ref #1444 replace tu_acctaxon by tu_accfinal

cleanup

ref #8509 fix taxonStatus export for ERMS

cleanup

ref #2717 remove publish marker and uuidMisappliedCommonName marker handling because not needed anymore

ref #1444 handle missing sourceUse

ref #1444 minor changes and cleanup

ref #1444 some changes due to upgrade to ERMS v2019

ref #2717 some updates to PESI export

ref #2717 adapt export for DisplayName, WebShowName etc. to E+M requirements

cleanup

add Serbia + Kosovo, remove NorthAmerica from PESI areas

minor

#3945 move some PESI classes to new packages and minor issues

ref #8689 move Cdm2Cdm migration classes from cdm-pesi to cdmlib-io and add BupleurumExportActivator

ref #8684 fixing compile errors in cdm-pesi

ref #8643 multiple changes to adapt FauEuPesiExport to current situation

ref #8479 add import source to FauEu2CDM/CDM-2-CDM import

cleanup

cleanup and ref #8587 handle special form as rank for fungi (IF)

ref #8587 handle null rank names in PESI export a bit better

minor

ref #2826 fix IF subspecies import, link to genus if species not exists

adapt some classes to new CommonService.getSourcedObjectSByIdInSource and cleanup

adapt some classes to new CommonService.getSourcedObjectSByIdInSourceC and cleanup

cleanup

ref #8509, ref #8508 some fixes to E+M PESI export and validation

ref #8509 fix trailing whitespace for reference titleCaches

ref #8577 cleanup E+M PESI validation

ref #2826 cleanup IF import

ref #8577 updates to the E+M PESI export validation

ref #2717 some fixes E+M Pesi export

reef #2717 add notNull handling to description export

reef #2717 better handling of status undefined

ref #2717 add Valencian, High Aragonese, Majorcan and Faroer to PESI Export

cleanup

cleanup

Merge branch 'master' of ssh://dev.e-taxonomy.eu/var/git/cdmlib-apps

ref #1445: merging fauna europaea and erms

ref #1444, ref #8509 add defined vocabulary to ERMS areas

ref #2717 add EM common name area handling to PesiTransformer

2717 fix NPE in finding areas (still needs to be tested by ERMS import)¶

2717 better logging for E+M distribution status "undefined"¶

2717 improve handling of name types which do not exist as taxa (in the area)¶

2717 fix finding kingdom for valueless EM taxa¶

ref #8577 some changes to E+M export validation

2717 cleanup and better logging for PesiExport¶

ref #8508 some refactoring for ERMS validation

ref #1444 trim displayname for ERMS import

2717 add PesiEuroMedValidator¶

ref #2717 adapt PesiExport to EuroMed requirements and adapt PesiExportActivatorEM

cleanup

ref #2717 script for adding E+M source to all E+M taxa

ref #8509 use kingdomId to define rank for PESI export

ref #8509 use EnumSet instead of BitSet for source definition

cleanup

ref #8509 cleanup rank handling in PesiTranformer

ref #1444, ref #8508 move diffIndex method to CdmUtils

ref #8508 adapt ERMS pipeline validator to taxon relationships

cleanup

ref #1444, ref #5809 fix taxon relationships in ERMS import and export

ref #1444 improve logging and case sensitive handling for synonym relationship type

ref #8509 add included taxon relationship export to PESI

ref #5809 change partition size for source export

ref #8508 add TODO to validation

ref #8508 add nomstatus, name rel and taxon rel validation

ref #8508 add Monera to ERMS validation again

ref #1444 revert order of nomstatus to make it similar to SQL script

cleanup

ref #1444 fix included in and synonym relationship handling for ERMS import (1 rel per taxon)

ref #1444 implement ERMS getSynonymRelationTypesByKey

ref #1444 make ERMS getNomenclaturalStatusByKey case insensitiv

ref #1444, ref #8508, ref #8509 move synonymTaxonRelationshiptype uuid to TaxonRelationship class

ref #8509 handle doubtful NomenclaturalStatusType.COMB_NOV() to PESI export

ref #8509 add missing misapplied name and pro parte synonym relations to PESI export

cleanup

ref #1444 remove ErmsGeneralImportValidator from import for now

ref #1444, ref #8508 add Monera filter handling in ERMS validation and for import

ref #1444 improve handling of infra-infra-species and include test for taxon title formatting

ref #1444, ref #8509, ref #8508 handle NomenclaturalStatusType in ERMS pipeline

cleanup

ref #8508 latest changes to PesiErmsValidator

ref #8509 minor fix

cleanup PesiTransformer

ref #8509 fix missing non-default language notes

ref #1444, ref #8508, ref #8509 handle truncated reference cache correctly

ref #1444, ref #8508, ref #8509 handle rank, kingdom and code correctly for Biota and Monera

cleanup

ref #8508 latest changes for erms pipeline validation

ref #1444 trim notes import ERMS

ref #8509 fix link (and ecology) export ERMS

ref #8509 add CommonNameSource to doDelete for ERMS export

ref #8509 fix ERMS image export to support multiple media

ref #1444 fix sql for link import ERMS

cleanup

ref #8508 latest changes to ERMS validator and activators

ref #1444 fix note for synonyms handling for ERMS import

ref #8509 adapt description source handling for ERMS export

ref #1444 fix note source handling in ERMS

ref #1444, ref #8508, ref #8509 fix link handling and add ecology export to ERMS pipeline