Revision 066bfef4
Added by Andreas Müller almost 7 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/io/greece/FloraHellenicaSynonymImport.java | ||
|---|---|---|
| 59 | 59 |
return "synonyms"; |
| 60 | 60 |
} |
| 61 | 61 |
|
| 62 |
boolean isFirst = true; |
|
| 62 | 63 |
/** |
| 63 | 64 |
* {@inheritDoc}
|
| 64 | 65 |
*/ |
| ... | ... | |
| 74 | 75 |
logger.warn(line + "Unexpected Key: " + key); |
| 75 | 76 |
} |
| 76 | 77 |
} |
| 78 |
if (isFirst){
|
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| 79 |
System.out.println("Start excluded taxa");
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| 80 |
isFirst = false; |
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| 81 |
} |
|
| 77 | 82 |
|
| 78 | 83 |
String row = "row" + state.getCurrentLine(); |
| 79 | 84 |
TaxonBase<?> relatedTaxon = makeSynonym(state, line, record, row); |
| ... | ... | |
| 111 | 116 |
boolean isNec = hasNonAuthor && parsedSynStr[2].contains(" nec ");
|
| 112 | 117 |
|
| 113 | 118 |
|
| 119 |
String misappliedNecAuthor = null; |
|
| 114 | 120 |
if (isMisapplied && hasNonAuthor && !isNec){
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| 115 | 121 |
parsedSynStr[0] = parsedSynStr[0] + " " + parsedSynStr[2]; |
| 122 |
}else if (isMisapplied && hasNonAuthor && isNec){
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misappliedNecAuthor = parsedSynStr[2]; |
|
| 116 | 124 |
} |
| 117 | 125 |
|
| 118 | 126 |
INonViralName nvn = parser.parseFullName(parsedSynStr[0], NomenclaturalCode.ICNAFP, null); |
| 119 | 127 |
if (nvn.isProtectedTitleCache()){
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| 120 |
logger.warn(line + "Name could not be parsed: " + synonymStr); |
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logger.warn(line + "Name could not be parsed: " + parsedSynStr[0] + " (full:" + synonymStr + ")"); |
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} |
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if (misappliedNecAuthor != null){
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nvn.setAuthorshipCache(misappliedNecAuthor); |
|
| 121 | 132 |
} |
| 133 |
|
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| 134 |
|
|
| 122 | 135 |
TaxonNameBase<?,?> name = TaxonNameBase.castAndDeproxy(nvn); |
| 123 | 136 |
if (hasStatus){
|
| 124 | 137 |
try {
|
| ... | ... | |
| 136 | 149 |
result = Taxon.NewInstance(name, getMisappliedRef(state, parsedSynStr[1])); |
| 137 | 150 |
acceptedTaxon.addMisappliedName((Taxon)result, getSecReference(state), null); |
| 138 | 151 |
if (isNec){
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logger.warn(line + "nec not yet handled for misapplied names: " + synonymStr);
|
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logger.warn(line + "nec for misapplied names still needs to be checked: " + synonymStr);
|
|
| 140 | 153 |
} |
| 141 | 154 |
}else{
|
| 142 | 155 |
SynonymType synType = null; |
| ... | ... | |
| 161 | 174 |
private void handleSynonymNon(SimpleExcelTaxonImportState<CONFIG> state, |
| 162 | 175 |
TaxonNameBase<?, ?> name, String nonPart, String line) {
|
| 163 | 176 |
String[] splits = nonPart.split(" nec ");
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| 177 |
|
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TaxonNameBase<?,?> lastHomonym = null; |
|
| 164 | 179 |
for (String split : splits){
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| 165 | 180 |
split = split.trim(); |
| 166 | 181 |
// Saponaria illyrica Ard. |
| ... | ... | |
| 169 | 184 |
// S. columnae Aurnier nec (Rchb. f.) H. Fleischm. |
| 170 | 185 |
// T. glaucescens Rchb. |
| 171 | 186 |
TaxonNameBase<?,?> nonName; |
| 172 |
if (split.matches("(Saponaria illyrica Ard.|Crepis nemausensis Gouan|S. columnae Aurnier|T. glaucescens Rchb.)"
|
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if (split.matches("(Saponaria illyrica Ard.|Crepis nemausensis Gouan|S. columnae Aurnier|T. glaucescens Rchb.|Linaria stricta Guss.)"
|
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| 173 | 188 |
+ "")){
|
| 174 | 189 |
if (split.startsWith("S.")){
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| 175 | 190 |
split = split.replace("S.", "Serapias");
|
| ... | ... | |
| 180 | 195 |
nonName = replaceNameAuthorsAndReferences(state, nonName); |
| 181 | 196 |
name.addRelationshipFromName(nonName, NameRelationshipType.BLOCKING_NAME_FOR(), null); |
| 182 | 197 |
}else{
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String nameStr = name.getNameCache() + " " + split; |
|
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String nameStr = name.getNameCache().replace(" hort.", "") + " " + split;
|
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| 184 | 199 |
nonName = TaxonNameBase.castAndDeproxy(this.parser.parseFullName(nameStr)); |
| 185 | 200 |
nonName = replaceNameAuthorsAndReferences(state, nonName); |
| 186 | 201 |
name.addRelationshipToName(nonName, NameRelationshipType.LATER_HOMONYM(), null); |
| 202 |
if (lastHomonym != null){
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nonName.addRelationshipToName(lastHomonym, NameRelationshipType.LATER_HOMONYM(), null); |
|
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} |
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lastHomonym = nonName; |
|
| 187 | 206 |
} |
| 188 | 207 |
getNameService().saveOrUpdate(nonName); |
| 189 | 208 |
if (nonName.isProtectedTitleCache()){
|
| 190 | 209 |
logger.warn(line + "Non-Name could not be parsed: " + nonName.getTitleCache()); |
| 191 | 210 |
} |
| 192 | 211 |
} |
| 193 |
if (splits.length>1){
|
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| 194 |
logger.warn(line + "nec synonyms maybe not yet correctly implemented: " + name.getTitleCache() + "; " + nonPart); |
|
| 195 |
} |
|
| 212 |
//seems to work correctly |
|
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// if (splits.length>1){
|
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// logger.warn(line + "nec synonyms maybe not yet correctly implemented: " + name.getTitleCache() + "; " + nonPart); |
|
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// } |
|
| 196 | 216 |
} |
| 197 | 217 |
|
| 198 | 218 |
private Reference flGraecReference; |
Also available in: Unified diff
ref #6286 latest changes for Flora of Greece import