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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.redlist.bfnXml.in;
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import java.util.Arrays;
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import java.util.List;
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import java.util.UUID;
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import org.apache.commons.lang.StringUtils;
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import org.apache.log4j.Logger;
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import org.springframework.stereotype.Component;
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import org.springframework.transaction.TransactionStatus;
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import eu.etaxonomy.cdm.api.service.ITermService;
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import eu.etaxonomy.cdm.api.service.IVocabularyService;
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import eu.etaxonomy.cdm.model.common.DefinedTermBase;
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import eu.etaxonomy.cdm.model.common.OrderedTermBase;
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import eu.etaxonomy.cdm.model.common.OrderedTermVocabulary;
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import eu.etaxonomy.cdm.model.common.TermType;
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import eu.etaxonomy.cdm.model.common.TermVocabulary;
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import eu.etaxonomy.cdm.model.description.PresenceAbsenceTerm;
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import eu.etaxonomy.cdm.model.location.NamedArea;
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import eu.etaxonomy.cdm.model.location.NamedAreaLevel;
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import eu.etaxonomy.cdm.model.location.NamedAreaType;
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import eu.etaxonomy.cdm.strategy.exceptions.UnknownCdmTypeException;
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/**
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*
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* @author a.oppermann
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* @date 04.07.2013
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*
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*/
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@Component
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public class BfnXmlImportAddtionalTerms extends BfnXmlImportBase {
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private static final Logger logger = Logger.getLogger(BfnXmlImportAddtionalTerms.class);
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public enum Vocabulary{
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GERMAN_FEDERAL_STATES("Bundesländer"),
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GERMAN_PRESENCE_TERMS("Vorkommensstatus"),
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GERMAN_ESTABLISHMENT_TERMS("Etablierungsstatus");
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private final String vocabulary;
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private Vocabulary(final String vocabulary) {
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this.vocabulary = vocabulary;
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}
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@Override
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public String toString() {
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return vocabulary;
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}
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}
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private static final List<String> GERMAN_PRESENCE_ABSENCE_TERMS = Arrays.asList(new String[] {
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"a:abwesend",
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"aa:abwesend - ausgestorben",
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"af:abwesend - frühere Fehleingabe",
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"v:vorkommend",
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"v+:vorkommend - in Einbürgerung befindlich",
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"ve:vorkommend - etabliert",
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"vk:vorkommend - kultiviert, domestiziert",
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"vu:vorkommend - unbeständig",
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"vs:vorkommend - Vorkommen unsicher",
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"s:vorkommend - unsicher"
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});
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private static final List<String> GERMAN_ESTABLISHMENT_STATUS_TERMS = Arrays.asList(new String[] {
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"A:Archaeophyt",
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"I:Indigen",
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"K:Kulturpflanze / domestiziertes Tier",
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"N:Neophyt",
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"KF:Kultuflüchtling"
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});
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private static final List<String> GERMAN_FEDERAL_STATES = Arrays.asList(new String[] {
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"DE:Deutschland",
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"BW:Baden-Württemberg",
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"BY:Bayern",
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"BE:Berlin",
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"BB:Brandenburg",
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"HB:Bremen",
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"HH:Hamburg",
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"HE:Hessen",
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"MV:Mecklenburg-Vorpommern",
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"NI:Niedersachsen",
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"NW:Nordrhein-Westfalen",
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"RP:Rheinland-Pfalz",
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"SL:Saarland",
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"SN:Sachsen",
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"ST:Sachsen-Anhalt",
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"SH:Schleswig-Holstein",
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"TH:Thüringen"
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});
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/** Hibernate classification vocabulary initialization strategy */
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private static final List<String> VOC_CLASSIFICATION_INIT_STRATEGY = Arrays.asList(new String[] {
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"classification.$",
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"classification.rootNodes",
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"childNodes",
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"childNodes.taxon",
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"childNodes.taxon.name",
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"taxonNodes",
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"taxonNodes.taxon",
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"synonymRelations",
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"taxon.*",
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"taxon.sec",
