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cdmlib-apps / cdm-pesi / src / main / java / eu / etaxonomy / cdm / io @ 85c9a0d8

# Date Author Comment
85c9a0d8 12/28/2019 04:09 PM Andreas Müller

ref #2717 fix sourceFk handling for pure names

19743136 12/28/2019 04:08 PM Andreas Müller

ref #8508 fix and finalize taxon status (cache) validation

3d6c7bfc 12/28/2019 11:45 AM Andreas Müller

ref #1444, ref #8508, ref #8509 fix ERMS taxon status handling

0e601fdc 12/27/2019 11:16 PM Andreas Müller

ref #8509 fix sourceFk handling in PESI taxon export

744bd412 12/27/2019 11:14 PM Andreas Müller

ref #8509 improve tagged names handling in PESI export (ERMS and others)

c0411992 12/27/2019 11:11 PM Andreas Müller

ref #1444, ref #7976 fix erronous subgenus formatting in ERMS

c12d2903 12/27/2019 11:09 PM Andreas Müller

ref #1444, ref #7976 better logging for unhandled unacceptReason

15d48661 12/27/2019 10:49 PM Andreas Müller

cleanup

8f402cc0 12/27/2019 09:39 AM Andreas Müller

ref #1444, ref #2871, ref #7976 improve authorship handling for MAN

751d08a3 12/27/2019 09:37 AM Andreas Müller

ref #1444 remove 2 taxon status checks from ErmsTaxonImportValidator as they are not correct anymore

  • status is now handled via id and tu_accfinal, not via taxonStatus field
a12e9e83 12/26/2019 09:12 PM Andreas Müller

ref #2104 remove fixme from unused PesiNoteSourceExport_Old

e706b35f 12/26/2019 07:28 PM Andreas Müller

cleanup

58968197 12/26/2019 07:21 PM Andreas Müller

ref #1444, ref #7976 improve misapplication handling in ERMS import

d4c6ec84 12/26/2019 01:59 PM Andreas Müller

ref #8508 minor and cleanup

0d26082d 12/26/2019 01:56 PM Andreas Müller

ref #8509 handle new ERMS quality status "Thematic Editor"

2a2eb365 12/26/2019 01:54 PM Andreas Müller

ref #1444 replace tu_acctaxon by tu_accfinal

98d96cf6 12/24/2019 01:51 AM Andreas Müller

cleanup

c44a40e4 12/24/2019 01:45 AM Andreas Müller

ref #8509 fix taxonStatus export for ERMS

0cd4c1a9 12/23/2019 09:37 PM Andreas Müller

cleanup

7373dcf3 12/23/2019 09:36 PM Andreas Müller

ref #2717 remove publish marker and uuidMisappliedCommonName marker handling because not needed anymore

ea77fefa 12/23/2019 08:56 PM Andreas Müller

ref #1444 handle missing sourceUse

4c575756 12/23/2019 08:31 PM Andreas Müller

ref #1444 minor changes and cleanup

bd1bdb28 12/23/2019 08:30 PM Andreas Müller

ref #1444 some changes due to upgrade to ERMS v2019

2d7259ef 12/22/2019 11:08 PM Andreas Müller

ref #2717 some updates to PESI export

244c2806 12/09/2019 05:17 PM Andreas Müller

ref #2717 adapt export for DisplayName, WebShowName etc. to E+M requirements

3556e662 12/09/2019 05:07 PM Andreas Müller

cleanup

ce2d36db 12/09/2019 05:06 PM Andreas Müller

add Serbia + Kosovo, remove NorthAmerica from PESI areas

dacb449b 12/03/2019 09:43 AM Andreas Müller

minor

b4e7eccb 11/29/2019 04:20 PM Andreas Müller

#3945 move some PESI classes to new packages and minor issues

c49b3877 11/18/2019 09:27 AM Andreas Müller

ref #8689 move Cdm2Cdm migration classes from cdm-pesi to cdmlib-io and add BupleurumExportActivator

