ep1String.contains(RedListUtil.HYB_SIGN)){
|
| 419 | 419 |
RedListUtil.logMessage(id, "EPI1 has hybrid signs but with flag: "+RedListUtil.HYB_XF, logger); |
| ... | ... | |
| 475 | 475 |
} |
| 476 | 476 |
} |
| 477 | 477 |
|
| 478 |
if(rangString.equals("SPI")){
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|
| 479 |
addAnnotation("Rank in source: subspecies principes", name);
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|
| 480 |
} |
|
| 481 |
|
|
| 482 | 478 |
//add source |
| 483 | 479 |
ImportHelper.setOriginalSource(name, state.getTransactionalSourceReference(), id, RedListUtil.NAME_NAMESPACE); |
| 484 | 480 |
|
| ... | ... | |
| 524 | 520 |
|
| 525 | 521 |
private void checkTaxonConsistency(long id, String taxNameString, String hybString, String epi1String, TaxonBase<?> taxonBase, RedListGefaesspflanzenImportState state) {
|
| 526 | 522 |
if(taxNameString.split(RedListUtil.HYB_SIGN).length>2){
|
| 527 |
RedListUtil.logMessage(id, "multiple hybrid signs. No name check for "+taxNameString, logger); |
|
| 523 |
RedListUtil.logInfoMessage(id, "multiple hybrid signs. No name check for "+taxNameString, logger);
|
|
| 528 | 524 |
return; |
| 529 | 525 |
} |
| 530 | 526 |
|
| ... | ... | |
| 544 | 540 |
taxNameString = taxNameString.replace("X ", RedListUtil.HYB_SIGN);
|
| 545 | 541 |
} |
| 546 | 542 |
else if(hybString.equals(RedListUtil.HYB_GF)){
|
| 547 |
taxNameString = taxNameString.replace(" "+RedListUtil.HYB_SIGN, " x");
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| 543 |
taxNameString = taxNameString.replace(" "+RedListUtil.HYB_SIGN+" ", " "+RedListUtil.HYB_SIGN);
|
|
| 548 | 544 |
} |
| 549 | 545 |
else if(hybString.equals(RedListUtil.HYB_XF)){
|
| 550 | 546 |
nameCache = taxonBase.getName().getTitleCache(); |
| ... | ... | |
| 611 | 607 |
else if(rankStr.equals("LUS")){
|
| 612 | 608 |
return getRank(state, RedListUtil.uuidRankLusus, "Lusus", "Lusus", "lusus", (OrderedTermVocabulary<Rank>) Rank.GENUS().getVocabulary(), null, RankClass.Infraspecific); |
| 613 | 609 |
} |
| 610 |
else if(rankStr.equals("SPI")){
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|
| 611 |
return getRank(state, RedListUtil.uuidRankSubspeciesPrincipes, "Subspecies principes", "Subspecies principes", "subsp. princ.", (OrderedTermVocabulary<Rank>) Rank.GENUS().getVocabulary(), null, RankClass.Infraspecific); |
|
| 612 |
} |
|
| 613 |
else if(rankStr.equals("KMB")){
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|
| 614 |
return getRank(state, RedListUtil.uuidRankCombination, "Combination", "Combination", "", (OrderedTermVocabulary<Rank>) Rank.GENUS().getVocabulary(), null, RankClass.Infraspecific); |
|
| 615 |
} |
|
| 614 | 616 |
else{
|
| 615 | 617 |
rank = state.getTransformer().getRankByKey(rankStr); |
| 616 | 618 |
} |
Also available in: Unified diff
#5448 Support corner cases