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"taxon.name.*",
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"taxon.synonymRelations",
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"termVocabulary.*",
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"terms",
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"namedArea"
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});
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public BfnXmlImportAddtionalTerms(){
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super();
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}
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@Override
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public void doInvoke(BfnXmlImportState state){
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logger.info("create german terms ...");
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IVocabularyService vocabularyService = getVocabularyService();
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ITermService termService = getTermService();
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TransactionStatus tx = startTransaction();
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// createGermanNamedAreas(state, vocabularyService, termService);
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createGermanTerms(vocabularyService, termService, GERMAN_FEDERAL_STATES, Vocabulary.GERMAN_FEDERAL_STATES);
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createGermanTerms(vocabularyService, termService, GERMAN_PRESENCE_ABSENCE_TERMS, Vocabulary.GERMAN_PRESENCE_TERMS);
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createGermanTerms(vocabularyService, termService, GERMAN_ESTABLISHMENT_STATUS_TERMS, Vocabulary.GERMAN_ESTABLISHMENT_TERMS);
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commitTransaction(tx);
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logger.info("end create german terms.");
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return;
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}
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//
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//
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// private void createGermanNamedAreas(BfnXmlImportState state ,IVocabularyService vocabularyService, ITermService termService) {
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// int id = 0;
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// NamedArea parentGermany = null;
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// for(String strGermanState:GERMAN_FEDERAL_STATES){
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// UUID germanStateUUID;
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// try {
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// germanStateUUID = BfnXmlTransformer.getGermanStateUUID(strGermanState);
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// } catch (UnknownCdmTypeException e) {
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// logger.warn("Could not match german state to uuid: "+e.toString());
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// germanStateUUID = UUID.randomUUID();
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// }
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// NamedArea germanState = (NamedArea)termService.load(germanStateUUID);
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// if(germanState != null){
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// //already in the db, so no need to step through the whole process again.
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// return;
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// }else{
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// germanState = NamedArea.NewInstance(strGermanState, strGermanState, strGermanState);
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// germanState.setUuid(germanStateUUID);
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// germanState.setType(NamedAreaType.ADMINISTRATION_AREA());
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// germanState.setIdInVocabulary(Integer.toString(id));;
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// if(strGermanState.equalsIgnoreCase("Deutschland")){
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// germanState.setLevel(NamedAreaLevel.COUNTRY());
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// parentGermany = germanState;
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// }else{
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// germanState.setLevel(NamedAreaLevel.STATE());
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// germanState.setPartOf(parentGermany);
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// }
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// }
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// createOrUpdateTermVocabulary(TermType.NamedArea, vocabularyService, germanState, "German Federal States");
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// id++;
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// }
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// }
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private void createGermanTerms(IVocabularyService vocabularyService,ITermService termService , List<String> termList, Vocabulary vocabulary){
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NamedArea parentGermany = null;
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PresenceAbsenceTerm parent = null;
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int id = 0;
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for(String strGermanTerm:termList){
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//Split string into label and abbrevated label
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String[] splittedStrings = StringUtils.splitByWholeSeparator(strGermanTerm, ":");
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String abbrevatedLabel = splittedStrings[0];
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String label = splittedStrings[1];
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//get UUID and load existing term
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UUID termUuuid = null;
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try {
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if(vocabulary.equals(Vocabulary.GERMAN_PRESENCE_TERMS)){
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termUuuid = BfnXmlTransformer.getGermanAbsenceTermUUID(label);
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}else if(vocabulary.equals(Vocabulary.GERMAN_ESTABLISHMENT_TERMS)){
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termUuuid = BfnXmlTransformer.getGermanEstablishmentTermUUID(label);
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}else if(vocabulary.equals(Vocabulary.GERMAN_FEDERAL_STATES)){
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termUuuid = BfnXmlTransformer.getGermanStateUUID(label);
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}
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} catch (UnknownCdmTypeException e) {
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logger.warn("Could not match term to uuid: "+e.toString());
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termUuuid = UUID.randomUUID();
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}
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DefinedTermBase term = termService.load(termUuuid);
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if(term != null){
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//already in the db, so no need to step through the whole process again.