83146769 11/15/2019 10:54 AM Andreas Müller

ref #8684 fixing compile errors in cdm-pesi

6cb0766e 11/03/2019 01:36 PM Andreas Müller

ref #8643 multiple changes to adapt FauEuPesiExport to current situation

38672714 10/22/2019 04:02 PM Andreas Müller

ref #8479 add import source to FauEu2CDM/CDM-2-CDM import

2e4f981e 10/22/2019 03:57 PM Andreas Müller

cleanup

770828ca 10/21/2019 02:01 PM Andreas Müller

cleanup and ref #8587 handle special form as rank for fungi (IF)

d9ece393 10/13/2019 12:58 AM Andreas Müller

ref #8587 handle null rank names in PESI export a bit better

1363732b 10/13/2019 12:56 AM Andreas Müller

minor

02bf7c25 10/13/2019 12:55 AM Andreas Müller

ref #2826 fix IF subspecies import, link to genus if species not exists

b313991f 10/13/2019 12:53 AM Andreas Müller

adapt some classes to new CommonService.getSourcedObjectSByIdInSource and cleanup

e0935f63 10/12/2019 11:51 PM Andreas Müller

adapt some classes to new CommonService.getSourcedObjectSByIdInSourceC and cleanup

925afb79 10/12/2019 11:02 PM Andreas Müller

cleanup

d9f92b40 10/12/2019 12:06 PM Andreas Müller

ref #8509, ref #8508 some fixes to E+M PESI export and validation

1f9eb0e0 10/12/2019 12:05 PM Andreas Müller

ref #8509 fix trailing whitespace for reference titleCaches

506f2414 10/12/2019 12:01 PM Andreas Müller

ref #8577 cleanup E+M PESI validation

ffd6058e 10/12/2019 11:22 AM Andreas Müller

ref #2826 cleanup IF import

b639d1f2 10/11/2019 02:19 PM Andreas Müller

ref #8577 updates to the E+M PESI export validation

a2a0c1de 10/11/2019 02:19 PM Andreas Müller

ref #2717 some fixes E+M Pesi export

f53e8dce 10/11/2019 02:19 PM Andreas Müller

reef #2717 add notNull handling to description export

dd919d85 10/10/2019 09:47 AM Andreas Müller

reef #2717 better handling of status undefined

9d857396 10/10/2019 09:47 AM Andreas Müller

ref #2717 add Valencian, High Aragonese, Majorcan and Faroer to PESI Export

8d5e5e53 10/10/2019 09:47 AM Andreas Müller

cleanup

b9dcae47 10/10/2019 09:47 AM Andreas Müller

cleanup

bf7e9675 10/10/2019 09:32 AM Katja Luther

Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-apps

ff5db610 10/10/2019 09:31 AM Katja Luther

ref #1445: merging fauna europaea and erms

855ea64a 10/09/2019 09:05 PM Andreas Müller

ref #1444, ref #8509 add defined vocabulary to ERMS areas

81bc4733 10/09/2019 09:04 PM Andreas Müller

ref #2717 add EM common name area handling to PesiTransformer

5afad693 10/09/2019 11:25 AM Andreas Müller

2717 fix NPE in finding areas (still needs to be tested by ERMS import)

99414418 10/09/2019 11:24 AM Andreas Müller

2717 better logging for E+M distribution status "undefined"

9fe94bfe 10/09/2019 11:23 AM Andreas Müller

2717 improve handling of name types which do not exist as taxa (in the area)

ab4a17f5 10/09/2019 11:22 AM Andreas Müller

2717 fix finding kingdom for valueless EM taxa

b643bc02 10/09/2019 11:19 AM Andreas Müller

ref #8577 some changes to E+M export validation

6f79628c 10/09/2019 11:16 AM Andreas Müller

2717 cleanup and better logging for PesiExport

01bc5fe1 10/08/2019 11:30 PM Andreas Müller

ref #8508 some refactoring for ERMS validation

55da90fc 10/08/2019 11:29 PM Andreas Müller

ref #1444 trim displayname for ERMS import

2e058f2b 10/08/2019 11:28 PM Andreas Müller

2717 add PesiEuroMedValidator

67426b79 10/08/2019 11:28 PM Andreas Müller

ref #2717 adapt PesiExport to EuroMed requirements and adapt PesiExportActivatorEM