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return;
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}else{
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if(vocabulary.equals(Vocabulary.GERMAN_FEDERAL_STATES)){
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//Namedareas
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term = NamedArea.NewInstance(label, label, abbrevatedLabel);
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((NamedArea) term).setType(NamedAreaType.ADMINISTRATION_AREA());
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term.setIdInVocabulary(Integer.toString(id));
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if(label.equalsIgnoreCase("Deutschland")){
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((NamedArea) term).setLevel(NamedAreaLevel.COUNTRY());
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parentGermany = (NamedArea) term;
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}else{
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((NamedArea) term).setLevel(NamedAreaLevel.STATE());
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term.setPartOf(parentGermany);
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}
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}else{
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term = PresenceAbsenceTerm.NewPresenceInstance(label, label, abbrevatedLabel);
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term.setIdInVocabulary(abbrevatedLabel);
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if(vocabulary.equals(Vocabulary.GERMAN_PRESENCE_TERMS)){
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//create hierarchy of terms
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if(label.equalsIgnoreCase("abwesend")){
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parent = (PresenceAbsenceTerm) term;
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}else if(label.equalsIgnoreCase("vorkommend")){
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parent = (PresenceAbsenceTerm) term;
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}else{
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((PresenceAbsenceTerm)term).setPartOf(parent);
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}
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}
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}
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term.setUuid(termUuuid);
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}
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if(vocabulary.equals(Vocabulary.GERMAN_FEDERAL_STATES)){
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createOrUpdateTermVocabulary(TermType.NamedArea, vocabularyService, term, vocabulary.toString());
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id++;
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}else{
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createOrUpdateTermVocabulary(TermType.PresenceAbsenceTerm, vocabularyService, term, vocabulary.toString());
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}
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}
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}
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/**
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* @param vocabularyService
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* @param term
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* @param vocUUID
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*/
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@SuppressWarnings({ "unchecked", "rawtypes" })
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private OrderedTermVocabulary createOrUpdateTermVocabulary(TermType termType, IVocabularyService vocabularyService, DefinedTermBase term, String strTermVocabulary) {
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OrderedTermVocabulary termVocabulary = null;
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UUID vocUUID = null;
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try {
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vocUUID=BfnXmlTransformer.getRedlistVocabularyUUID(strTermVocabulary);
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} catch (UnknownCdmTypeException e) {
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// TODO Auto-generated catch block
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e.printStackTrace();
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}
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if(vocUUID != null){
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termVocabulary = (OrderedTermVocabulary) vocabularyService.load(vocUUID);
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}
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//lookup via String in case uuid lookup does not work
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if(termVocabulary == null && vocUUID == null){
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List<TermVocabulary> vocList = vocabularyService.list(TermVocabulary.class, null, null, null, VOC_CLASSIFICATION_INIT_STRATEGY);
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for(TermVocabulary tv : vocList){
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if(tv.getTitleCache().equalsIgnoreCase(strTermVocabulary)){
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termVocabulary = (OrderedTermVocabulary) tv;
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}
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}
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}
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//create termvocabulary
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if(termVocabulary == null){
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termVocabulary = OrderedTermVocabulary.NewInstance(termType, strTermVocabulary, strTermVocabulary, strTermVocabulary, null);
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if(vocUUID != null){
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termVocabulary.setUuid(vocUUID);
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}
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}
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termVocabulary.addTerm((OrderedTermBase) term);
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vocabularyService.saveOrUpdate(termVocabulary);
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return termVocabulary;
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}
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@Override
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protected boolean isIgnore(BfnXmlImportState state){
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return ! state.getConfig().isDoAdditionalTerms();
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}
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@Override
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public boolean doCheck(BfnXmlImportState state){
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boolean result = true;
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//TODO needs to be implemented
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return result;
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}
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}
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