2f628c0c 10/08/2019 11:22 PM Andreas Müller

cleanup

d346bae9 10/08/2019 10:21 PM Andreas Müller

ref #2717 script for adding E+M source to all E+M taxa

58cd368c 10/07/2019 09:24 PM Andreas Müller

ref #8509 use kingdomId to define rank for PESI export

22e0d6ae 10/07/2019 09:23 PM Andreas Müller

ref #8509 use EnumSet instead of BitSet for source definition

39d481af 10/07/2019 09:21 PM Andreas Müller

cleanup

787b3ec2 10/07/2019 08:48 PM Andreas Müller

ref #8509 cleanup rank handling in PesiTranformer

0b1be0da 10/07/2019 08:46 PM Andreas Müller

ref #1444, ref #8508 move diffIndex method to CdmUtils

57fc748f 10/07/2019 12:49 AM Andreas Müller

ref #8508 adapt ERMS pipeline validator to taxon relationships

54a3d685 10/07/2019 12:49 AM Andreas Müller

cleanup

41cf69c5 10/07/2019 12:48 AM Andreas Müller

ref #1444, ref #5809 fix taxon relationships in ERMS import and export

aa44c220 10/07/2019 12:43 AM Andreas Müller

ref #1444 improve logging and case sensitive handling for synonym relationship type

75f6d666 10/07/2019 12:42 AM Andreas Müller

ref #8509 add included taxon relationship export to PESI

d87e224c 10/07/2019 12:39 AM Andreas Müller

ref #5809 change partition size for source export

9afc9463 10/06/2019 10:04 AM Andreas Müller

ref #8508 add TODO to validation

664255b8 10/06/2019 10:03 AM Andreas Müller

ref #8508 add nomstatus, name rel and taxon rel validation

2b21e6b8 10/06/2019 10:00 AM Andreas Müller

ref #8508 add Monera to ERMS validation again

7599c655 10/06/2019 09:58 AM Andreas Müller

ref #1444 revert order of nomstatus to make it similar to SQL script

60d45927 10/06/2019 09:57 AM Andreas Müller

cleanup

1bbfa4c0 10/06/2019 09:56 AM Andreas Müller

ref #1444 fix included in and synonym relationship handling for ERMS import (1 rel per taxon)

a39ba704 10/06/2019 09:53 AM Andreas Müller

ref #1444 implement ERMS getSynonymRelationTypesByKey

6dbf7ff0 10/06/2019 09:52 AM Andreas Müller

ref #1444 make ERMS getNomenclaturalStatusByKey case insensitiv

397a8033 10/06/2019 09:48 AM Andreas Müller

ref #1444, ref #8508, ref #8509 move synonymTaxonRelationshiptype uuid to TaxonRelationship class

b607fa1a 10/06/2019 09:46 AM Andreas Müller

ref #8509 handle doubtful NomenclaturalStatusType.COMB_NOV() to PESI export

7dcac868 10/06/2019 09:44 AM Andreas Müller

ref #8509 add missing misapplied name and pro parte synonym relations to PESI export

0049964a 10/06/2019 09:42 AM Andreas Müller

cleanup

39af4e55 09/30/2019 11:52 AM Andreas Müller

ref #1444 remove ErmsGeneralImportValidator from import for now

8a133607 09/30/2019 11:48 AM Andreas Müller

ref #1444, ref #8508 add Monera filter handling in ERMS validation and for import

651cb4bc 09/30/2019 10:32 AM Andreas Müller

ref #1444 improve handling of infra-infra-species and include test for taxon title formatting

33337032 09/30/2019 10:29 AM Andreas Müller

ref #1444, ref #8509, ref #8508 handle NomenclaturalStatusType in ERMS pipeline

bb4404d2 09/30/2019 10:20 AM Andreas Müller

cleanup

118bc6b8 09/29/2019 08:33 PM Andreas Müller

ref #8508 latest changes to PesiErmsValidator

93c92edc 09/29/2019 08:33 PM Andreas Müller

ref #8509 minor fix

b91853a7 09/29/2019 08:32 PM Andreas Müller

cleanup PesiTransformer

383b85b1 09/29/2019 08:32 PM Andreas Müller

ref #8509 fix missing non-default language notes

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